BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645692|ref|NP_207869.1| hypothetical protein
[Helicobacter pylori 26695]
(228 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta >g... 28 0.67
pdb|1BXT|B Chain B, Streptococcal Superantigen (Ssa) From S... 27 2.0
pdb|1GGI|H Chain H, Igg2a Fab Fragment (50.1) Complex With ... 27 2.6
pdb|1GGB|H Chain H, Igg2a Fab Fragment (50.1) >gi|442936|pd... 27 2.6
pdb|1BI9|D Chain D, Retinal Dehydrogenase Type Two With Nad... 27 2.6
pdb|1AG8|A Chain A, Aldehyde Dehydrogenase From Bovine Mito... 26 3.3
pdb|1D7O|A Chain A, Crystal Structure Of Brassica Napus Eno... 25 5.7
pdb|1ENO| Brassica Napus Enoyl Acp ReductaseNAD BINARY CO... 25 5.7
pdb|1BQY|A Chain A, Plasminogen Activator (Tsv-Pa) From Sna... 25 7.5
pdb|1MJH|B Chain B, Structure-Based Assignment Of The Bioch... 25 9.7
pdb|1DQP|A Chain A, Crystal Structure Of Giardia Guanine Ph... 25 9.7
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 28.5 bits (62), Expect = 0.67
Identities = 33/140 (23%), Positives = 63/140 (44%), Gaps = 7/140 (5%)
Query: 66 KDYESNKKEILKIVSESKQTISEEQ--IFLFPNNQDDGDLETLLLKIANHKEFINCFESY 123
K E KE+ + S+ ++ + ++ +FL P D + + LK E I+ E Y
Sbjct: 35 KKQEKELKELERKGSKRREELLQKYSVLFLEPVYPRGLDSQVVELKERLEXELIHLGEEY 94
Query: 124 LDCIKKKEHYKPIKNIRKSKWYAYLEALGLEKFFQYTWDTKKKNNKKKLIIDDKDGDEIE 183
D I++++ + K A + + K + + ++ K+ KKKL + K D I+
Sbjct: 95 HDGIRRRKEQHATEQTAKITELAREKQIAELKALKESSESNIKDIKKKL--EAKRLDRIQ 152
Query: 184 IKDQYKGD---YEELKKVLD 200
+ + D E LKK ++
Sbjct: 153 VXXRSTSDKAAQERLKKEIN 172
>pdb|1BXT|B Chain B, Streptococcal Superantigen (Ssa) From Streptococcus
Pyogenes
pdb|1BXT|A Chain A, Streptococcal Superantigen (Ssa) From Streptococcus
Pyogenes
Length = 234
Score = 26.9 bits (58), Expect = 2.0
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 29 FPIKNFKVQNVDG-KDNLSKRLLEIEKYDKTLIIFDADKDYESNKKEILKIVSESKQTIS 87
FPIK+ K++N D K + + L + +K + IF ++ Y E +K+T
Sbjct: 51 FPIKDLKLKNYDSVKTEFNSKDLATKYKNKDVDIFGSNYYYNCYYSE-GNSCKNAKKTCM 109
Query: 88 EEQIFLFPNNQDDGDLETLLLKIANHKEFINCFE 121
+ NQ +G + +K+ E I F+
Sbjct: 110 YGGVTEHHRNQIEGKFPNITVKVYEDNENILSFD 143
>pdb|1GGI|H Chain H, Igg2a Fab Fragment (50.1) Complex With 16-Residue Peptide
(Residues 311-328 Of Hiv-1 Gp120 (Mn Isolate))
pdb|1GGI|J Chain J, Igg2a Fab Fragment (50.1) Complex With 16-Residue Peptide
(Residues 311-328 Of Hiv-1 Gp120 (Mn Isolate))
Length = 222
Score = 26.6 bits (57), Expect = 2.6
Identities = 19/46 (41%), Positives = 23/46 (49%), Gaps = 4/46 (8%)
Query: 60 IIFDADKDYESNKKEILKIVSESKQTISEEQIFLFPNNQDDGDLET 105
I +D DK Y + K LKI SK T S Q+FL + D D T
Sbjct: 53 IFWDGDKRYNPSLKSRLKI---SKDT-SNNQVFLKITSVDTADTAT 94
>pdb|1GGB|H Chain H, Igg2a Fab Fragment (50.1)
pdb|1GGC|H Chain H, Igg2a Fab Fragment (50.1)
Length = 215
Score = 26.6 bits (57), Expect = 2.6
Identities = 19/46 (41%), Positives = 23/46 (49%), Gaps = 4/46 (8%)
Query: 60 IIFDADKDYESNKKEILKIVSESKQTISEEQIFLFPNNQDDGDLET 105
I +D DK Y + K LKI SK T S Q+FL + D D T
Sbjct: 53 IFWDGDKRYNPSLKSRLKI---SKDT-SNNQVFLKITSVDTADTAT 94
>pdb|1BI9|D Chain D, Retinal Dehydrogenase Type Two With Nad Bound
pdb|1BI9|C Chain C, Retinal Dehydrogenase Type Two With Nad Bound
pdb|1BI9|A Chain A, Retinal Dehydrogenase Type Two With Nad Bound
pdb|1BI9|B Chain B, Retinal Dehydrogenase Type Two With Nad Bound
Length = 499
Score = 26.6 bits (57), Expect = 2.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 36 VQNVDGKDNLSKRLLEIEKYDKTLIIFDADKDY 68
+Q G+ NL + LE+ +I DAD DY
Sbjct: 252 IQEAAGRSNLKRVTLELGGKSPNIIFADADLDY 284
>pdb|1AG8|A Chain A, Aldehyde Dehydrogenase From Bovine Mitochondria
pdb|1AG8|B Chain B, Aldehyde Dehydrogenase From Bovine Mitochondria
pdb|1AG8|C Chain C, Aldehyde Dehydrogenase From Bovine Mitochondria
pdb|1AG8|D Chain D, Aldehyde Dehydrogenase From Bovine Mitochondria
pdb|1A4Z|A Chain A, Aldehyde Dehydrogenase From Bovine Mitochondria Complex
With Nad (Reduced) And Samarium (Iii)
pdb|1A4Z|B Chain B, Aldehyde Dehydrogenase From Bovine Mitochondria Complex
With Nad (Reduced) And Samarium (Iii)
pdb|1A4Z|C Chain C, Aldehyde Dehydrogenase From Bovine Mitochondria Complex
With Nad (Reduced) And Samarium (Iii)
pdb|1A4Z|D Chain D, Aldehyde Dehydrogenase From Bovine Mitochondria Complex
With Nad (Reduced) And Samarium (Iii)
Length = 499
Score = 26.2 bits (56), Expect = 3.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 36 VQNVDGKDNLSKRLLEIEKYDKTLIIFDADKDY 68
+Q GK NL + LEI +I+ DAD D+
Sbjct: 252 IQVAAGKSNLKRVTLEIGGKSPNIIMSDADMDW 284
>pdb|1D7O|A Chain A, Crystal Structure Of Brassica Napus Enoyl Acyl Carrier
Protein Reductase Complexed With Nad And Triclosan
Length = 297
Score = 25.4 bits (54), Expect = 5.7
Identities = 18/67 (26%), Positives = 30/67 (43%), Gaps = 3/67 (4%)
Query: 49 LLEIEKYDKTLIIFDADKDYESNKKEILKIVSESKQTISEEQIFLFPNNQDDGDLETLLL 108
L+EI+K +FD +D + K + S T+ E + QD G ++ L+
Sbjct: 69 LMEIKKVYPLDAVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECV---RQDFGSIDILVH 125
Query: 109 KIANHKE 115
+AN E
Sbjct: 126 SLANGPE 132
>pdb|1ENO| Brassica Napus Enoyl Acp ReductaseNAD BINARY COMPLEX AT Ph 8.0 And
Room Temperature
pdb|1ENP| Brassica Napus Enoyl Acp ReductaseNADH BINARY COMPLEX AT Ph 8.0
And Room Temperature
Length = 312
Score = 25.4 bits (54), Expect = 5.7
Identities = 18/67 (26%), Positives = 30/67 (43%), Gaps = 3/67 (4%)
Query: 49 LLEIEKYDKTLIIFDADKDYESNKKEILKIVSESKQTISEEQIFLFPNNQDDGDLETLLL 108
L+EI+K +FD +D + K + S T+ E + QD G ++ L+
Sbjct: 79 LMEIKKVYPLDAVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECV---RQDFGSIDILVH 135
Query: 109 KIANHKE 115
+AN E
Sbjct: 136 SLANGPE 142
>pdb|1BQY|A Chain A, Plasminogen Activator (Tsv-Pa) From Snake Venom
pdb|1BQY|B Chain B, Plasminogen Activator (Tsv-Pa) From Snake Venom
Length = 234
Score = 25.0 bits (53), Expect = 7.5
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 77 KIVSESKQTISEEQIFLFPNNQ--DDGDLETLLLKI 110
KI++E +QT ++ F PN + D+ D + +L+K+
Sbjct: 57 KILNEDEQTRDPKEKFFCPNRKKDDEVDKDIMLIKL 92
>pdb|1MJH|B Chain B, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
pdb|1MJH|A Chain A, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
Length = 162
Score = 24.6 bits (52), Expect = 9.7
Identities = 21/78 (26%), Positives = 37/78 (46%), Gaps = 3/78 (3%)
Query: 67 DYESNKKEILKIVSESKQTISEEQIFLFPNNQDD---GDLETLLLKIANHKEFINCFESY 123
D+ + LK V K +EE I L ++ + D+ +LLL +A + + FE+
Sbjct: 13 DFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENE 72
Query: 124 LDCIKKKEHYKPIKNIRK 141
L +E ++NI+K
Sbjct: 73 LKNKLTEEAKNKMENIKK 90
>pdb|1DQP|A Chain A, Crystal Structure Of Giardia Guanine
Phosphoribosyltransferase Complexed With Immucilling
pdb|1DQN|A Chain A, Crystal Structure Of Giardia Guanine
Phosphoribosyltransferase Complexed With A Transition
State Analogue
pdb|1DQN|B Chain B, Crystal Structure Of Giardia Guanine
Phosphoribosyltransferase Complexed With A Transition
State Analogue
pdb|1DQP|B Chain B, Crystal Structure Of Giardia Guanine
Phosphoribosyltransferase Complexed With Immucilling
Length = 230
Score = 24.6 bits (52), Expect = 9.7
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 68 YESNKKEILKIVSES-KQTISEEQIFLFPNNQDDGDLETLLLKIANHKEFINCFESYLDC 126
Y+ ++E + E KQ + ++ L D G + + H + +CF +D
Sbjct: 97 YKGTRQESVVFDEEDLKQLKEKREVVLIDEYVDSGHTIFSIQEQIKHAKICSCFVKDVDA 156
Query: 127 IKK 129
IKK
Sbjct: 157 IKK 159
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.139 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,395,868
Number of Sequences: 13198
Number of extensions: 61988
Number of successful extensions: 458
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 456
Number of HSP's gapped (non-prelim): 11
length of query: 228
length of database: 2,899,336
effective HSP length: 85
effective length of query: 143
effective length of database: 1,777,506
effective search space: 254183358
effective search space used: 254183358
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)