BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645695|ref|NP_207872.1| hypothetical protein
[Helicobacter pylori 26695]
(207 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1CEN| Cellulase (Celc) Mutant With Glu 140 Replaced B... 25 6.5
pdb|1QS1|A Chain A, Crystal Structure Of Vegetative Insecti... 25 6.5
pdb|1CEC| Glycosyl Hydrolase, Cellulase, Family A5 OF Cel... 25 6.5
pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botuli... 25 6.5
pdb|1QS2|A Chain A, Crystal Structure Of Vip2 With Nad 25 6.5
>pdb|1CEN| Cellulase (Celc) Mutant With Glu 140 Replaced By Gln Complexed
With Cellohexaose
pdb|1CEO| Cellulase (Celc) Mutant With Glu 140 Replaced By Gln
Length = 343
Score = 25.0 bits (53), Expect = 6.5
Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 20/103 (19%)
Query: 24 LHLKYKDYPKNSALKTAFTLTPPKIFFNARFVPPFYQKEFKKAITQQIAYFLKDKSAFIL 83
L++ +Y LK + I +N F PF+ T Q A++ + A+
Sbjct: 169 LYIGGNNYNSPDELKNLADIDDDYIVYNFHFYNPFF-------FTHQKAHWSESAMAYNR 221
Query: 84 NVS-------------GNVFFSFEENPKDLKAIKERLKKTIEP 113
V N +SF +LK KE L+K ++P
Sbjct: 222 TVKYPGQYEGIEEFVKNNPKYSFMMELNNLKLNKELLRKDLKP 264
>pdb|1QS1|A Chain A, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|B Chain B, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|C Chain C, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|D Chain D, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
Length = 462
Score = 25.0 bits (53), Expect = 6.5
Identities = 22/77 (28%), Positives = 38/77 (48%), Gaps = 9/77 (11%)
Query: 60 QKEFKKAITQQ--IAYFLKDKSAFILNVSGNVFF---SFEENPKDLKAIKERLKKTIEPN 114
+KE+K T++ + FL +K+ N F SFE+ KDLK I + KT N
Sbjct: 81 EKEWKLTATEKGKMNNFLDNKNDIKTNYKEITFSMAGSFEDEIKDLKEIDKMFDKTNLSN 140
Query: 115 ADPKAVMRFLNLQASLI 131
+++ + N++ + I
Sbjct: 141 ----SIITYKNVEPTTI 153
>pdb|1CEC| Glycosyl Hydrolase, Cellulase, Family A5 OF CellulasesGLYCOSYL
HYDROLASES, CLOSTRIDIUM THERMOCELLUM, Endoglucanase C
Mol_id: 1; Molecule: Endoglucanase Celc; Chain: Null;
Synonym: Egc, Cellulase Celc, Endo-1,4-Beta-Glucanase
Celc; Ec: 3.2.1.4; Engineered: Yes; Other_details:
Cellulase Family A5
Length = 343
Score = 25.0 bits (53), Expect = 6.5
Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 20/103 (19%)
Query: 24 LHLKYKDYPKNSALKTAFTLTPPKIFFNARFVPPFYQKEFKKAITQQIAYFLKDKSAFIL 83
L++ +Y LK + I +N F PF+ T Q A++ + A+
Sbjct: 169 LYIGGNNYNSPDELKNLADIDDDYIVYNFHFYNPFF-------FTHQKAHWSESAMAYNR 221
Query: 84 NVS-------------GNVFFSFEENPKDLKAIKERLKKTIEP 113
V N +SF +LK KE L+K ++P
Sbjct: 222 TVKYPGQYEGIEEFVKNNPKYSFMMELNNLKLNKELLRKDLKP 264
>pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With Doxorubicin
pdb|1EPW|A Chain A, Crystal Structure Of Clostridium Neurotoxin Type B
pdb|1F31|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With A Trisaccharide
Length = 1290
Score = 25.0 bits (53), Expect = 6.5
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 35/92 (38%)
Query: 128 ASLILECVPQTTCPFDTLLIPT--AFSVPVYYANRLGDNPSLFSQEDKTYHNALIK---- 181
AS++LE +P+ LLIP AF + Y N+ ++ KT NAL K
Sbjct: 647 ASILLEFIPE-------LLIPVVGAFLLESYIDNK--------NKIIKTIDNALTKRNEK 691
Query: 182 --------------ALNKAYYSLMEGLEKRLN 199
+N +Y++ EG+ K LN
Sbjct: 692 WSDMYGLIVAQWLSTVNTQFYTIKEGMYKALN 723
>pdb|1QS2|A Chain A, Crystal Structure Of Vip2 With Nad
Length = 401
Score = 25.0 bits (53), Expect = 6.5
Identities = 22/77 (28%), Positives = 38/77 (48%), Gaps = 9/77 (11%)
Query: 60 QKEFKKAITQQ--IAYFLKDKSAFILNVSGNVFF---SFEENPKDLKAIKERLKKTIEPN 114
+KE+K T++ + FL +K+ N F SFE+ KDLK I + KT N
Sbjct: 20 EKEWKLTATEKGKMNNFLDNKNDIKTNYKEITFSMAGSFEDEIKDLKEIDKMFDKTNLSN 79
Query: 115 ADPKAVMRFLNLQASLI 131
+++ + N++ + I
Sbjct: 80 ----SIITYKNVEPTTI 92
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.323 0.138 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,126,833
Number of Sequences: 13198
Number of extensions: 41493
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 104
Number of HSP's gapped (non-prelim): 5
length of query: 207
length of database: 2,899,336
effective HSP length: 84
effective length of query: 123
effective length of database: 1,790,704
effective search space: 220256592
effective search space used: 220256592
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)