BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645696|ref|NP_207873.1| multidrug resistance
protein (msbA) [Helicobacter pylori 26695]
(551 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli... 301 2e-82
pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atp... 126 5e-30
pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacteria... 98 2e-21
pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding... 97 6e-21
pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Pe... 92 2e-19
pdb|1G29|1 Chain 1, Malk >gi|12084695|pdb|1G29|2 Chain 2, Malk 76 8e-15
pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc T... 65 3e-11
pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformati... 55 2e-08
pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free ... 55 3e-08
pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Ra... 33 0.063
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase >... 33 0.063
pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B... 33 0.11
pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritim... 32 0.24
pdb|1II8|A Chain A, Crystal Structure Of The P. Furiosus Ra... 28 3.5
pdb|1F2U|A Chain A, Crystal Structure Of Rad50 Abc-Atpase >... 28 3.5
pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesi... 28 3.5
pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-Dependent ... 27 4.5
pdb|1HOW|A Chain A, The X-Ray Crystal Structure Of Sky1p, A... 27 5.9
>pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|B Chain B, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|C Chain C, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|D Chain D, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|E Chain E, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|F Chain F, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|G Chain G, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|H Chain H, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
Length = 582
Score = 301 bits (770), Expect = 2e-82
Identities = 168/538 (31%), Positives = 311/538 (57%), Gaps = 5/538 (0%)
Query: 16 YKSFIVVLFSSLVV-ALSTAWGTYLVKPTLDEIFINKDTHMLKILPFLVILAYLGKSGGM 74
+K+ ++V +L++ A S + L+KP LD+ F D +L +P +VI + +
Sbjct: 23 FKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKTDRSVLVWMPLVVIGLMILRGITS 82
Query: 75 YLGTYFTNFIGLDIVKKIRNTMLESLLKMEMDFFNRTKKGELIARITNDIGLIRASLSNY 134
Y+ +Y +++ +V +R + ++ M + FF++ G L++RIT D + +S S
Sbjct: 83 YVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGA 142
Query: 135 LSESIREGLTIVGLVGVVIYQSPKLALVGLVIMPLAAIPISKIIRKVKKLAKSHQESNAK 194
L +REG +I+GL ++ Y S +L+++ +V+ P+ +I I + ++ + ++K+ Q + +
Sbjct: 143 LITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVSKRFRNISKNMQNTMGQ 202
Query: 195 ITARLSEVFNNVEAIKISNGEKLEHKAFVKENEAFFKIGIKNIAVAEISSPLMEFLGSIA 254
+T ++ + + I G+++E K F K + G+K ++ + IS P+++ + S+A
Sbjct: 203 VTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQGMKMVSASSISDPIIQLIASLA 262
Query: 255 IALVIYLGGNEVIRGHISVGAFFSFITALFMLYTPIKRLTRIVSNFQEALVASDRIHEIL 314
+A V+Y + ++ G +++ L P+K LT + + FQ + A + IL
Sbjct: 263 LAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFTIL 322
Query: 315 EREPAIVDGELTLNNAIHTIEFKKVWLAYTLDNQERYVLNDISLKFQQNEIIALKGESGS 374
+ E +G+ + A +EF+ V +T ++ L +I+LK + +AL G SGS
Sbjct: 323 DSEQEKDEGKRVIERATGDVEFRNV--TFTYPGRDVPALRNINLKIPAGKTVALVGRSGS 380
Query: 375 GKSSLVNLILRLYEPSKGEIFINDQKIESITQKSLREKISVVTQRVFIFNGSVAENVAYG 434
GKS++ +LI R Y+ +GEI ++ + T SLR ++++V+Q V +FN +VA N+AY
Sbjct: 381 GKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYA 440
Query: 435 L--EIDEVKIKECLKKAQALDFVEKMPHGIESVLDEFGANLSGGQRQRIAIARALYKDVQ 492
+ +I+E + A A+DF+ KM +G+++V+ E G LSGGQRQRIAIARAL +D
Sbjct: 441 RTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSP 500
Query: 493 VLIFDEATSALDNNTEESVKQSILELKQNRLIILISHNPSTLKLATKHVKLEHGRLTE 550
+LI DEATSALD +E +++ ++ EL++NR ++I+H ST++ A + V +E G + E
Sbjct: 501 ILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVE 558
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 126 bits (317), Expect = 5e-30
Identities = 75/221 (33%), Positives = 129/221 (57%), Gaps = 5/221 (2%)
Query: 334 IEFKKVWLAYTLDNQERYVLNDISLKFQQNEIIALKGESGSGKSSLVNLILRLYEPSKGE 393
++F+ V AY + + VL ++ + E+ AL G +GSGKS++ L+ LY+P+ G+
Sbjct: 15 VQFQDVSFAYP-NRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ 73
Query: 394 IFINDQKIESITQKSLREKISVVTQRVFIFNGSVAENVAYGLEIDEV--KIKECLKKAQA 451
+ ++ + + + L +++ V Q +F S+ EN+AYGL +I K+ A
Sbjct: 74 LLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGA 133
Query: 452 LDFVEKMPHGIESVLDEFGANLSGGQRQRIAIARALYKDVQVLIFDEATSALDNNTEESV 511
F+ +P G ++ +DE G+ LSGGQRQ +A+ARAL + VLI D+ATSALD N++ V
Sbjct: 134 HSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQV 193
Query: 512 KQSILEL--KQNRLIILISHNPSTLKLATKHVKLEHGRLTE 550
+Q + E + +R ++LI+ + S ++ A + LE G + E
Sbjct: 194 EQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIRE 234
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 98.2 bits (243), Expect = 2e-21
Identities = 64/230 (27%), Positives = 124/230 (53%), Gaps = 23/230 (10%)
Query: 334 IEFKKVWLAYTLDNQERYVLNDISLKFQQNEIIALKGESGSGKSSLVNLILRLYEPSKGE 393
I+ K V Y + + Y L +++L ++ E +++ G SGSGKS+++N+I L +P++GE
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 394 IFINDQKIESITQKSL----REKISVVTQRVFIFNGSVAENVAYGLEIDEVKIKECLKKA 449
++I++ K + L R+KI V Q+ + A ++ V++ K
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTA--------LENVELPLIFKYR 113
Query: 450 QALDFVEKMPHGIESV----LDEFGAN-----LSGGQRQRIAIARALYKDVQVLIFDEAT 500
A+ E+ +E + L+E AN LSGGQ+QR+AIARAL + +++ D+ T
Sbjct: 114 GAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPT 173
Query: 501 SALDNNTEESVKQSILELKQ--NRLIILISHNPSTLKLATKHVKLEHGRL 548
ALD+ T E + Q + +L + + +++++H+ + + + + L+ G +
Sbjct: 174 GALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 96.7 bits (239), Expect = 6e-21
Identities = 68/233 (29%), Positives = 120/233 (51%), Gaps = 29/233 (12%)
Query: 334 IEFKKVWLAYTLDNQERYVLNDISLKFQQNEIIALKGESGSGKSSLVNLILRLYEPSKGE 393
I+ K V Y + Y L +++L ++ E +++ G SGSGKS+ +N+I L +P++GE
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 394 IFINDQKIESITQKSL----REKISVVTQRVFIFNGSVA-ENVAYGL----------EID 438
++I++ K + L R+KI V Q+ + A ENV L E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEER 121
Query: 439 EVKIKECLKKAQALD-FVEKMPHGIESVLDEFGANLSGGQRQRIAIARALYKDVQVLIFD 497
+ ECLK A+ + F P+ LSGGQ+QR+AIARAL + +++ D
Sbjct: 122 RKRALECLKXAELEERFANHKPN-----------QLSGGQQQRVAIARALANNPPIILAD 170
Query: 498 EATSALDNNTEESVKQSILELKQ--NRLIILISHNPSTLKLATKHVKLEHGRL 548
E T ALD+ T E + Q + +L + + +++++H+ + + + + L+ G +
Sbjct: 171 EPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 91.7 bits (226), Expect = 2e-19
Identities = 70/229 (30%), Positives = 125/229 (54%), Gaps = 24/229 (10%)
Query: 343 YTLDNQERY----VLNDISLKFQQNEIIALKGESGSGKSSLVNLILRLYEPSKGEIFIND 398
+ +D +RY VL +SL+ + ++I++ G SGSGKS+ + I L +PS+G I +N
Sbjct: 8 HVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNG 67
Query: 399 QKIESITQKS-------------LREKISVVTQRVFIFNG-SVAENVAYGLEIDEVKIKE 444
Q I + K LR ++++V Q +++ +V ENV I + + +
Sbjct: 68 QNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA-PIQVLGLSK 126
Query: 445 CLKKAQALDFVEKMPHGI-ESVLDEFGANLSGGQRQRIAIARALYKDVQVLIFDEATSAL 503
+ +AL ++ K+ GI E ++ +LSGGQ+QR++IARAL + VL+FDE TSAL
Sbjct: 127 HDARERALKYLAKV--GIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSAL 184
Query: 504 DNNTEESVKQSILEL-KQNRLIILISHNPSTLKLATKHVKLEH-GRLTE 550
D V + + +L ++ + +++++H + + HV H G++ E
Sbjct: 185 DPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 233
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 76.3 bits (186), Expect = 8e-15
Identities = 50/173 (28%), Positives = 98/173 (55%), Gaps = 9/173 (5%)
Query: 353 LNDISLKFQQNEIIALKGESGSGKSSLVNLILRLYEPSKGEIFINDQKI----ESITQKS 408
+ ++SL+ + E + L G SG GK++ + +I L EPS+G+I+I D+ + + I
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 409 LREKISVVTQRVFIF-NGSVAENVAYGLEIDEVKIKECLKKAQALDFVEKMPHGIESVLD 467
I++V Q ++ + +V +N+A+ L++ +V +E ++ + + E + G+ +L+
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR--EVAELL--GLTELLN 134
Query: 468 EFGANLSGGQRQRIAIARALYKDVQVLIFDEATSALDNNTEESVKQSILELKQ 520
LSGGQRQR+A+ RA+ + QV + DE S LD ++ + +L++
Sbjct: 135 RKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR 187
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 64.7 bits (156), Expect = 3e-11
Identities = 59/202 (29%), Positives = 101/202 (49%), Gaps = 8/202 (3%)
Query: 351 YVLNDISLKFQQNEIIALKGESGSGKSSLVNLILRLYEPSKGEIFINDQKIESITQKSL- 409
+ + I LK + +I+ L G +G+GK++ ++ I L KG+I N Q I + +
Sbjct: 20 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVIN 79
Query: 410 REKISVVTQRVFIF-NGSVAENVAYGLEIDEVKIKECLKKAQALDFVEKMPHGIESVLDE 468
R I++V + IF +V EN+ G K KE +K+ L+++ + ++ L +
Sbjct: 80 RXGIALVPEGRRIFPELTVYENLXXGAY--NRKDKEGIKR--DLEWIFSLFPRLKERLKQ 135
Query: 469 FGANLSGGQRQRIAIARALYKDVQVLIFDEATSALDNNTEESVKQSILELKQ-NRLIILI 527
G LSGG++Q +AI RAL ++L DE + L V + I ++ Q I+L+
Sbjct: 136 LGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLV 195
Query: 528 SHNP-STLKLATKHVKLEHGRL 548
N LK+A LE G++
Sbjct: 196 EQNALGALKVAHYGYVLETGQI 217
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 55.1 bits (131), Expect = 2e-08
Identities = 49/194 (25%), Positives = 88/194 (45%), Gaps = 27/194 (13%)
Query: 353 LNDISLKFQQNEIIALKGESGSGKSSLVNLILRLYEPSKGEIFINDQKIESITQKSLREK 412
L+ +S+ + ++ + G +GSGKS+L+N+I + +G ++ ++ IT K E
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENK---DITNKEPAEL 79
Query: 413 ISVVTQRVFIFNGSVAE-NVAYGLEIDEV-----------------KIKECLKKA-QALD 453
R F + E V L I E+ K +E ++KA + L+
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 139
Query: 454 FVEKMPHGIESVLDEFGANLSGGQRQRIAIARALYKDVQVLIFDEATSALDNNTEESVKQ 513
F+ K+ H + D LSGGQ + + I RAL + ++++ DE + + +
Sbjct: 140 FL-KLSH----LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN 194
Query: 514 SILELKQNRLIILI 527
+LELK + LI
Sbjct: 195 HVLELKAKGITFLI 208
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 54.7 bits (130), Expect = 3e-08
Identities = 49/195 (25%), Positives = 91/195 (46%), Gaps = 29/195 (14%)
Query: 353 LNDISLKFQQNEIIALKGESGSGKSSLVNLILRLYEPSKGEIFINDQKIESITQKSLREK 412
L+ +S+ + ++ + G +GSGKS+L+N+I + +G ++ + + IT K E
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFEN---KDITNKEPAEL 79
Query: 413 ISVVTQRVF-----IFNGSVAENVAYGLEIDE--------------VKIKECLKKA-QAL 452
R F + +V EN+ G EI+ K +E ++KA + L
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIG-EINPGESPLNSLFYKKWIPKEEEMVEKAFKIL 138
Query: 453 DFVEKMPHGIESVLDEFGANLSGGQRQRIAIARALYKDVQVLIFDEATSALDNNTEESVK 512
+F+ K+ H + D LSGGQ + + I RAL + ++++ D+ + + +
Sbjct: 139 EFL-KLSH----LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIF 193
Query: 513 QSILELKQNRLIILI 527
+LELK + LI
Sbjct: 194 NHVLELKAKGITFLI 208
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 33.5 bits (75), Expect = 0.063
Identities = 31/85 (36%), Positives = 46/85 (53%), Gaps = 13/85 (15%)
Query: 473 LSGGQRQ------RIAIARALYKDVQVLIFDEATSALDNNTEESVKQSILE--LKQNRLI 524
LSGG+R R+A++ L ++ +LI DE T LD + +I+E LK+ +
Sbjct: 84 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKL-ITIMERYLKKIPQV 142
Query: 525 ILISHNPSTLKLATKHV---KLEHG 546
IL+SH+ LK A HV LE+G
Sbjct: 143 ILVSHD-EELKDAADHVIRISLENG 166
>pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2T|B Chain B, Crystal Structure Of Atp-Free Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 33.5 bits (75), Expect = 0.063
Identities = 31/85 (36%), Positives = 46/85 (53%), Gaps = 13/85 (15%)
Query: 473 LSGGQRQ------RIAIARALYKDVQVLIFDEATSALDNNTEESVKQSILE--LKQNRLI 524
LSGG+R R+A++ L ++ +LI DE T LD + +I+E LK+ +
Sbjct: 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKL-ITIMERYLKKIPQV 116
Query: 525 ILISHNPSTLKLATKHV---KLEHG 546
IL+SH+ LK A HV LE+G
Sbjct: 117 ILVSHD-EELKDAADHVIRISLENG 140
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 32.7 bits (73), Expect = 0.11
Identities = 48/205 (23%), Positives = 86/205 (41%), Gaps = 22/205 (10%)
Query: 346 DNQERYVLNDISLKFQQNEIIALKGESGSGKSSLVNLILRLYEPSKGEIFINDQKIESIT 405
D E L +S + + EI+ L G +G+GKS+L+ KG I Q +E+ +
Sbjct: 9 DVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAG-XTSGKGSIQFAGQPLEAWS 67
Query: 406 QKSLREKISVVTQRVFIFNGSVAENVAYGLEI---DEVKIKECLKKAQALDFVEKMPHGI 462
L + ++Q+ A V + L + D+ + + A AL +K+
Sbjct: 68 ATKLALHRAYLSQQQ---TPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRST 124
Query: 463 ESVLDEFGANLSGGQRQRIAIARALYKDV-------QVLIFDEATSALDNNTEESVKQSI 515
LSGG+ QR+ +A + + Q+L+ DE ++LD + ++ + +
Sbjct: 125 N--------QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKIL 176
Query: 516 LELKQNRLIILISHNPSTLKLATKH 540
L Q L I+ S + L H
Sbjct: 177 SALCQQGLAIVXSSHDLNHTLRHAH 201
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 31.6 bits (70), Expect = 0.24
Identities = 22/78 (28%), Positives = 36/78 (45%), Gaps = 8/78 (10%)
Query: 473 LSGGQRQRIAIARAL----YKDVQVLIFDEATSALDNNTEESVKQSILELKQNRLIILIS 528
LSGG++ + +A K + DE S LD+ E K+ + E ++ I+I+
Sbjct: 220 LSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVIT 279
Query: 529 HNPSTLKLATKHVKLEHG 546
HN K+ + L HG
Sbjct: 280 HN----KIVMEAADLLHG 293
Score = 27.7 bits (60), Expect = 3.5
Identities = 40/176 (22%), Positives = 77/176 (43%), Gaps = 29/176 (16%)
Query: 363 NEIIALKGESGSGKSSLVNLILRLY-EPSKGEIFINDQKIESI--TQKSLREKISVVTQR 419
+ + A+ G +GSGKS++++ I ++ E SK E+ + +K + I ++L S +
Sbjct: 24 DRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRAS-EKFDMIFAGSENLPPAGSAYVEL 82
Query: 420 VFIFNGSVAENVAYGLEIDEVKIKECLKK-AQALDFVEKMPHGIESVLDEFGANLSG--- 475
VF NG +E+ + LK+ + ++ P ++ + D F G
Sbjct: 83 VFEENG------------EEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDF 130
Query: 476 ----GQRQRIAIARALYKDVQVLIFDEATSALDNNTEESVKQSILELKQNRLIILI 527
GQ Q I A +++++ TS + + + V +S NR I L+
Sbjct: 131 YSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF-----NRFISLL 181
>pdb|1II8|A Chain A, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 195
Score = 27.7 bits (60), Expect = 3.5
Identities = 21/59 (35%), Positives = 35/59 (58%), Gaps = 6/59 (10%)
Query: 354 NDISLKFQQNEIIALKGESGSGKSSLVNLIL-RLYEPSKGEIFINDQKIESITQKSLRE 411
+D ++F++ I + G++GSGKSSL++ IL LY P + I D K + T+ R+
Sbjct: 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGLYWPLR----IKDIKKDEFTKVGARD 68
>pdb|1F2U|A Chain A, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|C Chain C, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2T|A Chain A, Crystal Structure Of Atp-Free Rad50 Abc-Atpase
Length = 149
Score = 27.7 bits (60), Expect = 3.5
Identities = 21/59 (35%), Positives = 35/59 (58%), Gaps = 6/59 (10%)
Query: 354 NDISLKFQQNEIIALKGESGSGKSSLVNLIL-RLYEPSKGEIFINDQKIESITQKSLRE 411
+D ++F++ I + G++GSGKSSL++ IL LY P + I D K + T+ R+
Sbjct: 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGLYWPLR----IKDIKKDEFTKVGARD 68
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp
Length = 368
Score = 27.7 bits (60), Expect = 3.5
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
Query: 495 IFDEATSALDNNTEESVKQSILELKQNRLIILISHNPST 533
IF++ T DN TE SVK S+LE+ L L+ NPS+
Sbjct: 143 IFEKLT---DNGTEFSVKVSLLEIYNEELFDLL--NPSS 176
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-Dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-Dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
Length = 555
Score = 27.3 bits (59), Expect = 4.5
Identities = 27/97 (27%), Positives = 42/97 (42%), Gaps = 8/97 (8%)
Query: 186 KSHQESNAKITARLSEVFNNVEAIKISNGEKLEHKAFVKENEAFFK--IGIKNIAVAEIS 243
+ Q+ K+ L + FNN+ + N E ++ + +KE FFK G+ I+ E
Sbjct: 8 QERQKYIPKLPNILKKDFNNISLVYGENTEAIQDRQALKE---FFKNTYGLPIISFTEGE 64
Query: 244 SPLMEFLGSIAIALVIYLGGNEVIRGHISVGAFFSFI 280
S L S A+ + I L G GH + F I
Sbjct: 65 SSLS---FSKALNIGIILSGGPAPGGHNVISGVFDAI 98
>pdb|1HOW|A Chain A, The X-Ray Crystal Structure Of Sky1p, An Sr Protein Kinase
In Yeast
Length = 373
Score = 26.9 bits (58), Expect = 5.9
Identities = 19/85 (22%), Positives = 36/85 (42%)
Query: 23 LFSSLVVALSTAWGTYLVKPTLDEIFINKDTHMLKILPFLVILAYLGKSGGMYLGTYFTN 82
++S+ + G +L +P + D H+ +I+ L L G Y T+F +
Sbjct: 218 IWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNS 277
Query: 83 FIGLDIVKKIRNTMLESLLKMEMDF 107
L + K++ LE +L + F
Sbjct: 278 RGLLRNISKLKFWPLEDVLTEKYKF 302
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.138 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,752,166
Number of Sequences: 13198
Number of extensions: 108209
Number of successful extensions: 327
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 19
length of query: 551
length of database: 2,899,336
effective HSP length: 93
effective length of query: 458
effective length of database: 1,671,922
effective search space: 765740276
effective search space used: 765740276
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)