BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645693|ref|NP_207870.1| hypothetical protein
[Helicobacter pylori 26695]
(370 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1II8|A Chain A, Crystal Structure Of The P. Furiosus Ra... 40 4e-04
pdb|1F2U|A Chain A, Crystal Structure Of Rad50 Abc-Atpase >... 40 4e-04
pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritim... 37 0.003
pdb|1DMT|A Chain A, Structure Of Human Neutral Endopeptidas... 28 1.3
pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma ... 27 3.7
pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of... 27 3.7
pdb|1ALA| Annexin V 27 4.8
pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of... 27 4.8
pdb|1DVG|A Chain A, Crystal Structure Of Rat Heme Oxygenase... 27 4.8
pdb|1IRM|A Chain A, Crystal Structure Of Apo Heme Oxygenase... 26 6.3
pdb|1K3V|A Chain A, Porcine Parvovirus Capsid 26 6.3
pdb|1CKN|B Chain B, Structure Of Guanylylated Mrna Capping ... 26 8.2
pdb|1CKN|A Chain A, Structure Of Guanylylated Mrna Capping ... 26 8.2
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat... 26 8.2
>pdb|1II8|A Chain A, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 195
Score = 40.0 bits (92), Expect = 4e-04
Identities = 19/46 (41%), Positives = 33/46 (71%), Gaps = 2/46 (4%)
Query: 2 IQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVG 47
++ V +KNF++ +T ++ +N+I GQN +GKS+LL+A+ LVG
Sbjct: 3 LERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAI--LVG 46
>pdb|1F2U|A Chain A, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|C Chain C, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2T|A Chain A, Crystal Structure Of Atp-Free Rad50 Abc-Atpase
Length = 149
Score = 40.0 bits (92), Expect = 4e-04
Identities = 19/46 (41%), Positives = 33/46 (71%), Gaps = 2/46 (4%)
Query: 2 IQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVG 47
++ V +KNF++ +T ++ +N+I GQN +GKS+LL+A+ LVG
Sbjct: 3 LERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAI--LVG 46
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 37.4 bits (85), Expect = 0.003
Identities = 18/63 (28%), Positives = 36/63 (56%), Gaps = 1/63 (1%)
Query: 2 IQSVRIKNFKNFKNTKIDGFT-KLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIY 60
++ + +K FK+F + GF+ ++ I G N +GKSN+++A+ ++ G+ E +
Sbjct: 3 LKKLYLKGFKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKF 62
Query: 61 DNI 63
D I
Sbjct: 63 DMI 65
>pdb|1DMT|A Chain A, Structure Of Human Neutral Endopeptidase Complexed With
Phosphoramidon
Length = 696
Score = 28.5 bits (62), Expect = 1.3
Identities = 36/158 (22%), Positives = 64/158 (39%), Gaps = 34/158 (21%)
Query: 176 QKLLPFESAVIIPSDVVYRQAHMIQAVSKICSNNQLEEELNKHLNQFDNNIQAISFNTNN 235
+K L + + P D+V + NN+ E K F+N IQ + F+ +
Sbjct: 417 EKALAIKERIGYPDDIVSNDNKL---------NNEYLELNYKEDEYFENIIQNLKFSQSK 467
Query: 236 QLKLKVKDIKEKVPLSVFGDGLKKYLHIVSAFMADNAKTI-----------YIDEVENGL 284
QL K ++EKV + G +V+AF + I + + N L
Sbjct: 468 QL----KKLREKVDKDEWISGAA----VVNAFYSSGRNQIVFPAGILQPPFFSAQQSNSL 519
Query: 285 HFSRMRLLLKNTI------DFINNNKDGNLQVFMTTHS 316
++ + +++ + I + N NKDG+L + T S
Sbjct: 520 NYGGIGMVIGHEITHGFDDNGRNFNKDGDLVDWWTQQS 557
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 26.9 bits (58), Expect = 3.7
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 16 TKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIYDNIRKEPLTSESKSL 75
TK+D + + N GK L ++ + +H V+ ++ EP+ + K +
Sbjct: 295 TKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQELKVEPI--KRKEV 352
Query: 76 MFYGLDTKEEIQIVTTLDNNQ-TLDLQIKFIASENQKVIESQII 118
+ + T + +VT L ++ + LQI A +V S+ I
Sbjct: 353 LLLNVGTARTMGLVTGLGKDEIEVKLQIPVCAEPGDRVAISRQI 396
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
Length = 410
Score = 26.9 bits (58), Expect = 3.7
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 16 TKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIYDNIRKEPLTSESKSL 75
TK+D + + N GK L ++ + +H V+ ++ EP+ + K +
Sbjct: 295 TKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQELKVEPI--KRKEV 352
Query: 76 MFYGLDTKEEIQIVTTLDNNQ-TLDLQIKFIASENQKVIESQII 118
+ + T + +VT L ++ + LQI A +V S+ I
Sbjct: 353 LLLNVGTARTMGLVTGLGKDEIEVKLQIPVCAEPGDRVAISRQI 396
>pdb|1ALA| Annexin V
Length = 321
Score = 26.6 bits (57), Expect = 4.8
Identities = 19/66 (28%), Positives = 32/66 (47%), Gaps = 10/66 (15%)
Query: 11 KNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIYDNIRKEPLTS 70
K K D T L I+T +NNA + + A L G+ ++ D+++ E LT
Sbjct: 26 KAMKGMGTDEETILKILTSRNNAQRQEIASAFKTLFGR---------DLVDDLKSE-LTG 75
Query: 71 ESKSLM 76
+ ++LM
Sbjct: 76 KFETLM 81
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 26.6 bits (57), Expect = 4.8
Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 3/104 (2%)
Query: 16 TKIDGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIYDNIRKEPLTSESKSL 75
TK+D + + N GK L ++ + +H V+ ++ EP+ + K +
Sbjct: 295 TKLDPYLTKGDLXAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQELKVEPI--KRKEV 352
Query: 76 MFYGLDTKEEIQIVTTLDNNQ-TLDLQIKFIASENQKVIESQII 118
+ + T +VT L ++ + LQI A +V S+ I
Sbjct: 353 LLLNVGTARTXGLVTGLGKDEIEVKLQIPVCAEPGDRVAISRQI 396
>pdb|1DVG|A Chain A, Crystal Structure Of Rat Heme Oxygenase-1 In Complex With
Heme; Seleleno-Methionine Derivative, Mutated At
M51t,M93l, M155l,M191l.
pdb|1DVG|B Chain B, Crystal Structure Of Rat Heme Oxygenase-1 In Complex With
Heme; Seleleno-Methionine Derivative, Mutated At
M51t,M93l, M155l,M191l
Length = 267
Score = 26.6 bits (57), Expect = 4.8
Identities = 18/77 (23%), Positives = 37/77 (47%), Gaps = 3/77 (3%)
Query: 55 NVLEIYDNIRKEPLTSESKSLMFYGLDTKEEIQIVTTLDNNQTLDLQIKFIASENQKVIE 114
N LE+ + K +T E+K+ ++ EE+Q + T ++ Q +F+ ++
Sbjct: 187 NTLELTPEV-KHRVTEEAKTAFLLNIELFEELQALLTEEHKDQSPSQTEFLRQRPASLV- 244
Query: 115 SQIIPTAEQTQMSSQLN 131
Q +AE + SQ++
Sbjct: 245 -QDTTSAETPRGKSQIS 260
>pdb|1IRM|A Chain A, Crystal Structure Of Apo Heme Oxygenase-1
pdb|1IRM|B Chain B, Crystal Structure Of Apo Heme Oxygenase-1
pdb|1IRM|C Chain C, Crystal Structure Of Apo Heme Oxygenase-1
pdb|1DVE|A Chain A, Crystal Structure Of Rat Heme Oxygenase-1 In Complex With
Heme
Length = 267
Score = 26.2 bits (56), Expect = 6.3
Identities = 18/77 (23%), Positives = 37/77 (47%), Gaps = 3/77 (3%)
Query: 55 NVLEIYDNIRKEPLTSESKSLMFYGLDTKEEIQIVTTLDNNQTLDLQIKFIASENQKVIE 114
N LE+ + K +T E+K+ ++ EE+Q + T ++ Q +F+ ++
Sbjct: 187 NTLEMTPEV-KHRVTEEAKTAFLLNIELFEELQALLTEEHKDQSPSQTEFLRQRPASLV- 244
Query: 115 SQIIPTAEQTQMSSQLN 131
Q +AE + SQ++
Sbjct: 245 -QDTTSAETPRGKSQIS 260
>pdb|1K3V|A Chain A, Porcine Parvovirus Capsid
Length = 579
Score = 26.2 bits (56), Expect = 6.3
Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 18/125 (14%)
Query: 69 TSESKSLMFYGLDTKEEIQIVTTLDNNQTLDLQIKFIASENQKVIESQIIPTAEQTQMSS 128
T + S Y DTK +++ + N++L L K + PT E Q
Sbjct: 258 TGDEFSTGIYHFDTKP-LKLTHSWQTNRSLGLPPKLLTE-----------PTTEGDQHPG 305
Query: 129 QLNFTLKKNNEEIYNDHLNIAKVPNFPPIPNQSGYNRQFKNFDSNQLQKLLPFESAVIIP 188
L N + Y+ +N + P Q GYN + NF+ + PF + ++
Sbjct: 306 TLPAA---NTRKGYHQTINNSYTEATAIRPAQVGYNTPYMNFEYSNGG---PFLTPIVPT 359
Query: 189 SDVVY 193
+D Y
Sbjct: 360 ADTQY 364
>pdb|1CKN|B Chain B, Structure Of Guanylylated Mrna Capping Enzyme Complexed
With Gtp
Length = 330
Score = 25.8 bits (55), Expect = 8.2
Identities = 24/73 (32%), Positives = 38/73 (51%), Gaps = 9/73 (12%)
Query: 245 KEKVPL---SVFGDGLKKYLHIVSAFMADNAKTIYIDE-VENGLHFSRMRLL--LKNTID 298
KE +PL ++ D LKK I + D + +DE V G +F+ +L +TID
Sbjct: 188 KEWIPLEHPTIIKDHLKKANAI---YHTDGLIIMSVDEPVIYGRNFNLFKLKPGTHHTID 244
Query: 299 FINNNKDGNLQVF 311
FI ++DG + +F
Sbjct: 245 FIIMSEDGTIGIF 257
>pdb|1CKN|A Chain A, Structure Of Guanylylated Mrna Capping Enzyme Complexed
With Gtp
pdb|1CKM|A Chain A, Structure Of Two Different Conformations Of Mrna Capping
Enzyme In Complex With Gtp
pdb|1CKM|B Chain B, Structure Of Two Different Conformations Of Mrna Capping
Enzyme In Complex With Gtp
pdb|1CKO| Structure Of Mrna Capping Enzyme In Complex With The Cap Analog
Gpppg
Length = 330
Score = 25.8 bits (55), Expect = 8.2
Identities = 24/73 (32%), Positives = 38/73 (51%), Gaps = 9/73 (12%)
Query: 245 KEKVPL---SVFGDGLKKYLHIVSAFMADNAKTIYIDE-VENGLHFSRMRLL--LKNTID 298
KE +PL ++ D LKK I + D + +DE V G +F+ +L +TID
Sbjct: 188 KEWIPLEHPTIIKDHLKKANAI---YHTDGLIIMSVDEPVIYGRNFNLFKLKPGTHHTID 244
Query: 299 FINNNKDGNLQVF 311
FI ++DG + +F
Sbjct: 245 FIIMSEDGTIGIF 257
>pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3:
A Unique Member Of The Ikappab Protein Family
pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3:
A Unique Member Of The Ikappab Protein Family
Length = 241
Score = 25.8 bits (55), Expect = 8.2
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 19 DGFTKLNIITGQNNAGKSNLLEALYYLVGKSMHPCTNVLEIYDNIRKEPL 68
DG T L+I Q N + L L+ G+ L+IY+N+R+ PL
Sbjct: 8 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-------LDIYNNLRQTPL 50
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.135 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,062,722
Number of Sequences: 13198
Number of extensions: 84041
Number of successful extensions: 199
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 196
Number of HSP's gapped (non-prelim): 14
length of query: 370
length of database: 2,899,336
effective HSP length: 90
effective length of query: 280
effective length of database: 1,711,516
effective search space: 479224480
effective search space used: 479224480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)