BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645691|ref|NP_207868.1| nickel transport protein
(nixA) [Helicobacter pylori 26695]
         (331 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1L3A|A  Chain A, Structure Of The Plant Transcriptional ...    28  1.1
pdb|1L3A|C  Chain C, Structure Of The Plant Transcriptional ...    28  1.1
pdb|1L3A|D  Chain D, Structure Of The Plant Transcriptional ...    28  1.1
pdb|1L3A|B  Chain B, Structure Of The Plant Transcriptional ...    28  1.1
pdb|1G6W|D  Chain D, Crystal Structure Of The Globular Regio...    25  9.4
pdb|1K0B|D  Chain D, Ure2p In Complex With Glutathione >gi|1...    25  9.4

>pdb|1L3A|A Chain A, Structure Of The Plant Transcriptional Regulator Pbf-2
          Length = 166

 Score = 28.5 bits (62), Expect = 1.1
 Identities = 20/65 (30%), Positives = 31/65 (46%), Gaps = 17/65 (26%)

Query: 204 LSSSAIKVSMVGMLSLPILFAAGMSLFDTLDGAFMLKAYDWAFKTPLRKIYYNISITALS 263
           L S A K+S  GM+ L    AAG            ++ YDW+     RK  +++S+T + 
Sbjct: 29  LDSGAFKLSREGMVMLQFAPAAG------------VRQYDWS-----RKQVFSLSVTEIG 71

Query: 264 VFIAL 268
             I+L
Sbjct: 72  SIISL 76



>pdb|1L3A|C Chain C, Structure Of The Plant Transcriptional Regulator Pbf-2
          Length = 182

 Score = 28.5 bits (62), Expect = 1.1
 Identities = 20/65 (30%), Positives = 31/65 (46%), Gaps = 17/65 (26%)

Query: 204 LSSSAIKVSMVGMLSLPILFAAGMSLFDTLDGAFMLKAYDWAFKTPLRKIYYNISITALS 263
           L S A K+S  GM+ L    AAG            ++ YDW+     RK  +++S+T + 
Sbjct: 29  LDSGAFKLSREGMVMLQFAPAAG------------VRQYDWS-----RKQVFSLSVTEIG 71

Query: 264 VFIAL 268
             I+L
Sbjct: 72  SIISL 76



>pdb|1L3A|D Chain D, Structure Of The Plant Transcriptional Regulator Pbf-2
          Length = 171

 Score = 28.5 bits (62), Expect = 1.1
 Identities = 20/65 (30%), Positives = 31/65 (46%), Gaps = 17/65 (26%)

Query: 204 LSSSAIKVSMVGMLSLPILFAAGMSLFDTLDGAFMLKAYDWAFKTPLRKIYYNISITALS 263
           L S A K+S  GM+ L    AAG            ++ YDW+     RK  +++S+T + 
Sbjct: 29  LDSGAFKLSREGMVMLQFAPAAG------------VRQYDWS-----RKQVFSLSVTEIG 71

Query: 264 VFIAL 268
             I+L
Sbjct: 72  SIISL 76



>pdb|1L3A|B Chain B, Structure Of The Plant Transcriptional Regulator Pbf-2
          Length = 170

 Score = 28.5 bits (62), Expect = 1.1
 Identities = 20/65 (30%), Positives = 31/65 (46%), Gaps = 17/65 (26%)

Query: 204 LSSSAIKVSMVGMLSLPILFAAGMSLFDTLDGAFMLKAYDWAFKTPLRKIYYNISITALS 263
           L S A K+S  GM+ L    AAG            ++ YDW+     RK  +++S+T + 
Sbjct: 29  LDSGAFKLSREGMVMLQFAPAAG------------VRQYDWS-----RKQVFSLSVTEIG 71

Query: 264 VFIAL 268
             I+L
Sbjct: 72  SIISL 76



>pdb|1G6W|D Chain D, Crystal Structure Of The Globular Region Of The Prion
           Protein Ure2 From The Yeast Saccaromyces Cerevisiae
 pdb|1G6Y|B Chain B, Crystal Structure Of The Globular Region Of The Prion
           Protien Ure2 From Yeast Saccharomyces Cerevisiae
 pdb|1G6W|C Chain C, Crystal Structure Of The Globular Region Of The Prion
           Protein Ure2 From The Yeast Saccaromyces Cerevisiae
 pdb|1G6Y|A Chain A, Crystal Structure Of The Globular Region Of The Prion
           Protien Ure2 From Yeast Saccharomyces Cerevisiae
 pdb|1G6W|B Chain B, Crystal Structure Of The Globular Region Of The Prion
           Protein Ure2 From The Yeast Saccaromyces Cerevisiae
 pdb|1G6W|A Chain A, Crystal Structure Of The Globular Region Of The Prion
           Protein Ure2 From The Yeast Saccaromyces Cerevisiae
          Length = 261

 Score = 25.4 bits (54), Expect = 9.4
 Identities = 17/74 (22%), Positives = 33/74 (43%), Gaps = 1/74 (1%)

Query: 30  FYAAASMAYMLGAKHAFDADHIACIDNTIRKLTQQGKNAYGVGFYFSMGHSSVVILMTII 89
           F+  +  A M+G    F   H   I + + + T + +  YGV    ++      ++M + 
Sbjct: 124 FFQTSGHAPMIGQALHFRYFHSQKIASAVERYTDEVRRVYGV-VEMALAERREALVMELD 182

Query: 90  SAFAIAWAKEHTPM 103
           +  A A++   TPM
Sbjct: 183 TENAAAYSAGTTPM 196



>pdb|1K0B|D Chain D, Ure2p In Complex With Glutathione
 pdb|1JZR|D Chain D, Ure2p In Complex With Glutathione
 pdb|1K0B|C Chain C, Ure2p In Complex With Glutathione
 pdb|1JZR|C Chain C, Ure2p In Complex With Glutathione
 pdb|1JZR|B Chain B, Ure2p In Complex With Glutathione
 pdb|1K0B|B Chain B, Ure2p In Complex With Glutathione
 pdb|1K0D|C Chain C, Ure2p In Complex With Glutathione
 pdb|1K0C|C Chain C, Ure2p In Complex With S-P-Nitrobenzylglutathione
 pdb|1K0D|D Chain D, Ure2p In Complex With Glutathione
 pdb|1K0C|D Chain D, Ure2p In Complex With S-P-Nitrobenzylglutathione
 pdb|1JZR|A Chain A, Ure2p In Complex With Glutathione
 pdb|1K0A|A Chain A, Ure2p In Complex With S-Hexylglutathione
 pdb|1K0D|B Chain B, Ure2p In Complex With Glutathione
 pdb|1K0C|B Chain B, Ure2p In Complex With S-P-Nitrobenzylglutathione
 pdb|1K0C|A Chain A, Ure2p In Complex With S-P-Nitrobenzylglutathione
 pdb|1K0B|A Chain A, Ure2p In Complex With Glutathione
 pdb|1K0A|B Chain B, Ure2p In Complex With S-Hexylglutathione
 pdb|1K0D|A Chain A, Ure2p In Complex With Glutathione
          Length = 260

 Score = 25.4 bits (54), Expect = 9.4
 Identities = 17/74 (22%), Positives = 33/74 (43%), Gaps = 1/74 (1%)

Query: 30  FYAAASMAYMLGAKHAFDADHIACIDNTIRKLTQQGKNAYGVGFYFSMGHSSVVILMTII 89
           F+  +  A M+G    F   H   I + + + T + +  YGV    ++      ++M + 
Sbjct: 123 FFQTSGHAPMIGQALHFRYFHSQKIASAVERYTDEVRRVYGV-VEMALAERREALVMELD 181

Query: 90  SAFAIAWAKEHTPM 103
           +  A A++   TPM
Sbjct: 182 TENAAAYSAGTTPM 195



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.329    0.143    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,644,999
Number of Sequences: 13198
Number of extensions: 58620
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 150
Number of HSP's gapped (non-prelim): 6
length of query: 331
length of database: 2,899,336
effective HSP length: 89
effective length of query: 242
effective length of database: 1,724,714
effective search space: 417380788
effective search space used: 417380788
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (25.4 bits)