BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645694|ref|NP_207871.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
         (189 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1ICW|A  Chain A, Interleukin-8, Mutant With Glu 38 Repla...    30  0.17
pdb|1KFQ|A  Chain A, Crystal Structure Of Exocytosis-Sensiti...    28  0.51
pdb|2IF1|    Human Translation Initiation Factor Eif1, Nmr, ...    25  4.3
pdb|1CZF|A  Chain A, Endo-Polygalacturonase Ii From Aspergil...    24  9.6

>pdb|1ICW|A Chain A, Interleukin-8, Mutant With Glu 38 Replaced By Cys And Cys
           50 Replaced By Ala
 pdb|1ICW|B Chain B, Interleukin-8, Mutant With Glu 38 Replaced By Cys And Cys
           50 Replaced By Ala
          Length = 72

 Score = 30.0 bits (66), Expect = 0.17
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 9/64 (14%)

Query: 125 VKRYSHKVSPKAIQEVVSSKAYYACEKACVITNSYFTQAAQKLAQANEVLLIDRDEWVRF 184
           +K YS    PK I+E+   ++   C   C+I          KL+   E+ L  ++ WV+ 
Sbjct: 10  IKTYSKPFHPKFIKELRVIESGPHCANTCIIV---------KLSDGRELALDPKENWVQR 60

Query: 185 LNEK 188
           + EK
Sbjct: 61  VVEK 64



>pdb|1KFQ|A Chain A, Crystal Structure Of Exocytosis-Sensitive Phosphoprotein,
           Pp63PARAFUSIN (PHOSPHOGLUCOMUTSE) FROM PARAMECIUM. OPEN
           Form
 pdb|1KFQ|B Chain B, Crystal Structure Of Exocytosis-Sensitive Phosphoprotein,
           Pp63PARAFUSIN (PHOSPHOGLUCOMUTSE) FROM PARAMECIUM. OPEN
           Form
 pdb|1KFI|A Chain A, Crystal Structure Of The Exocytosis-Sensitive
           Phosphoprotein, Pp63PARAFUSIN (PHOSPHOGLUCOMUTASE) FROM
           Paramecium
 pdb|1KFI|B Chain B, Crystal Structure Of The Exocytosis-Sensitive
           Phosphoprotein, Pp63PARAFUSIN (PHOSPHOGLUCOMUTASE) FROM
           Paramecium
          Length = 572

 Score = 28.5 bits (62), Expect = 0.51
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 45  LAILGVFSMLVLFQGIISSYKKRQLKRILQKIDAMNGFE-FEEYSKIFFTSKGFEVSITQ 103
           LA++   + L+   G++ + +       L K+ A NG + FE  +   F     +  +  
Sbjct: 329 LAVIAANANLIFKNGLLGAARSMPTSGALDKVAAKNGIKLFETPTGWKFFGNLMDAGLIN 388

Query: 104 KSGD----YGADLIIEKDGIKWAV 123
             G+     G++ I EKDGI WAV
Sbjct: 389 LCGEESFGTGSNHIREKDGI-WAV 411



>pdb|2IF1|   Human Translation Initiation Factor Eif1, Nmr, 29 Structures
          Length = 126

 Score = 25.4 bits (54), Expect = 4.3
 Identities = 14/39 (35%), Positives = 20/39 (50%), Gaps = 2/39 (5%)

Query: 54 LVLFQGIISSYKKRQLKRILQKIDAMNG--FEFEEYSKI 90
          L   QGI   Y K++L +  +K  A NG   E  EY ++
Sbjct: 57 LTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEV 95



>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
 pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
          Length = 362

 Score = 24.3 bits (51), Expect = 9.6
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 5/40 (12%)

Query: 82  FEFEEYSKIFFTSKGFEVSITQKSGDYGADLIIEKDGIKW 121
           F++EE++    +  G  +++T  SG      +I  DG +W
Sbjct: 80  FQYEEWAGPLISMSGEHITVTGASGH-----LINCDGARW 114



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.325    0.139    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 952,048
Number of Sequences: 13198
Number of extensions: 34095
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 90
Number of HSP's gapped (non-prelim): 4
length of query: 189
length of database: 2,899,336
effective HSP length: 83
effective length of query: 106
effective length of database: 1,803,902
effective search space: 191213612
effective search space used: 191213612
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)