BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645690|ref|NP_207867.1| hypothetical protein
[Helicobacter pylori 26695]
(171 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader S... 30 0.15
pdb|1EAK|A Chain A, Catalytic Domain Of Prommp-2 E404q Muta... 26 2.1
pdb|1GXD|A Chain A, Prommp-2TIMP-2 Complex >gi|22218676|pdb... 26 2.1
pdb|1KKO|A Chain A, Crystal Structure Of Citrobacter Amalon... 26 2.1
pdb|1QS1|A Chain A, Crystal Structure Of Vegetative Insecti... 26 2.8
pdb|1QS2|A Chain A, Crystal Structure Of Vip2 With Nad 26 2.8
pdb|1EFH|B Chain B, Crystal Structure Of The Human Hydroxys... 25 4.7
pdb|1J99|A Chain A, Crystal Structure Of Human Dehydroepian... 25 4.7
pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus ... 25 4.7
pdb|1KBL|A Chain A, Pyruvate Phosphate Dikinase >gi|1865554... 25 6.2
pdb|1DIK| Pyruvate Phosphate Dikinase 25 6.2
pdb|1JDE|A Chain A, K22a Mutant Of Pyruvate, Phosphate Diki... 25 6.2
pdb|1GGO|A Chain A, T453a Mutant Of Pyruvate, Phosphate Dik... 25 6.2
pdb|1FN4|A Chain A, Crystal Structure Of Fab198, An Efficie... 25 6.2
pdb|1F3R|B Chain B, Complex Between Fv Antibody Fragment An... 25 6.2
pdb|1IBJ|C Chain C, Crystal Structure Of Cystathionine Beta... 24 8.1
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 30.0 bits (66), Expect = 0.15
Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 19/155 (12%)
Query: 2 DILKTLQKHLGDVETSDFTTNAIEKSQQIAKFS-RDMKNINESVGALQVLQIACKKLFNK 60
DI K L +++ + E + T ++ IA+ R NI ++ AL +I + +F
Sbjct: 173 DIAKRL-RYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDK-KITDENVFMV 230
Query: 61 SMGLEDKD-------ALQASIIK--QELREIVENCQFLASPLFDTQLNIAINDEIFSMIV 111
+ +D AL+ + +K ++LREI+ L L + + ++ E+F++ +
Sbjct: 231 ASRARPEDIREMMLLALKGNFLKAREKLREIL-----LKQGLSGEDVLVQMHKEVFNLPI 285
Query: 112 VNPLDLL--ENVGEFQAYLEEKLNEIKELLGYLSE 144
P +L + +GE+ L E NEI +L L++
Sbjct: 286 EEPKKVLLADKIGEYNFRLVEGANEIIQLEALLAQ 320
>pdb|1EAK|A Chain A, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|B Chain B, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|C Chain C, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|D Chain D, Catalytic Domain Of Prommp-2 E404q Mutant
Length = 421
Score = 26.2 bits (56), Expect = 2.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 2 DILKTLQKHLGDVETSDFTTNAIEKSQQIAKFSRDMKNIN 41
D LK +QK G +T D N IE ++ + D+ N N
Sbjct: 41 DTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVANYN 80
>pdb|1GXD|A Chain A, Prommp-2TIMP-2 Complex
pdb|1GXD|B Chain B, Prommp-2TIMP-2 Complex
pdb|1CK7|A Chain A, Gelatinase A (Full-Length)
Length = 631
Score = 26.2 bits (56), Expect = 2.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 2 DILKTLQKHLGDVETSDFTTNAIEKSQQIAKFSRDMKNIN 41
D LK +QK G +T D N IE ++ + D+ N N
Sbjct: 43 DTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVANYN 82
>pdb|1KKO|A Chain A, Crystal Structure Of Citrobacter Amalonaticus
Methylaspartate Ammonia Lyase
pdb|1KKO|B Chain B, Crystal Structure Of Citrobacter Amalonaticus
Methylaspartate Ammonia Lyase
pdb|1KKR|A Chain A, Crystal Structure Of Citrobacter Amalonaticus
Methylaspartate Ammonia Lyase Containing (2s,3s)-3-
Methylaspartic Acid
pdb|1KKR|B Chain B, Crystal Structure Of Citrobacter Amalonaticus
Methylaspartate Ammonia Lyase Containing (2s,3s)-3-
Methylaspartic Acid
Length = 413
Score = 26.2 bits (56), Expect = 2.1
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Query: 58 FNKSMGLEDKDALQASIIKQEL--REIVENCQFLASPLFDTQLN---IAINDEIFSMIVV 112
+ S L D AL + +K E+ E C A PLF + IA++ I + V
Sbjct: 132 YGLSQALLDATALASGRLKTEVVCDEWQLPCVPEAIPLFGQSGDDRYIAVDKXILKGVDV 191
Query: 113 NPLDLLENVGEFQAYLEEKLNEIKELLGYLSESLSNPKAFMPS 155
P L+ NV E + EKL E L SL + + P+
Sbjct: 192 LPHALINNVEEKLGFKGEKLREYVRWLSDRILSLRSSPRYHPT 234
>pdb|1QS1|A Chain A, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|B Chain B, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|C Chain C, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|D Chain D, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
Length = 462
Score = 25.8 bits (55), Expect = 2.8
Identities = 15/35 (42%), Positives = 23/35 (64%), Gaps = 3/35 (8%)
Query: 116 DLLENVGEFQAYLEEKLNEIKELLGYLSESLSNPK 150
D L ++ +F+ E+ LN IKE GY+S SLS+ +
Sbjct: 362 DPLPSLKDFE---EQFLNTIKEDKGYMSTSLSSER 393
>pdb|1QS2|A Chain A, Crystal Structure Of Vip2 With Nad
Length = 401
Score = 25.8 bits (55), Expect = 2.8
Identities = 15/35 (42%), Positives = 23/35 (64%), Gaps = 3/35 (8%)
Query: 116 DLLENVGEFQAYLEEKLNEIKELLGYLSESLSNPK 150
D L ++ +F+ E+ LN IKE GY+S SLS+ +
Sbjct: 301 DPLPSLKDFE---EQFLNTIKEDKGYMSTSLSSER 332
>pdb|1EFH|B Chain B, Crystal Structure Of The Human Hydroxysteroid
Sulfotransferase In The Presence Of Pap
pdb|1EFH|A Chain A, Crystal Structure Of The Human Hydroxysteroid
Sulfotransferase In The Presence Of Pap
Length = 292
Score = 25.0 bits (53), Expect = 4.7
Identities = 16/54 (29%), Positives = 27/54 (49%), Gaps = 3/54 (5%)
Query: 65 EDKDALQASI--IKQELREIVEN-CQFLASPLFDTQLNIAINDEIFSMIVVNPL 115
E+K+ L S +KQ+ +E CQFL L +LN+ + + F + N +
Sbjct: 175 EEKNFLLLSYEELKQDTGRTIEKICQFLGKTLEPEELNLILKNSSFQSMKENKM 228
>pdb|1J99|A Chain A, Crystal Structure Of Human Dehydroepiandrosterone
Sulfotransferase In Complex With Substrate
Length = 293
Score = 25.0 bits (53), Expect = 4.7
Identities = 16/54 (29%), Positives = 27/54 (49%), Gaps = 3/54 (5%)
Query: 65 EDKDALQASI--IKQELREIVEN-CQFLASPLFDTQLNIAINDEIFSMIVVNPL 115
E+K+ L S +KQ+ +E CQFL L +LN+ + + F + N +
Sbjct: 183 EEKNFLLLSYEELKQDTGRTIEKICQFLGKTLEPEELNLILKNSSFQSMKENKM 236
>pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus Jannaschii
Mevalonate Kinase
Length = 317
Score = 25.0 bits (53), Expect = 4.7
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 18/88 (20%)
Query: 75 IKQELREIVENCQFL----------ASPLFDTQLNIAINDEIFSMI--VVNPLDLLENVG 122
IK E E ++NC+FL + L + I DEIF I V++ ++N
Sbjct: 180 IKGEFEEFLKNCKFLIVYAEKRKKKTAELVNEVAKIENKDEIFKEIDKVIDEALKIKNKE 239
Query: 123 EFQAYLEEKLNEIKELLGYLSESLSNPK 150
+F + + +K+L ++S PK
Sbjct: 240 DFGKLMTKNHELLKKL------NISTPK 261
>pdb|1KBL|A Chain A, Pyruvate Phosphate Dikinase
pdb|1KC7|A Chain A, Pyruvate Phosphate Dikinase With Bound
Mg-Phosphonopyruvate
Length = 873
Score = 24.6 bits (52), Expect = 6.2
Identities = 18/54 (33%), Positives = 27/54 (49%), Gaps = 8/54 (14%)
Query: 1 MDILKTLQKHLGDVETSDFTTNAIEKSQQIAKFSRDMKNINESVGALQVLQIAC 54
MD+ L+KH D++ +FT IE+ + +R+ K A LQIAC
Sbjct: 305 MDLAMKLEKHFRDMQDMEFT---IEEGKLYFLQTRNGKRT-----APAALQIAC 350
>pdb|1DIK| Pyruvate Phosphate Dikinase
Length = 874
Score = 24.6 bits (52), Expect = 6.2
Identities = 18/54 (33%), Positives = 27/54 (49%), Gaps = 8/54 (14%)
Query: 1 MDILKTLQKHLGDVETSDFTTNAIEKSQQIAKFSRDMKNINESVGALQVLQIAC 54
MD+ L+KH D++ +FT IE+ + +R+ K A LQIAC
Sbjct: 306 MDLAMKLEKHFRDMQDMEFT---IEEGKLYFLQTRNGKRT-----APAALQIAC 351
>pdb|1JDE|A Chain A, K22a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 24.6 bits (52), Expect = 6.2
Identities = 18/54 (33%), Positives = 27/54 (49%), Gaps = 8/54 (14%)
Query: 1 MDILKTLQKHLGDVETSDFTTNAIEKSQQIAKFSRDMKNINESVGALQVLQIAC 54
MD+ L+KH D++ +FT IE+ + +R+ K A LQIAC
Sbjct: 305 MDLAMKLEKHFRDMQDMEFT---IEEGKLYFLQTRNGKRT-----APAALQIAC 350
>pdb|1GGO|A Chain A, T453a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 24.6 bits (52), Expect = 6.2
Identities = 18/54 (33%), Positives = 27/54 (49%), Gaps = 8/54 (14%)
Query: 1 MDILKTLQKHLGDVETSDFTTNAIEKSQQIAKFSRDMKNINESVGALQVLQIAC 54
MD+ L+KH D++ +FT IE+ + +R+ K A LQIAC
Sbjct: 305 MDLAMKLEKHFRDMQDMEFT---IEEGKLYFLQTRNGKRT-----APAALQIAC 350
>pdb|1FN4|A Chain A, Crystal Structure Of Fab198, An Efficient Protector Of
Acetylcholine Receptor Against Myasthenogenic Antibodies
pdb|1FN4|C Chain C, Crystal Structure Of Fab198, An Efficient Protector Of
Acetylcholine Receptor Against Myasthenogenic Antibodies
Length = 211
Score = 24.6 bits (52), Expect = 6.2
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 119 ENVGEFQAYLEEKLNEIKELLGYLSESLSN--PKAFMPSFS 157
+N+ + A+ ++KL E +LL Y + SL P F S S
Sbjct: 27 QNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGS 67
>pdb|1F3R|B Chain B, Complex Between Fv Antibody Fragment And An Analogue Of
The Main Immunogenic Region Of The Acetylcholine
Receptor
Length = 257
Score = 24.6 bits (52), Expect = 6.2
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 119 ENVGEFQAYLEEKLNEIKELLGYLSESLSN--PKAFMPSFS 157
+N+ + A+ ++KL E +LL Y + SL P F S S
Sbjct: 165 QNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGS 205
>pdb|1IBJ|C Chain C, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
Length = 464
Score = 24.3 bits (51), Expect = 8.1
Identities = 11/27 (40%), Positives = 19/27 (69%)
Query: 142 LSESLSNPKAFMPSFSNQSLKDLLSDN 168
++ SLS +F+PSF++ S + L+S N
Sbjct: 1 MTSSLSLHSSFVPSFADLSDRGLISKN 27
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.133 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 825,083
Number of Sequences: 13198
Number of extensions: 28783
Number of successful extensions: 128
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 121
Number of HSP's gapped (non-prelim): 16
length of query: 171
length of database: 2,899,336
effective HSP length: 82
effective length of query: 89
effective length of database: 1,817,100
effective search space: 161721900
effective search space used: 161721900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)