BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645687|ref|NP_207864.1| copper ion binding protein
(copP) [Helicobacter pylori 26695]
(66 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1K0V|A Chain A, Copper Trafficking: The Solution Struct... 49 8e-08
pdb|1CPZ|A Chain A, Copper Chaperone Of Enterococcus Hirae ... 48 2e-07
pdb|1AFJ| Structure Of The Mercury-Bound Form Of Merp, Th... 46 7e-07
pdb|1KQK|A Chain A, Solution Structure Of The N-Terminal Do... 39 8e-05
pdb|1JWW|A Chain A, Nmr Characterization Of The N-Terminal ... 39 8e-05
pdb|1FVS|A Chain A, Solution Structure Of The Yeast Copper ... 36 7e-04
pdb|2AW0| Fourth Metal-Binding Domain Of The Menkes Coppe... 36 0.001
pdb|1MWY|A Chain A, Solution Structure Of The N-Terminal Do... 28 0.19
pdb|1FE4|A Chain A, Crystal Structure Of Mercury-Hah1 >gi|1... 26 0.74
pdb|1AW2|A Chain A, Triosephosphate Isomerase Of Vibrio Mar... 26 0.74
pdb|1DX4|A Chain A, Ache From Drosophila Melanogaster Compl... 25 1.3
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose... 24 2.8
pdb|1DQ8|A Chain A, Complex Of The Catalytic Portion Of Hum... 23 4.8
pdb|1A8Y| Crystal Structure Of Calsequestrin From Rabbit ... 23 6.3
pdb|1ID0|A Chain A, Crystal Structure Of The Nucleotide Bon... 23 6.3
pdb|1KUG|A Chain A, Crystal Structure Of A Taiwan Habu Veno... 23 8.2
pdb|1KUF|A Chain A, High-Resolution Crystal Structure Of A ... 23 8.2
pdb|1LAM| Leucine Aminopeptidase (Unligated) >gi|1127256|... 23 8.2
pdb|1BLL|E Chain E, Leucine Aminopeptidase (E.C.3.4.11.1) C... 23 8.2
>pdb|1K0V|A Chain A, Copper Trafficking: The Solution Structure Of Bacillus
Subtilis Copz
Length = 73
Score = 49.3 bits (116), Expect = 8e-08
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAP--ATQDLIKEALLDA 61
T QV ++C HCV +E VGE++GVS + V++E V V FDA + +D I +A+ D
Sbjct: 5 TLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKD-IADAIEDQ 63
Query: 62 GQEV 65
G +V
Sbjct: 64 GYDV 67
>pdb|1CPZ|A Chain A, Copper Chaperone Of Enterococcus Hirae (Apo-Form)
Length = 68
Score = 47.8 bits (112), Expect = 2e-07
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 5 FQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQ 51
F V ++CNHCV +IE+ VG I GV + V ++K+ VV+FD Q
Sbjct: 4 FSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQ 50
>pdb|1AFJ| Structure Of The Mercury-Bound Form Of Merp, The Periplasmic
Protein From The Bacterial Mercury Detoxification
System, Nmr, 20 Structures
pdb|1AFI| Structure Of The Reduced Form Of Merp, The Periplasmic Protein
From The Bacterial Mercury Detoxification System, Nmr,
20 Structures
pdb|2HQI| Nmr Solution Structure Of The Oxidized Form Of Merp, 14
Structures
Length = 72
Score = 46.2 bits (108), Expect = 7e-07
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEF-DAPATQDLIKEALLDAG 62
T VP +TC C ++K + ++EGVS +DV EK+ VV F D A+ + +A DAG
Sbjct: 6 TLAVPGMTCAACPITVKKALSKVEGVSKVDVGFEKREAVVTFDDTKASVQKLTKATADAG 65
>pdb|1KQK|A Chain A, Solution Structure Of The N-Terminal Domain Of A
Potential Copper-Translocating P-Type Atpase From
Bacillus Subtilis In The Cu(I)loaded State
Length = 80
Score = 39.3 bits (90), Expect = 8e-05
Identities = 22/65 (33%), Positives = 39/65 (59%), Gaps = 1/65 (1%)
Query: 2 KATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFD-APATQDLIKEALLD 60
KA F + +TC C ++IEK + +IEGV+ V+ ++V VE++ A+ +KEA+
Sbjct: 4 KAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDK 63
Query: 61 AGQEV 65
G ++
Sbjct: 64 LGYKL 68
>pdb|1JWW|A Chain A, Nmr Characterization Of The N-Terminal Domain Of A
Potential Copper-Translocating P-Type Atpase From
Bacillus Subtilis
Length = 80
Score = 39.3 bits (90), Expect = 8e-05
Identities = 22/65 (33%), Positives = 39/65 (59%), Gaps = 1/65 (1%)
Query: 2 KATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFD-APATQDLIKEALLD 60
KA F + +TC C ++IEK + +IEGV+ V+ ++V VE++ A+ +KEA+
Sbjct: 4 KAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDK 63
Query: 61 AGQEV 65
G ++
Sbjct: 64 LGYKL 68
>pdb|1FVS|A Chain A, Solution Structure Of The Yeast Copper Transporter
Domain Ccc2a In The Apo And Cu(I) Load States
pdb|1FVQ|A Chain A, Solution Structure Of The Yeast Copper Transporter
Domain Ccc2a In The Apo And Cu(I) Loaded States
Length = 72
Score = 36.2 bits (82), Expect = 7e-04
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 7 VPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDAG 62
V +TC+ C + I + ++GV+ D+S+ V +D T D IKE + D G
Sbjct: 8 VHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCG 63
>pdb|2AW0| Fourth Metal-Binding Domain Of The Menkes Copper-Transporting
Atpase, Nmr, 20 Structures
pdb|1AW0| Fourth Metal-Binding Domain Of The Menkes Copper-Transporting
Atpase, Nmr, 20 Structures
Length = 72
Score = 35.8 bits (81), Expect = 0.001
Identities = 19/62 (30%), Positives = 31/62 (49%), Gaps = 1/62 (1%)
Query: 2 KATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQ-DLIKEALLD 60
+ + +TCN CV IE + + GV I VS+ + VE+D T + ++ A+ D
Sbjct: 4 ETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIED 63
Query: 61 AG 62
G
Sbjct: 64 MG 65
>pdb|1MWY|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In
The Apo-Form
pdb|1MWZ|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In
The Zn(Ii)-Form
Length = 73
Score = 28.1 bits (61), Expect = 0.19
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDAG 62
+++V + C C K+E V ++ GV+ + V + +VV+ D ++ AL AG
Sbjct: 6 SWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQ-VESALQKAG 63
>pdb|1FE4|A Chain A, Crystal Structure Of Mercury-Hah1
pdb|1FE4|B Chain B, Crystal Structure Of Mercury-Hah1
pdb|1FE0|B Chain B, Crystal Structure Of Cadmium-Hah1
pdb|1FEE|A Chain A, Crystal Structure Of Copper-Hah1
pdb|1FEE|B Chain B, Crystal Structure Of Copper-Hah1
pdb|1FE0|A Chain A, Crystal Structure Of Cadmium-Hah1
Length = 68
Score = 26.2 bits (56), Expect = 0.74
Identities = 13/56 (23%), Positives = 28/56 (49%), Gaps = 3/56 (5%)
Query: 10 ITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDAGQEV 65
+TC C + + + + ++ GV + D+ + K V +E + + D + L G+ V
Sbjct: 10 MTCGGCAEAVSRVLNKLGGVKY-DIDLPNKKVCIE--SEHSMDTLLATLKKTGKTV 62
>pdb|1AW2|A Chain A, Triosephosphate Isomerase Of Vibrio Marinus
pdb|1AW2|D Chain D, Triosephosphate Isomerase Of Vibrio Marinus
pdb|1AW2|G Chain G, Triosephosphate Isomerase Of Vibrio Marinus
pdb|1AW2|J Chain J, Triosephosphate Isomerase Of Vibrio Marinus
pdb|1AW1|A Chain A, Triosephosphate Isomerase Of Vibrio Marinus Complexed
With 2-Phosphoglycolate
pdb|1AW1|D Chain D, Triosephosphate Isomerase Of Vibrio Marinus Complexed
With 2-Phosphoglycolate
pdb|1AW1|G Chain G, Triosephosphate Isomerase Of Vibrio Marinus Complexed
With 2-Phosphoglycolate
pdb|1AW1|J Chain J, Triosephosphate Isomerase Of Vibrio Marinus Complexed
With 2-Phosphoglycolate
pdb|1AW2|B Chain B, Triosephosphate Isomerase Of Vibrio Marinus
pdb|1AW2|E Chain E, Triosephosphate Isomerase Of Vibrio Marinus
pdb|1AW2|H Chain H, Triosephosphate Isomerase Of Vibrio Marinus
pdb|1AW2|K Chain K, Triosephosphate Isomerase Of Vibrio Marinus
pdb|1AW1|B Chain B, Triosephosphate Isomerase Of Vibrio Marinus Complexed
With 2-Phosphoglycolate
pdb|1AW1|E Chain E, Triosephosphate Isomerase Of Vibrio Marinus Complexed
With 2-Phosphoglycolate
pdb|1AW1|H Chain H, Triosephosphate Isomerase Of Vibrio Marinus Complexed
With 2-Phosphoglycolate
pdb|1AW1|K Chain K, Triosephosphate Isomerase Of Vibrio Marinus Complexed
With 2-Phosphoglycolate
Length = 256
Score = 26.2 bits (56), Expect = 0.74
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 16 VDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDAGQEVV 66
VD + E+EGV+ +DV+V ++ V DL + L +AG ++
Sbjct: 20 VDLLNGLNAELEGVTGVDVAVAPPALFV--------DLAERTLTEAGSAII 62
>pdb|1DX4|A Chain A, Ache From Drosophila Melanogaster Complex With Tacrine
Derivative
9-(3-Phenylmethylamino)-1,2,3,4-Tetrahydroacridine
pdb|1QON|A Chain A, Ache From Drosophila Melanogaster Complex With Tacrine
Derivative
9-(3-Iodobenzylamino)-1,2,3,4-Tetrahydroacridine
pdb|1QO9|A Chain A, Native Acetylcholinesterase From Drosophila Melanogaster
Length = 586
Score = 25.4 bits (54), Expect = 1.3
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 17 DKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDAG 62
D F G E ++ S SV + +P T+ L+K ++ +G
Sbjct: 220 DNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSG 265
>pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose
Bound
pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose
Bound
Length = 348
Score = 24.3 bits (51), Expect = 2.8
Identities = 10/36 (27%), Positives = 17/36 (46%)
Query: 17 DKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQD 52
D++E VG+I +D K +V + A + D
Sbjct: 54 DRVELVVGDIADAELVDKLAAKADAIVHYAAESHND 89
>pdb|1DQ8|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg And Coa
pdb|1DQ9|D Chain D, Complex Of Catalytic Portion Of Human Hmg-Coa Reductase
With Hmg-Coa
pdb|1HW8|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Compactin (Also Known As Mevastatin)
pdb|1HWJ|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Cerivastatin
pdb|1DQA|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg, Coa, And Nadp+
pdb|1HWK|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Atorvastatin
pdb|1HWJ|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Cerivastatin
pdb|1HW9|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Simvastatin
pdb|1DQ8|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg And Coa
pdb|1HWL|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Rosuvastatin (Formally Known As Zd4522)
pdb|1DQ9|C Chain C, Complex Of Catalytic Portion Of Human Hmg-Coa Reductase
With Hmg-Coa
pdb|1DQA|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg, Coa, And Nadp+
pdb|1DQ8|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg And Coa
pdb|1DQ9|A Chain A, Complex Of Catalytic Portion Of Human Hmg-Coa Reductase
With Hmg-Coa
pdb|1DQ9|B Chain B, Complex Of Catalytic Portion Of Human Hmg-Coa Reductase
With Hmg-Coa
pdb|1DQA|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg, Coa, And Nadp+
pdb|1HW8|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Compactin (Also Known As Mevastatin)
pdb|1DQ8|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg And Coa
pdb|1HWK|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Atorvastatin
pdb|1HWI|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Fluvastatin
pdb|1HWL|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Rosuvastatin (Formally Known As Zd4522)
pdb|1HWL|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Rosuvastatin (Formally Known As Zd4522)
pdb|1HWJ|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Cerivastatin
pdb|1HW9|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Simvastatin
pdb|1DQA|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg, Coa, And Nadp+
pdb|1HWK|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Atorvastatin
pdb|1HWI|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Fluvastatin
pdb|1HWJ|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Cerivastatin
pdb|1HW9|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Simvastatin
pdb|1HW9|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Simvastatin
pdb|1HWK|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Atorvastatin
pdb|1HWL|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Rosuvastatin (Formally Known As Zd4522)
pdb|1HWI|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Fluvastatin
pdb|1HWI|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Fluvastatin
pdb|1HW8|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Compactin (Also Known As Mevastatin)
pdb|1HW8|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Compactin (Also Known As Mevastatin)
Length = 467
Score = 23.5 bits (49), Expect = 4.8
Identities = 17/53 (32%), Positives = 26/53 (48%), Gaps = 10/53 (18%)
Query: 6 QVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEAL 58
Q+ +++ N+C DK + IEG KSVV E PA +++E L
Sbjct: 258 QILAVSGNYCTDKKPAAINWIEG--------RGKSVVCEAVIPA--KVVREVL 300
>pdb|1A8Y| Crystal Structure Of Calsequestrin From Rabbit Skeletal Muscle
Sarcoplasmic Reticulum At 2.4 A Resolution
Length = 367
Score = 23.1 bits (48), Expect = 6.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 34 VSVEKKSVVVEFDAPATQDLIKEALLDAGQEVV 66
+ V K+ V+E+D + D + E LLD ++ V
Sbjct: 95 IYVFKEDEVIEYDGEFSADTLVEFLLDVLEDPV 127
>pdb|1ID0|A Chain A, Crystal Structure Of The Nucleotide Bond Conformation Of
Phoq Kinase Domain
Length = 152
Score = 23.1 bits (48), Expect = 6.3
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 29 VSFIDVSVEKKS----VVVEFDAPATQDLIKEALLDAGQEV 65
+ F+++S + +VVE D P +E + D GQ V
Sbjct: 61 LEFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRV 101
>pdb|1KUG|A Chain A, Crystal Structure Of A Taiwan Habu Venom
Metalloproteinase Complexed With Its Endogenous
Inhibitor Penw
Length = 203
Score = 22.7 bits (47), Expect = 8.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 29 VSFIDVSVEKKSVVVEFDAPATQDL 53
++ +DV EK + V+ DAP T L
Sbjct: 55 LALLDVWSEKDFITVQADAPTTAGL 79
>pdb|1KUF|A Chain A, High-Resolution Crystal Structure Of A Snake Venom
Metalloproteinase From Taiwan Habu
pdb|1KUI|A Chain A, Crystal Structure Of A Taiwan Habu Venom
Metalloproteinase Complexed With Peqw.
pdb|1KUK|A Chain A, Crystal Structure Of A Taiwan Habu Venom
Metalloproteinase Complexed With Pekw
Length = 203
Score = 22.7 bits (47), Expect = 8.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 29 VSFIDVSVEKKSVVVEFDAPATQDL 53
++ +DV EK + V+ DAP T L
Sbjct: 55 LALLDVWSEKDFITVQADAPTTAGL 79
>pdb|1LAM| Leucine Aminopeptidase (Unligated)
pdb|1LCP|A Chain A, Bovine Lens Leucine Aminopeptidase Complexed With
L-Leucine Phosphonic Acid
pdb|1LCP|B Chain B, Bovine Lens Leucine Aminopeptidase Complexed With
L-Leucine Phosphonic Acid
pdb|1LAN|A Chain A, Leucine Aminopeptidase Complex With L-Leucinal
Length = 484
Score = 22.7 bits (47), Expect = 8.2
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 6 QVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQD 52
++PS+ + C D G + G+ D +K+ VVV ++D
Sbjct: 104 EIPSVEVDPCGDAQAAAEGAVLGLYEYDDLKQKRKVVVSAKLHGSED 150
>pdb|1BLL|E Chain E, Leucine Aminopeptidase (E.C.3.4.11.1) Complex With
Amastatin
pdb|1LAP| Leucine Aminopeptidase (E.C.3.4.11.1)
pdb|1BPM| Leucine Aminopeptidase (E.C.3.4.11.1)
pdb|1BPN| Leucine Aminopeptidase (E.C.3.4.11.1)
Length = 488
Score = 22.7 bits (47), Expect = 8.2
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 6 QVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQD 52
++PS+ + C D G + G+ D +K+ VVV ++D
Sbjct: 105 EIPSVEVDPCGDAQAAAEGAVLGLYEYDDLKQKRKVVVSAKLHGSED 151
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.135 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 340,848
Number of Sequences: 13198
Number of extensions: 9986
Number of successful extensions: 38
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 19
length of query: 66
length of database: 2,899,336
effective HSP length: 42
effective length of query: 24
effective length of database: 2,345,020
effective search space: 56280480
effective search space used: 56280480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)