BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645688|ref|NP_207865.1| hypothetical protein
[Helicobacter pylori 26695]
(262 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Co... 29 0.63
pdb|1PFK|A Chain A, Phosphofructokinase (E.C.2.7.1.11) (R-S... 27 3.1
pdb|2PFK|C Chain C, Phosphofructokinase (E.C.2.7.1.11) 27 3.1
pdb|2PFK|D Chain D, Phosphofructokinase (E.C.2.7.1.11) 27 3.1
pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botuli... 27 3.1
pdb|1DS6|B Chain B, Crystal Structure Of A Rac-Rhogdi Complex 26 4.1
pdb|1EF0|A Chain A, Crystal Structure Of Pi-Scei Miniprecur... 26 5.3
pdb|1JVA|A Chain A, Crystal Structure Of The Vma1-Derived E... 26 5.3
pdb|1VDE|A Chain A, Pi-Scei, A Homing Endonuclease With Pro... 26 5.3
pdb|1BI9|D Chain D, Retinal Dehydrogenase Type Two With Nad... 26 5.3
pdb|1LWS|A Chain A, Crystal Structure Of The Intein Homing ... 25 9.1
pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Do... 25 9.1
pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Do... 25 9.1
>pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp.
pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
Length = 592
Score = 28.9 bits (63), Expect = 0.63
Identities = 26/106 (24%), Positives = 52/106 (48%), Gaps = 7/106 (6%)
Query: 4 KEKEIELETLKREIAQAEASLEQDFIKYMVDKTNEKVEDLFFSNKPEFYRFVFTEQNNYL 63
KEKEIE+E +K E AQA A + + + + NE++ + + E + TE+
Sbjct: 485 KEKEIEVERVKAESAQASAKMLHE-----MQRKNEQMMEQKERSYQEHLK-QLTEKMEND 538
Query: 64 REKLTDKVGRAMDLSDEIQRDKTENESLENGTKFKKRFVFELQNDL 109
R +L + R + L + ++++ E + ++ K + +LQ +
Sbjct: 539 RVQLLKEQERTLALKLQ-EQEQLLKEGFQKESRIMKNEIQDLQTKM 583
>pdb|1PFK|A Chain A, Phosphofructokinase (E.C.2.7.1.11) (R-State) Complex With
Fructose-1,6-Bisphosphate And ADP(Slash)Mg++
pdb|1PFK|B Chain B, Phosphofructokinase (E.C.2.7.1.11) (R-State) Complex With
Fructose-1,6-Bisphosphate And ADP(Slash)Mg++
pdb|2PFK|A Chain A, Phosphofructokinase (E.C.2.7.1.11)
pdb|2PFK|B Chain B, Phosphofructokinase (E.C.2.7.1.11)
Length = 320
Score = 26.6 bits (57), Expect = 3.1
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 179 FVKKDLFTETLSIKITDKKGQKYALIANYNHASDIIEL 216
F ++DL E IK KG+K+A++A H D+ EL
Sbjct: 197 FSREDLVNE---IKAGIAKGKKHAIVAITEHMCDVDEL 231
>pdb|2PFK|C Chain C, Phosphofructokinase (E.C.2.7.1.11)
Length = 302
Score = 26.6 bits (57), Expect = 3.1
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 179 FVKKDLFTETLSIKITDKKGQKYALIANYNHASDIIEL 216
F ++DL E IK KG+K+A++A H D+ EL
Sbjct: 197 FSREDLVNE---IKAGIAKGKKHAIVAITEHMCDVDEL 231
>pdb|2PFK|D Chain D, Phosphofructokinase (E.C.2.7.1.11)
Length = 305
Score = 26.6 bits (57), Expect = 3.1
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 179 FVKKDLFTETLSIKITDKKGQKYALIANYNHASDIIEL 216
F ++DL E IK KG+K+A++A H D+ EL
Sbjct: 197 FSREDLVNE---IKAGIAKGKKHAIVAITEHMCDVDEL 231
>pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With Doxorubicin
pdb|1EPW|A Chain A, Crystal Structure Of Clostridium Neurotoxin Type B
pdb|1F31|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With A Trisaccharide
Length = 1290
Score = 26.6 bits (57), Expect = 3.1
Identities = 40/177 (22%), Positives = 69/177 (38%), Gaps = 43/177 (24%)
Query: 30 KYMVDKTNEKVEDLFFSN----KPEFYRFVFTEQNNYLREKLTDKVGRAMDLSDEIQRDK 85
+Y + +E ++D F+ N E+Y F +N+Y++ K VG + S Q K
Sbjct: 1073 RYKIQSYSEYLKD-FWGNPLMYNKEYYMFNAGNKNSYIKLKKDSPVGEILTRSKYNQNSK 1131
Query: 86 TEN-ESLENGTKFKKRFVFELQNDLIFLRTKRNTYSAKTEHENFQERLLAAKDTFRLIKA 144
N L G KF +R K N+ S + +++
Sbjct: 1132 YINYRDLYIGEKF-------------IIRRKSNSQSINDD----------------IVRK 1162
Query: 145 NDFKTKIYPYQITLRLKTKHIIVFRWLKKEIIKRFV----KKDLFTETLSIKITDKK 197
D+ IY L + + + +++ KKE K F+ D F T+ IK D++
Sbjct: 1163 EDY---IYLDFFNLNQEWR-VYTYKYFKKEEEKLFLAPISDSDEFYNTIQIKEYDEQ 1215
>pdb|1DS6|B Chain B, Crystal Structure Of A Rac-Rhogdi Complex
Length = 180
Score = 26.2 bits (56), Expect = 4.1
Identities = 12/46 (26%), Positives = 29/46 (62%), Gaps = 1/46 (2%)
Query: 75 MDLSDEIQRDKTENESLENGTKFKKRFVFELQNDLIF-LRTKRNTY 119
MDL+ +++ K E L+ G++++ + F++ D++ L+ ++TY
Sbjct: 64 MDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTY 109
>pdb|1EF0|A Chain A, Crystal Structure Of Pi-Scei Miniprecursor
pdb|1EF0|B Chain B, Crystal Structure Of Pi-Scei Miniprecursor
Length = 462
Score = 25.8 bits (55), Expect = 5.3
Identities = 11/27 (40%), Positives = 16/27 (58%)
Query: 221 KTYTTTLYYQKPLFDLIKNSNFNLTIK 247
+TY LY FD ++ S F+LTI+
Sbjct: 181 QTYAPILYENDHFFDYMQKSKFHLTIE 207
>pdb|1JVA|A Chain A, Crystal Structure Of The Vma1-Derived Endonuclease Bearing
The N And C Extein Propeptides
pdb|1JVA|B Chain B, Crystal Structure Of The Vma1-Derived Endonuclease Bearing
The N And C Extein Propeptides
Length = 475
Score = 25.8 bits (55), Expect = 5.3
Identities = 11/27 (40%), Positives = 16/27 (58%)
Query: 221 KTYTTTLYYQKPLFDLIKNSNFNLTIK 247
+TY LY FD ++ S F+LTI+
Sbjct: 188 QTYAPILYENDHFFDYMQKSKFHLTIE 214
>pdb|1VDE|A Chain A, Pi-Scei, A Homing Endonuclease With Protein Splicing
Activity
pdb|1VDE|B Chain B, Pi-Scei, A Homing Endonuclease With Protein Splicing
Activity
pdb|1DFA|A Chain A, Crystal Structure Of Pi-Scei In C2 Space Group
Length = 454
Score = 25.8 bits (55), Expect = 5.3
Identities = 11/27 (40%), Positives = 16/27 (58%)
Query: 221 KTYTTTLYYQKPLFDLIKNSNFNLTIK 247
+TY LY FD ++ S F+LTI+
Sbjct: 177 QTYAPILYENDHFFDYMQKSKFHLTIE 203
>pdb|1BI9|D Chain D, Retinal Dehydrogenase Type Two With Nad Bound
pdb|1BI9|C Chain C, Retinal Dehydrogenase Type Two With Nad Bound
pdb|1BI9|A Chain A, Retinal Dehydrogenase Type Two With Nad Bound
pdb|1BI9|B Chain B, Retinal Dehydrogenase Type Two With Nad Bound
Length = 499
Score = 25.8 bits (55), Expect = 5.3
Identities = 17/46 (36%), Positives = 25/46 (53%), Gaps = 4/46 (8%)
Query: 72 GRAMD-LSDEIQRDKTE---NESLENGTKFKKRFVFELQNDLIFLR 113
GR +D L+D ++RD+ ESL G F + F +LQ + LR
Sbjct: 84 GRLLDKLADLVERDRATLATMESLNGGKPFLQAFYIDLQGVIKTLR 129
>pdb|1LWS|A Chain A, Crystal Structure Of The Intein Homing Endonuclease
Pi-Scei Bound To Its Recognition Sequence
pdb|1LWT|A Chain A, Crystal Structure Of The Intein Homing Endonuclease
Pi-Scei Bound To Its Substrate Dna (Ca2+ Free)
Length = 454
Score = 25.0 bits (53), Expect = 9.1
Identities = 11/27 (40%), Positives = 15/27 (54%)
Query: 221 KTYTTTLYYQKPLFDLIKNSNFNLTIK 247
+TY LY FD + S F+LTI+
Sbjct: 177 QTYAPILYENDHFFDYXQKSKFHLTIE 203
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 25.0 bits (53), Expect = 9.1
Identities = 20/73 (27%), Positives = 33/73 (44%), Gaps = 5/73 (6%)
Query: 27 DFIKYMVDKTNEKVEDLFFSNKPEFYRFVFTEQNNYLREKLTDKVGRAMDLSDEIQRDKT 86
DF++ V +V DLF + K VF ++ + + K VG D +R++T
Sbjct: 108 DFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGND-----EREQT 162
Query: 87 ENESLENGTKFKK 99
N+ L F+K
Sbjct: 163 LNQLLVEMDGFEK 175
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 25.0 bits (53), Expect = 9.1
Identities = 20/73 (27%), Positives = 33/73 (44%), Gaps = 5/73 (6%)
Query: 27 DFIKYMVDKTNEKVEDLFFSNKPEFYRFVFTEQNNYLREKLTDKVGRAMDLSDEIQRDKT 86
DF++ V +V DLF + K VF ++ + + K VG D +R++T
Sbjct: 84 DFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGND-----EREQT 138
Query: 87 ENESLENGTKFKK 99
N+ L F+K
Sbjct: 139 LNQLLVEMDGFEK 151
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.136 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,369,475
Number of Sequences: 13198
Number of extensions: 54648
Number of successful extensions: 141
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 135
Number of HSP's gapped (non-prelim): 13
length of query: 262
length of database: 2,899,336
effective HSP length: 86
effective length of query: 176
effective length of database: 1,764,308
effective search space: 310518208
effective search space used: 310518208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)