BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645689|ref|NP_207866.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
         (438 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1EUV|A  Chain A, X-Ray Structure Of The C-Terminal Ulp1 ...    28  2.0

>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In
           Complex With Smt3, The Yeast Ortholog Of Sumo
          Length = 221

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 24/97 (24%), Positives = 41/97 (41%), Gaps = 10/97 (10%)

Query: 321 EVFLKYGNKLMTRLSPFYIEFDPSLEE---------VKMQIDNKDQMVKIGSVVEVKESF 371
           E F+KY  K       F   F  +L E         +K +    D++ KI + + + +S 
Sbjct: 55  EFFMKYIEKSTPNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSH 114

Query: 372 YIHAMDNIRANVIGFSVSNENKPNEAGYTIKFKDFQK 408
           +   + +++   IG+  S  N PN   + I   D QK
Sbjct: 115 WALGIIDLKKKTIGYVDSLSNGPNAMSFAI-LTDLQK 150



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.320    0.138    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,618,309
Number of Sequences: 13198
Number of extensions: 113363
Number of successful extensions: 335
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 335
Number of HSP's gapped (non-prelim): 1
length of query: 438
length of database: 2,899,336
effective HSP length: 91
effective length of query: 347
effective length of database: 1,698,318
effective search space: 589316346
effective search space used: 589316346
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)