BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644738|ref|NP_206908.1| hypothetical protein
[Helicobacter pylori 26695]
(186 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1M1X|A Chain A, Crystal Structure Of The Extracellular ... 25 4.2
pdb|1YDV|A Chain A, Triosephosphate Isomerase (Tim) >gi|262... 25 4.2
pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (R... 25 5.4
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex >gi|14278207|pdb|1... 25 5.4
pdb|1C2N| Cytochrome C2, Nmr, 20 Structures 25 5.4
pdb|1C2R|A Chain A, Cytochrome c2 >gi|229729|pdb|1C2R|B Cha... 25 5.4
pdb|1IMV|A Chain A, 2.85 A Crystal Structure Of Pedf 25 7.1
>pdb|1M1X|A Chain A, Crystal Structure Of The Extracellular Segment Of Integrin
Alpha Vbeta3 Bound To Mn2+
pdb|1JV2|A Chain A, Crystal Structure Of The Extracellular Segment Of Integrin
Alphavbeta3
pdb|1L5G|A Chain A, Crystal Structure Of The Extracellular Segment Of Integrin
Avb3 In Complex With An Arg-Gly-Asp Ligand
Length = 957
Score = 25.4 bits (54), Expect = 4.2
Identities = 11/48 (22%), Positives = 21/48 (42%)
Query: 132 YYWHNDAKKFHLCIGRSIEENGEKECQKCLAYDKIIDPDGDAYYQESY 179
Y+W + K+ +G ++G K + + ID DG + Q +
Sbjct: 112 YHWRTEMKQEREPVGTCFLQDGTKTVEYAPCRSQDIDADGQGFCQGGF 159
>pdb|1YDV|A Chain A, Triosephosphate Isomerase (Tim)
pdb|1YDV|B Chain B, Triosephosphate Isomerase (Tim)
Length = 248
Score = 25.4 bits (54), Expect = 4.2
Identities = 16/45 (35%), Positives = 24/45 (52%)
Query: 5 VKWNKFRIKCWFIKIDQGAFMKTIEWNEEQRKAFQDLLREFTALI 49
+K N + C+ ++Q KTIE +Q KAF DL+ F +I
Sbjct: 117 LKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVI 161
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 25.0 bits (53), Expect = 5.4
Identities = 17/51 (33%), Positives = 25/51 (48%), Gaps = 3/51 (5%)
Query: 55 EEKQTGRTPKIPKYGSCQNGLNKFLAPWGYACKISPGSHGRLSYKPSIAFC 105
E+ Q GR P++ + GL + L P K S GS G + ++ AFC
Sbjct: 192 EQGQLGRVPELFANRGGRQGLERLLVPKCVMLK-SRGSRGHVRFQD--AFC 239
>pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
Length = 402
Score = 25.0 bits (53), Expect = 5.4
Identities = 17/51 (33%), Positives = 25/51 (48%), Gaps = 3/51 (5%)
Query: 55 EEKQTGRTPKIPKYGSCQNGLNKFLAPWGYACKISPGSHGRLSYKPSIAFC 105
E+ Q GR P++ + GL + L P K S GS G + ++ AFC
Sbjct: 181 EQGQLGRVPELFANRGGRQGLERLLVPKCVMLK-SRGSRGHVRFQD--AFC 228
>pdb|1C2N| Cytochrome C2, Nmr, 20 Structures
Length = 137
Score = 25.0 bits (53), Expect = 5.4
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 153 GEKECQKCLAYDKIIDPDG 171
GEKE KC II PDG
Sbjct: 27 GEKEFNKCKTCHSIIAPDG 45
>pdb|1C2R|A Chain A, Cytochrome c2
pdb|1C2R|B Chain B, Cytochrome c2
Length = 116
Score = 25.0 bits (53), Expect = 5.4
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 153 GEKECQKCLAYDKIIDPDG 171
GEKE KC II PDG
Sbjct: 6 GEKEFNKCKTCHSIIAPDG 24
>pdb|1IMV|A Chain A, 2.85 A Crystal Structure Of Pedf
Length = 398
Score = 24.6 bits (52), Expect = 7.1
Identities = 12/36 (33%), Positives = 17/36 (46%)
Query: 150 EENGEKECQKCLAYDKIIDPDGDAYYQESYDDLKSP 185
+E E + L YD I PD Y+E D + +P
Sbjct: 77 DERTESIIHRALYYDLISSPDIHGTYKELLDTVTAP 112
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.139 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,318,931
Number of Sequences: 13198
Number of extensions: 56571
Number of successful extensions: 70
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 7
length of query: 186
length of database: 2,899,336
effective HSP length: 83
effective length of query: 103
effective length of database: 1,803,902
effective search space: 185801906
effective search space used: 185801906
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)