BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644739|ref|NP_206909.1| chaperone and heat shock
protein 70 (dnaK) [Helicobacter pylori 26695]
(620 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exc... 441 e-124
pdb|3HSC| Heat-Shock Cognate 7okd Protein (44kd Atpase N-... 356 4e-99
pdb|1BA1| Heat-Shock Cognate 70kd Protein 44kd Atpase N-T... 356 5e-99
pdb|1NGB| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 355 8e-99
pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Hea... 355 1e-98
pdb|1NGD| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 354 1e-98
pdb|1NGF| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 354 1e-98
pdb|1NGA| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 354 1e-98
pdb|1ATR| Heat-Shock Cognate 70 Kd Protein (44 Kd Atpase ... 354 1e-98
pdb|1NGH| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 354 1e-98
pdb|1NGG| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 354 2e-98
pdb|1ATS| Heat-Shock Cognate 70 Kd Protein (44 Kd Atpase ... 354 2e-98
pdb|1NGC| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 354 2e-98
pdb|1NGE| Heat-Shock Cognate 70kd Protein (44kd Atpase N-... 354 2e-98
pdb|1BA0| Heat-Shock Cognate 70kd Protein 44kd Atpase N-T... 353 2e-98
pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Co... 352 9e-98
pdb|1KAZ| 70kd Heat Shock Cognate Protein Atpase Domain, ... 350 3e-97
pdb|1HJO|A Chain A, Heat-Shock 70kd Protein 42kd Atpase N-T... 350 3e-97
pdb|1KAX| 70kd Heat Shock Cognate Protein Atpase Domain, ... 349 5e-97
pdb|1KAY| 70kd Heat Shock Cognate Protein Atpase Domain, ... 349 5e-97
pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of B... 349 6e-97
pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton He... 348 1e-96
pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton He... 347 2e-96
pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton He... 347 3e-96
pdb|1DKZ|A Chain A, The Substrate Binding Domain Of Dnak In... 244 2e-65
pdb|1DKX|A Chain A, The Substrate Binding Domain Of Dnak In... 243 6e-65
pdb|1BPR| Nmr Structure Of The Substrate Binding Domain O... 230 3e-61
pdb|1CKR|A Chain A, High Resolution Solution Structure Of T... 188 1e-48
pdb|1DG4|A Chain A, Nmr Structure Of The Substrate Binding ... 169 6e-43
pdb|1JCF|A Chain A, Mreb From Thermotoga Maritima, Trigonal... 67 6e-12
pdb|1JCE|A Chain A, Mreb From Thermotoga Maritima 63 1e-10
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 32 0.16
pdb|1JSD|B Chain B, Crystal Structure Of Swine H9 Haemagglu... 31 0.36
pdb|1E4F|T Chain T, Ftsa (Apo Form) From Thermotoga Maritima 30 0.61
pdb|1TNM| Titin Module M5 (Connectin) (Nmr, Minimized Ave... 30 1.0
pdb|1NCT| Titin Module M5, N-Terminally Extended, Nmr >gi... 30 1.0
pdb|1E4G|T Chain T, Ftsa (Atp-Bound Form) From Thermotoga M... 30 1.0
pdb|1IRU|D Chain D, Crystal Structure Of The Mammalian 20s ... 29 1.8
pdb|1QPO|A Chain A, Quinolinate Phosphoribosyl Transferase ... 28 2.3
pdb|1FFK|W Chain W, Crystal Structure Of The Large Ribosoma... 28 3.0
pdb|1L1N|A Chain A, Poliovirus 3c Proteinase >gi|20664255|p... 28 3.0
pdb|1DER|A Chain A, The 2.4 Angstrom Crystal Structure Of T... 28 3.9
pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo... 28 3.9
pdb|1GRL| Mol_id: 1; Molecule: Groel (Hsp60 Class); Chain... 28 3.9
pdb|1OEL|A Chain A, Mol_id: 1; Molecule: Groel (Hsp60 Class... 28 3.9
pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken >gi... 27 5.2
pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondri... 27 6.7
pdb|1JFI|B Chain B, Crystal Structure Of The Nc2-Tbp-Dna Te... 27 6.7
pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine >gi|... 27 6.7
pdb|1EVQ|A Chain A, The Crystal Structure Of The Thermophil... 27 6.7
pdb|1RHI|4 Chain 4, Human Rhinovirus 3 Coat Protein 27 6.7
pdb|1LKV|X Chain X, Crystal Structure Of The Middle And C-T... 27 8.8
pdb|1FJX|A Chain A, Structure Of Ternary Complex Of Hhai Me... 27 8.8
pdb|1JBA|A Chain A, Unmyristoylated Gcap-2 With Three Calci... 27 8.8
pdb|1M0E|A Chain A, Zebularine: A Novel Dna Methylation Inh... 27 8.8
>pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe
Bound To The Atpase Domain Of The Molecular Chaperone
Dnak
Length = 383
Score = 441 bits (1133), Expect = e-124
Identities = 217/382 (56%), Positives = 294/382 (76%), Gaps = 6/382 (1%)
Query: 1 MGKVIGIDLGTTNSAMAVYEGNEAKIIANKEGKNTTPSIVAFTDKGEILVGESAKRQAVT 60
MGK+IGIDLGTTNS +A+ +G +++ N EG TTPSI+A+T GE LVG+ AKRQAVT
Sbjct: 1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVT 60
Query: 61 NPEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDR-NGACAIEISGKVYTPQEISAKIL 119
NP+ T+++IKR++G F +++ + +P+KI+ NG +E+ G+ P +ISA++L
Sbjct: 61 NPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVL 120
Query: 120 MKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALAYG 179
K+K+ AE YLGE VTEAVITVPAYFND+QR+ATK+AG IAGL V RIINEPT+AALAYG
Sbjct: 121 KKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG 180
Query: 180 LDKKESEK-IMVYDLGGGTFDVTVLET----GDNVVEVLATGGDAFLGGDDFDNRVIDFL 234
LDK + I VYDLGGGTFD++++E G+ EVLAT GD LGG+DFD+R+I++L
Sbjct: 181 LDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYL 240
Query: 235 ASEFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKL 294
EFK + GI+++ND +A+QRLKEAAE AK ELSSA +T++NLP+ITADATGPKH+ K+
Sbjct: 241 VEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKV 300
Query: 295 TRAKFESLTEDLMKETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFINKD 354
TRAK ESL EDL+ +I ++ ++DAGL+ ++I +V++VGG TR+P VQ++V F K+
Sbjct: 301 TRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKE 360
Query: 355 LNKSVNPDEVVAVGASIQGGVL 376
K VNPDE VA+GA++QGGVL
Sbjct: 361 PRKDVNPDEAVAIGAAVQGGVL 382
>pdb|3HSC| Heat-Shock Cognate 7okd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3)
pdb|1NGJ| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Complexed With Mg
pdb|1NGI| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Complexed With Ca
pdb|1HPM| 44k Atpase Fragment (N-Terminal) Of 7okda Heat-Shock Cognate
Protein (E.C.3.6.1.3)
Length = 386
Score = 356 bits (914), Expect = 4e-99
Identities = 183/385 (47%), Positives = 264/385 (68%), Gaps = 12/385 (3%)
Query: 2 GKVIGIDLGTTNSAMAVYEGNEAKIIANKEGKNTTPSIVAFTDKGEILVGESAKRQAVTN 61
G +GIDLGTT S + V++ + +IIAN +G TTPS VAFTD E L+G++AK Q N
Sbjct: 4 GPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMN 62
Query: 62 PEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKVYT----PQEISAK 117
P T++ KR++G F++ + K P+ +V+ G +++ K T P+E+S+
Sbjct: 63 PTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSM 122
Query: 118 ILMKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALA 177
+L K+KE AE+YLG++VT AV+TVPAYFNDSQR+ATK+AGTIAGLNVLRIINEPT+AA+A
Sbjct: 123 VLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIA 182
Query: 178 YGLDKK--ESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLA 235
YGLDKK ++++DLGGGTFDV++L D + EV +T GD LGG+DFDNR+++
Sbjct: 183 YGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFI 242
Query: 236 SEFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLT 295
+EFK + +I + A++RL+ A E AK+ LSS+ + I + + +T
Sbjct: 243 AEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGI----DFYTSIT 298
Query: 296 RAKFESLTEDLMKETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFIN-KD 354
RA+FE L DL + T+ +E ++DA L K++I ++V+VGGSTRIPK+Q+ ++ F N K+
Sbjct: 299 RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 358
Query: 355 LNKSVNPDEVVAVGASIQGGVLKGD 379
LNKS+NPDE VA GA++Q +L GD
Sbjct: 359 LNKSINPDEAVAYGAAVQAAILSGD 383
>pdb|1BA1| Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal Mutant With
Cys 17 Replaced By Lys
Length = 386
Score = 356 bits (913), Expect = 5e-99
Identities = 183/385 (47%), Positives = 264/385 (68%), Gaps = 12/385 (3%)
Query: 2 GKVIGIDLGTTNSAMAVYEGNEAKIIANKEGKNTTPSIVAFTDKGEILVGESAKRQAVTN 61
G +GIDLGTT S + V++ + +IIAN +G TTPS VAFTD E L+G++AK Q N
Sbjct: 4 GPAVGIDLGTTYSKVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMN 62
Query: 62 PEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKVYT----PQEISAK 117
P T++ KR++G F++ + K P+ +V+ G +++ K T P+E+S+
Sbjct: 63 PTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSM 122
Query: 118 ILMKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALA 177
+L K+KE AE+YLG++VT AV+TVPAYFNDSQR+ATK+AGTIAGLNVLRIINEPT+AA+A
Sbjct: 123 VLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIA 182
Query: 178 YGLDKK--ESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLA 235
YGLDKK ++++DLGGGTFDV++L D + EV +T GD LGG+DFDNR+++
Sbjct: 183 YGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFI 242
Query: 236 SEFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLT 295
+EFK + +I + A++RL+ A E AK+ LSS+ + I + + +T
Sbjct: 243 AEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGI----DFYTSIT 298
Query: 296 RAKFESLTEDLMKETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFIN-KD 354
RA+FE L DL + T+ +E ++DA L K++I ++V+VGGSTRIPK+Q+ ++ F N K+
Sbjct: 299 RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 358
Query: 355 LNKSVNPDEVVAVGASIQGGVLKGD 379
LNKS+NPDE VA GA++Q +L GD
Sbjct: 359 LNKSINPDEAVAYGAAVQAAILSGD 383
>pdb|1NGB| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Glu 175 Replaced By Gln
(E175q)
Length = 386
Score = 355 bits (911), Expect = 8e-99
Identities = 182/385 (47%), Positives = 264/385 (68%), Gaps = 12/385 (3%)
Query: 2 GKVIGIDLGTTNSAMAVYEGNEAKIIANKEGKNTTPSIVAFTDKGEILVGESAKRQAVTN 61
G +GIDLGTT S + V++ + +IIAN +G TTPS VAFTD E L+G++AK Q N
Sbjct: 4 GPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMN 62
Query: 62 PEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKVYT----PQEISAK 117
P T++ KR++G F++ + K P+ +V+ G +++ K T P+E+S+
Sbjct: 63 PTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSM 122
Query: 118 ILMKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALA 177
+L K+KE AE+YLG++VT AV+TVPAYFNDSQR+ATK+AGTIAGLNVLRIIN+PT+AA+A
Sbjct: 123 VLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINQPTAAAIA 182
Query: 178 YGLDKK--ESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLA 235
YGLDKK ++++DLGGGTFDV++L D + EV +T GD LGG+DFDNR+++
Sbjct: 183 YGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFI 242
Query: 236 SEFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLT 295
+EFK + +I + A++RL+ A E AK+ LSS+ + I + + +T
Sbjct: 243 AEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGI----DFYTSIT 298
Query: 296 RAKFESLTEDLMKETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFIN-KD 354
RA+FE L DL + T+ +E ++DA L K++I ++V+VGGSTRIPK+Q+ ++ F N K+
Sbjct: 299 RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 358
Query: 355 LNKSVNPDEVVAVGASIQGGVLKGD 379
LNKS+NPDE VA GA++Q +L GD
Sbjct: 359 LNKSINPDEAVAYGAAVQAAILSGD 383
>pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 386
Score = 355 bits (910), Expect = 1e-98
Identities = 182/385 (47%), Positives = 264/385 (68%), Gaps = 12/385 (3%)
Query: 2 GKVIGIDLGTTNSAMAVYEGNEAKIIANKEGKNTTPSIVAFTDKGEILVGESAKRQAVTN 61
G +GIDLG+T S + V++ + +IIAN +G TTPS VAFTD E L+G++AK Q N
Sbjct: 4 GPAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMN 62
Query: 62 PEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKVYT----PQEISAK 117
P T++ KR++G F++ + K P+ +V+ G +++ K T P+E+S+
Sbjct: 63 PTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSM 122
Query: 118 ILMKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALA 177
+L K+KE AE+YLG++VT AV+TVPAYFNDSQR+ATK+AGTIAGLNVLRIINEPT+AA+A
Sbjct: 123 VLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIA 182
Query: 178 YGLDKK--ESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLA 235
YGLDKK ++++DLGGGTFDV++L D + EV +T GD LGG+DFDNR+++
Sbjct: 183 YGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFI 242
Query: 236 SEFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLT 295
+EFK + +I + A++RL+ A E AK+ LSS+ + I + + +T
Sbjct: 243 AEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGI----DFYTSIT 298
Query: 296 RAKFESLTEDLMKETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFIN-KD 354
RA+FE L DL + T+ +E ++DA L K++I ++V+VGGSTRIPK+Q+ ++ F N K+
Sbjct: 299 RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 358
Query: 355 LNKSVNPDEVVAVGASIQGGVLKGD 379
LNKS+NPDE VA GA++Q +L GD
Sbjct: 359 LNKSINPDEAVAYGAAVQAAILSGD 383
>pdb|1NGD| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Asp 206 Replaced By Asn
(D206n)
Length = 386
Score = 354 bits (909), Expect = 1e-98
Identities = 182/385 (47%), Positives = 264/385 (68%), Gaps = 12/385 (3%)
Query: 2 GKVIGIDLGTTNSAMAVYEGNEAKIIANKEGKNTTPSIVAFTDKGEILVGESAKRQAVTN 61
G +GIDLGTT S + V++ + +IIAN +G TTPS VAFTD E L+G++AK Q N
Sbjct: 4 GPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMN 62
Query: 62 PEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKVYT----PQEISAK 117
P T++ KR++G F++ + K P+ +V+ G +++ K T P+E+S+
Sbjct: 63 PTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSM 122
Query: 118 ILMKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALA 177
+L K+KE AE+YLG++VT AV+TVPAYFNDSQR+ATK+AGTIAGLNVLRIINEPT+AA+A
Sbjct: 123 VLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIA 182
Query: 178 YGLDKK--ESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLA 235
YGLDKK ++++DLGGGTF+V++L D + EV +T GD LGG+DFDNR+++
Sbjct: 183 YGLDKKVGAERNVLIFDLGGGTFNVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFI 242
Query: 236 SEFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLT 295
+EFK + +I + A++RL+ A E AK+ LSS+ + I + + +T
Sbjct: 243 AEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGI----DFYTSIT 298
Query: 296 RAKFESLTEDLMKETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFIN-KD 354
RA+FE L DL + T+ +E ++DA L K++I ++V+VGGSTRIPK+Q+ ++ F N K+
Sbjct: 299 RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 358
Query: 355 LNKSVNPDEVVAVGASIQGGVLKGD 379
LNKS+NPDE VA GA++Q +L GD
Sbjct: 359 LNKSINPDEAVAYGAAVQAAILSGD 383
>pdb|1NGF| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Asp 199 Replaced By Asn
(D199n)
Length = 386
Score = 354 bits (909), Expect = 1e-98
Identities = 182/385 (47%), Positives = 264/385 (68%), Gaps = 12/385 (3%)
Query: 2 GKVIGIDLGTTNSAMAVYEGNEAKIIANKEGKNTTPSIVAFTDKGEILVGESAKRQAVTN 61
G +GIDLGTT S + V++ + +IIAN +G TTPS VAFTD E L+G++AK Q N
Sbjct: 4 GPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMN 62
Query: 62 PEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKVYT----PQEISAK 117
P T++ KR++G F++ + K P+ +V+ G +++ K T P+E+S+
Sbjct: 63 PTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSM 122
Query: 118 ILMKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALA 177
+L K+KE AE+YLG++VT AV+TVPAYFNDSQR+ATK+AGTIAGLNVLRIINEPT+AA+A
Sbjct: 123 VLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIA 182
Query: 178 YGLDKK--ESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLA 235
YGLDKK +++++LGGGTFDV++L D + EV +T GD LGG+DFDNR+++
Sbjct: 183 YGLDKKVGAERNVLIFNLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFI 242
Query: 236 SEFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLT 295
+EFK + +I + A++RL+ A E AK+ LSS+ + I + + +T
Sbjct: 243 AEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGI----DFYTSIT 298
Query: 296 RAKFESLTEDLMKETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFIN-KD 354
RA+FE L DL + T+ +E ++DA L K++I ++V+VGGSTRIPK+Q+ ++ F N K+
Sbjct: 299 RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 358
Query: 355 LNKSVNPDEVVAVGASIQGGVLKGD 379
LNKS+NPDE VA GA++Q +L GD
Sbjct: 359 LNKSINPDEAVAYGAAVQAAILSGD 383
>pdb|1NGA| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Glu 175 Replaced By Ser
(E175s)
Length = 386
Score = 354 bits (909), Expect = 1e-98
Identities = 182/385 (47%), Positives = 263/385 (68%), Gaps = 12/385 (3%)
Query: 2 GKVIGIDLGTTNSAMAVYEGNEAKIIANKEGKNTTPSIVAFTDKGEILVGESAKRQAVTN 61
G +GIDLGTT S + V++ + +IIAN +G TTPS VAFTD E L+G++AK Q N
Sbjct: 4 GPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMN 62
Query: 62 PEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKVYT----PQEISAK 117
P T++ KR++G F++ + K P+ +V+ G +++ K T P+E+S+
Sbjct: 63 PTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSM 122
Query: 118 ILMKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALA 177
+L K+KE AE+YLG++VT AV+TVPAYFNDSQR+ATK+AGTIAGLNVLRIIN PT+AA+A
Sbjct: 123 VLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINSPTAAAIA 182
Query: 178 YGLDKK--ESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLA 235
YGLDKK ++++DLGGGTFDV++L D + EV +T GD LGG+DFDNR+++
Sbjct: 183 YGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFI 242
Query: 236 SEFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLT 295
+EFK + +I + A++RL+ A E AK+ LSS+ + I + + +T
Sbjct: 243 AEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGI----DFYTSIT 298
Query: 296 RAKFESLTEDLMKETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFIN-KD 354
RA+FE L DL + T+ +E ++DA L K++I ++V+VGGSTRIPK+Q+ ++ F N K+
Sbjct: 299 RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 358
Query: 355 LNKSVNPDEVVAVGASIQGGVLKGD 379
LNKS+NPDE VA GA++Q +L GD
Sbjct: 359 LNKSINPDEAVAYGAAVQAAILSGD 383
>pdb|1ATR| Heat-Shock Cognate 70 Kd Protein (44 Kd Atpase N-Terminal
Fragment) (E.C.3.6.1.3) Mutant With Thr 204 Replaced By
Val (T204v)
Length = 386
Score = 354 bits (909), Expect = 1e-98
Identities = 182/385 (47%), Positives = 263/385 (68%), Gaps = 12/385 (3%)
Query: 2 GKVIGIDLGTTNSAMAVYEGNEAKIIANKEGKNTTPSIVAFTDKGEILVGESAKRQAVTN 61
G +GIDLGTT S + V++ + +IIAN +G TTPS VAFTD E L+G++AK Q N
Sbjct: 4 GPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMN 62
Query: 62 PEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKVYT----PQEISAK 117
P T++ KR++G F++ + K P+ +V+ G +++ K T P+E+S+
Sbjct: 63 PTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSM 122
Query: 118 ILMKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALA 177
+L K+KE AE+YLG++VT AV+TVPAYFNDSQR+ATK+AGTIAGLNVLRIINEPT+AA+A
Sbjct: 123 VLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIA 182
Query: 178 YGLDKK--ESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLA 235
YGLDKK ++++DLGGG FDV++L D + EV +T GD LGG+DFDNR+++
Sbjct: 183 YGLDKKVGAERNVLIFDLGGGVFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFI 242
Query: 236 SEFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLT 295
+EFK + +I + A++RL+ A E AK+ LSS+ + I + + +T
Sbjct: 243 AEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGI----DFYTSIT 298
Query: 296 RAKFESLTEDLMKETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFIN-KD 354
RA+FE L DL + T+ +E ++DA L K++I ++V+VGGSTRIPK+Q+ ++ F N K+
Sbjct: 299 RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 358
Query: 355 LNKSVNPDEVVAVGASIQGGVLKGD 379
LNKS+NPDE VA GA++Q +L GD
Sbjct: 359 LNKSINPDEAVAYGAAVQAAILSGD 383
>pdb|1NGH| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Asp 10 Replaced By Asn (D10n)
Length = 386
Score = 354 bits (909), Expect = 1e-98
Identities = 182/385 (47%), Positives = 264/385 (68%), Gaps = 12/385 (3%)
Query: 2 GKVIGIDLGTTNSAMAVYEGNEAKIIANKEGKNTTPSIVAFTDKGEILVGESAKRQAVTN 61
G +GI+LGTT S + V++ + +IIAN +G TTPS VAFTD E L+G++AK Q N
Sbjct: 4 GPAVGINLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMN 62
Query: 62 PEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKVYT----PQEISAK 117
P T++ KR++G F++ + K P+ +V+ G +++ K T P+E+S+
Sbjct: 63 PTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSM 122
Query: 118 ILMKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALA 177
+L K+KE AE+YLG++VT AV+TVPAYFNDSQR+ATK+AGTIAGLNVLRIINEPT+AA+A
Sbjct: 123 VLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIA 182
Query: 178 YGLDKK--ESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLA 235
YGLDKK ++++DLGGGTFDV++L D + EV +T GD LGG+DFDNR+++
Sbjct: 183 YGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFI 242
Query: 236 SEFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLT 295
+EFK + +I + A++RL+ A E AK+ LSS+ + I + + +T
Sbjct: 243 AEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGI----DFYTSIT 298
Query: 296 RAKFESLTEDLMKETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFIN-KD 354
RA+FE L DL + T+ +E ++DA L K++I ++V+VGGSTRIPK+Q+ ++ F N K+
Sbjct: 299 RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 358
Query: 355 LNKSVNPDEVVAVGASIQGGVLKGD 379
LNKS+NPDE VA GA++Q +L GD
Sbjct: 359 LNKSINPDEAVAYGAAVQAAILSGD 383
>pdb|1NGG| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Asp 10 Replaced By Ser (D10s)
Length = 386
Score = 354 bits (908), Expect = 2e-98
Identities = 182/385 (47%), Positives = 263/385 (68%), Gaps = 12/385 (3%)
Query: 2 GKVIGIDLGTTNSAMAVYEGNEAKIIANKEGKNTTPSIVAFTDKGEILVGESAKRQAVTN 61
G +GI LGTT S + V++ + +IIAN +G TTPS VAFTD E L+G++AK Q N
Sbjct: 4 GPAVGISLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMN 62
Query: 62 PEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKVYT----PQEISAK 117
P T++ KR++G F++ + K P+ +V+ G +++ K T P+E+S+
Sbjct: 63 PTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSM 122
Query: 118 ILMKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALA 177
+L K+KE AE+YLG++VT AV+TVPAYFNDSQR+ATK+AGTIAGLNVLRIINEPT+AA+A
Sbjct: 123 VLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIA 182
Query: 178 YGLDKK--ESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLA 235
YGLDKK ++++DLGGGTFDV++L D + EV +T GD LGG+DFDNR+++
Sbjct: 183 YGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFI 242
Query: 236 SEFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLT 295
+EFK + +I + A++RL+ A E AK+ LSS+ + I + + +T
Sbjct: 243 AEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGI----DFYTSIT 298
Query: 296 RAKFESLTEDLMKETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFIN-KD 354
RA+FE L DL + T+ +E ++DA L K++I ++V+VGGSTRIPK+Q+ ++ F N K+
Sbjct: 299 RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 358
Query: 355 LNKSVNPDEVVAVGASIQGGVLKGD 379
LNKS+NPDE VA GA++Q +L GD
Sbjct: 359 LNKSINPDEAVAYGAAVQAAILSGD 383
>pdb|1ATS| Heat-Shock Cognate 70 Kd Protein (44 Kd Atpase N-Terminal
Fragment) (E.C.3.6.1.3) Mutant With Thr 204 Replaced By
Glu (T204e)
Length = 386
Score = 354 bits (908), Expect = 2e-98
Identities = 182/385 (47%), Positives = 263/385 (68%), Gaps = 12/385 (3%)
Query: 2 GKVIGIDLGTTNSAMAVYEGNEAKIIANKEGKNTTPSIVAFTDKGEILVGESAKRQAVTN 61
G +GIDLGTT S + V++ + +IIAN +G TTPS VAFTD E L+G++AK Q N
Sbjct: 4 GPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMN 62
Query: 62 PEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKVYT----PQEISAK 117
P T++ KR++G F++ + K P+ +V+ G +++ K T P+E+S+
Sbjct: 63 PTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSM 122
Query: 118 ILMKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALA 177
+L K+KE AE+YLG++VT AV+TVPAYFNDSQR+ATK+AGTIAGLNVLRIINEPT+AA+A
Sbjct: 123 VLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIA 182
Query: 178 YGLDKK--ESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLA 235
YGLDKK ++++DLGGG FDV++L D + EV +T GD LGG+DFDNR+++
Sbjct: 183 YGLDKKVGAERNVLIFDLGGGEFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFI 242
Query: 236 SEFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLT 295
+EFK + +I + A++RL+ A E AK+ LSS+ + I + + +T
Sbjct: 243 AEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGI----DFYTSIT 298
Query: 296 RAKFESLTEDLMKETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFIN-KD 354
RA+FE L DL + T+ +E ++DA L K++I ++V+VGGSTRIPK+Q+ ++ F N K+
Sbjct: 299 RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 358
Query: 355 LNKSVNPDEVVAVGASIQGGVLKGD 379
LNKS+NPDE VA GA++Q +L GD
Sbjct: 359 LNKSINPDEAVAYGAAVQAAILSGD 383
>pdb|1NGC| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Asp 206 Replaced By Ser
(D206s)
Length = 386
Score = 354 bits (908), Expect = 2e-98
Identities = 182/385 (47%), Positives = 263/385 (68%), Gaps = 12/385 (3%)
Query: 2 GKVIGIDLGTTNSAMAVYEGNEAKIIANKEGKNTTPSIVAFTDKGEILVGESAKRQAVTN 61
G +GIDLGTT S + V++ + +IIAN +G TTPS VAFTD E L+G++AK Q N
Sbjct: 4 GPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMN 62
Query: 62 PEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKVYT----PQEISAK 117
P T++ KR++G F++ + K P+ +V+ G +++ K T P+E+S+
Sbjct: 63 PTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSM 122
Query: 118 ILMKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALA 177
+L K+KE AE+YLG++VT AV+TVPAYFNDSQR+ATK+AGTIAGLNVLRIINEPT+AA+A
Sbjct: 123 VLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIA 182
Query: 178 YGLDKK--ESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLA 235
YGLDKK ++++DLGGGTF V++L D + EV +T GD LGG+DFDNR+++
Sbjct: 183 YGLDKKVGAERNVLIFDLGGGTFSVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFI 242
Query: 236 SEFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLT 295
+EFK + +I + A++RL+ A E AK+ LSS+ + I + + +T
Sbjct: 243 AEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGI----DFYTSIT 298
Query: 296 RAKFESLTEDLMKETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFIN-KD 354
RA+FE L DL + T+ +E ++DA L K++I ++V+VGGSTRIPK+Q+ ++ F N K+
Sbjct: 299 RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 358
Query: 355 LNKSVNPDEVVAVGASIQGGVLKGD 379
LNKS+NPDE VA GA++Q +L GD
Sbjct: 359 LNKSINPDEAVAYGAAVQAAILSGD 383
>pdb|1NGE| Heat-Shock Cognate 70kd Protein (44kd Atpase N-Terminal Fragment)
(E.C.3.6.1.3) Mutant With Asp 199 Replaced By Ser
(D199s)
Length = 386
Score = 354 bits (908), Expect = 2e-98
Identities = 182/385 (47%), Positives = 263/385 (68%), Gaps = 12/385 (3%)
Query: 2 GKVIGIDLGTTNSAMAVYEGNEAKIIANKEGKNTTPSIVAFTDKGEILVGESAKRQAVTN 61
G +GIDLGTT S + V++ + +IIAN +G TTPS VAFTD E L+G++AK Q N
Sbjct: 4 GPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMN 62
Query: 62 PEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKVYT----PQEISAK 117
P T++ KR++G F++ + K P+ +V+ G +++ K T P+E+S+
Sbjct: 63 PTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSM 122
Query: 118 ILMKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALA 177
+L K+KE AE+YLG++VT AV+TVPAYFNDSQR+ATK+AGTIAGLNVLRIINEPT+AA+A
Sbjct: 123 VLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIA 182
Query: 178 YGLDKK--ESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLA 235
YGLDKK ++++ LGGGTFDV++L D + EV +T GD LGG+DFDNR+++
Sbjct: 183 YGLDKKVGAERNVLIFSLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFI 242
Query: 236 SEFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLT 295
+EFK + +I + A++RL+ A E AK+ LSS+ + I + + +T
Sbjct: 243 AEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGI----DFYTSIT 298
Query: 296 RAKFESLTEDLMKETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFIN-KD 354
RA+FE L DL + T+ +E ++DA L K++I ++V+VGGSTRIPK+Q+ ++ F N K+
Sbjct: 299 RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 358
Query: 355 LNKSVNPDEVVAVGASIQGGVLKGD 379
LNKS+NPDE VA GA++Q +L GD
Sbjct: 359 LNKSINPDEAVAYGAAVQAAILSGD 383
>pdb|1BA0| Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal 1nge 3
Length = 386
Score = 353 bits (907), Expect = 2e-98
Identities = 182/385 (47%), Positives = 263/385 (68%), Gaps = 12/385 (3%)
Query: 2 GKVIGIDLGTTNSAMAVYEGNEAKIIANKEGKNTTPSIVAFTDKGEILVGESAKRQAVTN 61
G +GIDLGTT S + V++ + +IIAN +G TTPS VAFTD E L+G++AK Q N
Sbjct: 4 GPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMN 62
Query: 62 PEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKVYT----PQEISAK 117
P T++ KR++G F++ + K P+ +V+ G +++ K T P+E+S+
Sbjct: 63 PTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSM 122
Query: 118 ILMKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALA 177
+L K+KE AE+YLG++VT AV+TVPAYFNDSQR+ATK+AGTIAGLNVLRIINEPT+AA+A
Sbjct: 123 VLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIA 182
Query: 178 YGLDKK--ESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLA 235
YGLDKK ++++DLGGGTF V++L D + EV +T GD LGG+DFDNR+++
Sbjct: 183 YGLDKKVGAERNVLIFDLGGGTFKVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFI 242
Query: 236 SEFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLT 295
+EFK + +I + A++RL+ A E AK+ LSS+ + I + + +T
Sbjct: 243 AEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGI----DFYTSIT 298
Query: 296 RAKFESLTEDLMKETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFIN-KD 354
RA+FE L DL + T+ +E ++DA L K++I ++V+VGGSTRIPK+Q+ ++ F N K+
Sbjct: 299 RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 358
Query: 355 LNKSVNPDEVVAVGASIQGGVLKGD 379
LNKS+NPDE VA GA++Q +L GD
Sbjct: 359 LNKSINPDEAVAYGAAVQAAILSGD 383
>pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The
Hsc70 Atpase Domain
Length = 400
Score = 352 bits (902), Expect = 9e-98
Identities = 181/382 (47%), Positives = 262/382 (68%), Gaps = 12/382 (3%)
Query: 2 GKVIGIDLGTTNSAMAVYEGNEAKIIANKEGKNTTPSIVAFTDKGEILVGESAKRQAVTN 61
G +GIDLGTT S + V++ + +IIAN +G TTPS VAFTD E L+G++AK Q N
Sbjct: 23 GPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMN 81
Query: 62 PEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKVYT----PQEISAK 117
P T++ KR++G F++ + K P+ +V+ G +++ K T P+E+S+
Sbjct: 82 PTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSM 141
Query: 118 ILMKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALA 177
+L K+KE AE+YLG++VT AV+TVPAYFNDSQR+ATK+AGTIAGLNVLRIINEPT+AA+A
Sbjct: 142 VLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIA 201
Query: 178 YGLDKK--ESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLA 235
YGLDKK ++++DLGGGTFDV++L D + EV +T GD LGG+DFDNR+++
Sbjct: 202 YGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFI 261
Query: 236 SEFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLT 295
+EFK + +I + A++RL+ A E AK+ LSS+ + I + + +T
Sbjct: 262 AEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGI----DFYTSIT 317
Query: 296 RAKFESLTEDLMKETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFIN-KD 354
RA+FE L DL + T+ +E ++DA L K++I ++V+VGGSTRIPK+Q+ ++ F N K+
Sbjct: 318 RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 377
Query: 355 LNKSVNPDEVVAVGASIQGGVL 376
LNKS+NPDE VA GA++Q +L
Sbjct: 378 LNKSINPDEAVAYGAAVQAAIL 399
>pdb|1KAZ| 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant
Length = 381
Score = 350 bits (898), Expect = 3e-97
Identities = 180/382 (47%), Positives = 262/382 (68%), Gaps = 12/382 (3%)
Query: 2 GKVIGIDLGTTNSAMAVYEGNEAKIIANKEGKNTTPSIVAFTDKGEILVGESAKRQAVTN 61
G +GIDLGTT S + V++ + +IIAN +G TTPS VAFTD E L+G++AK Q N
Sbjct: 4 GPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMN 62
Query: 62 PEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKVYT----PQEISAK 117
P T++ +R++G F++ + K P+ +V+ G +++ K T P+E+S+
Sbjct: 63 PTNTVFDAERLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSM 122
Query: 118 ILMKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALA 177
+L K+KE AE+YLG++VT AV+TVPAYFNDSQR+ATK+AGTIAGLNVLRIINEPT+AA+A
Sbjct: 123 VLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIA 182
Query: 178 YGLDKK--ESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLA 235
YGLDKK ++++DLGGGTFDV++L D + EV +T GD LGG+DFDNR+++
Sbjct: 183 YGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFI 242
Query: 236 SEFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLT 295
+EFK + +I + A++RL+ A E AK+ LSS+ + I + + +T
Sbjct: 243 AEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGI----DFYTSIT 298
Query: 296 RAKFESLTEDLMKETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFIN-KD 354
RA+FE L DL + T+ +E ++DA L K++I ++V+VGGSTRIPK+Q+ ++ F N K+
Sbjct: 299 RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 358
Query: 355 LNKSVNPDEVVAVGASIQGGVL 376
LNKS+NPDE VA GA++Q +L
Sbjct: 359 LNKSINPDEAVAYGAAVQAAIL 380
>pdb|1HJO|A Chain A, Heat-Shock 70kd Protein 42kd Atpase N-Terminal Domain
Length = 380
Score = 350 bits (897), Expect = 3e-97
Identities = 181/381 (47%), Positives = 258/381 (67%), Gaps = 12/381 (3%)
Query: 5 IGIDLGTTNSAMAVYEGNEAKIIANKEGKNTTPSIVAFTDKGEILVGESAKRQAVTNPEK 64
IGIDLGTT S + V++ + +IIAN +G TTPS VAFTD E L+G++AK Q NP+
Sbjct: 5 IGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVALNPQN 63
Query: 65 TIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEIS----GKVYTPQEISAKILM 120
T++ KR++G F + + K P+++++ +++S K + P+EIS+ +L
Sbjct: 64 TVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYKGETKAFYPEEISSMVLT 123
Query: 121 KLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALAYGL 180
K+KE AE+YLG VT AVITVPAYFNDSQR+ATK+AG IAGLNVLRIINEPT+AA+AYGL
Sbjct: 124 KMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGL 183
Query: 181 DK--KESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLASEF 238
D+ K ++++DLGGGTFDV++L D + EV AT GD LGG+DFDNR+++ EF
Sbjct: 184 DRTGKGERNVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVNHFVEEF 243
Query: 239 KSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLTRAK 298
K + +I + A++RL+ A E AK+ LSS+ + + + + +TRA+
Sbjct: 244 KRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGI----DFYTSITRAR 299
Query: 299 FESLTEDLMKETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFIN-KDLNK 357
FE L DL + T+ +E ++DA L K +I ++V+VGGSTRIPKVQ+ ++ F N +DLNK
Sbjct: 300 FEELCSDLFRSTLEPVEKALRDAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNGRDLNK 359
Query: 358 SVNPDEVVAVGASIQGGVLKG 378
S+NPDE VA GA++Q +L G
Sbjct: 360 SINPDEAVAYGAAVQAAILMG 380
>pdb|1KAX| 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant
Length = 381
Score = 349 bits (896), Expect = 5e-97
Identities = 180/382 (47%), Positives = 261/382 (68%), Gaps = 12/382 (3%)
Query: 2 GKVIGIDLGTTNSAMAVYEGNEAKIIANKEGKNTTPSIVAFTDKGEILVGESAKRQAVTN 61
G +GIDLGTT S + V++ + +IIAN +G TTPS VAFTD E L+G++AK Q N
Sbjct: 4 GPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMN 62
Query: 62 PEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKVYT----PQEISAK 117
P T++ R++G F++ + K P+ +V+ G +++ K T P+E+S+
Sbjct: 63 PTNTVFDAMRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSM 122
Query: 118 ILMKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALA 177
+L K+KE AE+YLG++VT AV+TVPAYFNDSQR+ATK+AGTIAGLNVLRIINEPT+AA+A
Sbjct: 123 VLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIA 182
Query: 178 YGLDKK--ESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLA 235
YGLDKK ++++DLGGGTFDV++L D + EV +T GD LGG+DFDNR+++
Sbjct: 183 YGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFI 242
Query: 236 SEFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLT 295
+EFK + +I + A++RL+ A E AK+ LSS+ + I + + +T
Sbjct: 243 AEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGI----DFYTSIT 298
Query: 296 RAKFESLTEDLMKETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFIN-KD 354
RA+FE L DL + T+ +E ++DA L K++I ++V+VGGSTRIPK+Q+ ++ F N K+
Sbjct: 299 RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 358
Query: 355 LNKSVNPDEVVAVGASIQGGVL 376
LNKS+NPDE VA GA++Q +L
Sbjct: 359 LNKSINPDEAVAYGAAVQAAIL 380
>pdb|1KAY| 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant
Length = 381
Score = 349 bits (896), Expect = 5e-97
Identities = 180/382 (47%), Positives = 261/382 (68%), Gaps = 12/382 (3%)
Query: 2 GKVIGIDLGTTNSAMAVYEGNEAKIIANKEGKNTTPSIVAFTDKGEILVGESAKRQAVTN 61
G +GIDLGTT S + V++ + +IIAN +G TTPS VAFTD E L+G++AK Q N
Sbjct: 4 GPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMN 62
Query: 62 PEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKVYT----PQEISAK 117
P T++ R++G F++ + K P+ +V+ G +++ K T P+E+S+
Sbjct: 63 PTNTVFDAARLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSM 122
Query: 118 ILMKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALA 177
+L K+KE AE+YLG++VT AV+TVPAYFNDSQR+ATK+AGTIAGLNVLRIINEPT+AA+A
Sbjct: 123 VLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIA 182
Query: 178 YGLDKK--ESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLA 235
YGLDKK ++++DLGGGTFDV++L D + EV +T GD LGG+DFDNR+++
Sbjct: 183 YGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFI 242
Query: 236 SEFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLT 295
+EFK + +I + A++RL+ A E AK+ LSS+ + I + + +T
Sbjct: 243 AEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGI----DFYTSIT 298
Query: 296 RAKFESLTEDLMKETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFIN-KD 354
RA+FE L DL + T+ +E ++DA L K++I ++V+VGGSTRIPK+Q+ ++ F N K+
Sbjct: 299 RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 358
Query: 355 LNKSVNPDEVVAVGASIQGGVL 376
LNKS+NPDE VA GA++Q +L
Sbjct: 359 LNKSINPDEAVAYGAAVQAAIL 380
>pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70
Length = 381
Score = 349 bits (895), Expect = 6e-97
Identities = 180/382 (47%), Positives = 261/382 (68%), Gaps = 12/382 (3%)
Query: 2 GKVIGIDLGTTNSAMAVYEGNEAKIIANKEGKNTTPSIVAFTDKGEILVGESAKRQAVTN 61
G +GIDLG T S + V++ + +IIAN +G TTPS VAFTD E L+G++AK Q N
Sbjct: 4 GPAVGIDLGGTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMN 62
Query: 62 PEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKVYT----PQEISAK 117
P T++ KR++G F++ + K P+ +V+ G +++ K T P+E+S+
Sbjct: 63 PTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSM 122
Query: 118 ILMKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALA 177
+L K+KE AE+YLG++VT AV+TVPAYFNDSQR+ATK+AGTIAGLNVLRIINEPT+AA+A
Sbjct: 123 VLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIA 182
Query: 178 YGLDKK--ESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLA 235
YGLDKK ++++DLGGGTFDV++L D + EV +T GD LGG+DFDNR+++
Sbjct: 183 YGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFI 242
Query: 236 SEFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLT 295
+EFK + +I + A++RL+ A E AK+ LSS+ + I + + +T
Sbjct: 243 AEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGI----DFYTSIT 298
Query: 296 RAKFESLTEDLMKETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFIN-KD 354
RA+FE L DL + T+ +E ++DA L K++I ++V+VGGSTRIPK+Q+ ++ F N K+
Sbjct: 299 RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 358
Query: 355 LNKSVNPDEVVAVGASIQGGVL 376
LNKS+NPDE VA GA++Q +L
Sbjct: 359 LNKSINPDEAVAYGAAVQAAIL 380
>pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 348 bits (893), Expect = 1e-96
Identities = 180/382 (47%), Positives = 259/382 (67%), Gaps = 12/382 (3%)
Query: 2 GKVIGIDLGTTNSAMAVYEGNEAKIIANKEGKNTTPSIVAFTDKGEILVGESAKRQAVTN 61
G +GIDLGTT S + V++ + +IIAN +G TTPS VAFTD E L+G++AK Q N
Sbjct: 1 GPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMN 59
Query: 62 PEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKVYT----PQEISAK 117
P T++ KR++G F++ + K P+ +V+ GA +++ K T P+E+S+
Sbjct: 60 PTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGAPKVQVEYKGETKSFYPEEVSSM 119
Query: 118 ILMKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALA 177
+L K+KE AE+YLG +VT AV+TVPAYFNDSQR+ATK+AGTIAGLNVLRIINEPT+AA+A
Sbjct: 120 VLTKMKEIAEAYLGATVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIA 179
Query: 178 YGLDKK--ESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLA 235
YGLDK ++++ LGGGTFDV++L D + EV +T GD LGG+DFDNR+++
Sbjct: 180 YGLDKAVGAERNVLIFSLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFI 239
Query: 236 SEFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLT 295
+EFK +I + A++RL+ A E AK+ LSS+ + I + + +T
Sbjct: 240 AEFKRAHAKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGI----DFYTSIT 295
Query: 296 RAKFESLTEDLMKETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFIN-KD 354
RA+FE L DL + T+ +E ++DA L K++I ++V+VGGSTRIPK+Q+ ++ F N K+
Sbjct: 296 RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 355
Query: 355 LNKSVNPDEVVAVGASIQGGVL 376
LNKS+NPDE VA GA++Q +L
Sbjct: 356 LNKSINPDEAVAYGAAVQAAIL 377
>pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 347 bits (890), Expect = 2e-96
Identities = 180/382 (47%), Positives = 258/382 (67%), Gaps = 12/382 (3%)
Query: 2 GKVIGIDLGTTNSAMAVYEGNEAKIIANKEGKNTTPSIVAFTDKGEILVGESAKRQAVTN 61
G +GIDLGTT S + V++ + +IIAN +G TTPS VAFTD E L+G++AK Q N
Sbjct: 1 GPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMN 59
Query: 62 PEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKVYT----PQEISAK 117
P T++ KR++G F++ + K P+ +V+ GA +++ K T P+E+S+
Sbjct: 60 PTNTVFDAKRLIGRAFDDAVVQSDMKHWPFMVVNDAGAPKVQVEYKGETKSFYPEEVSSM 119
Query: 118 ILMKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALA 177
+L K+KE AE+YLG +VT AV+TVPAYFNDSQR+ATK+AGTIAGLNVLRIINEPT+AA+A
Sbjct: 120 VLTKMKEIAEAYLGATVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIA 179
Query: 178 YGLDKK--ESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLA 235
YGLDK ++++DLGGGTF V++L D + EV +T GD LGG+DFDNR+++
Sbjct: 180 YGLDKAVGAERNVLIFDLGGGTFSVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFI 239
Query: 236 SEFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLT 295
+EFK +I + A++RL A E AK+ LSS+ + I + + +T
Sbjct: 240 AEFKRAHAKDISENKRAVRRLATACERAKRTLSSSTQASIEIDSLYEGI----DFYTSIT 295
Query: 296 RAKFESLTEDLMKETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFIN-KD 354
RA+FE L DL + T+ +E ++DA L K++I ++V+VGGSTRIPK+Q+ ++ F N K+
Sbjct: 296 RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 355
Query: 355 LNKSVNPDEVVAVGASIQGGVL 376
LNKS+NPDE VA GA++Q +L
Sbjct: 356 LNKSINPDEAVAYGAAVQAAIL 377
>pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 347 bits (889), Expect = 3e-96
Identities = 179/382 (46%), Positives = 259/382 (66%), Gaps = 12/382 (3%)
Query: 2 GKVIGIDLGTTNSAMAVYEGNEAKIIANKEGKNTTPSIVAFTDKGEILVGESAKRQAVTN 61
G +GIDLGTT S + V++ + +IIAN +G TTPS VAFTD E L+G++AK Q N
Sbjct: 1 GPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMN 59
Query: 62 PEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKVYT----PQEISAK 117
P T++ KR++G F++ + K P+ +V+ G +++ K T P+E+S+
Sbjct: 60 PTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSM 119
Query: 118 ILMKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALA 177
+L K+KE AE+YLG +VT AV+TVPAYFNDSQR+ATK+AGTIAGLNVLRIIN PT+AA+A
Sbjct: 120 VLTKMKEIAEAYLGATVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINSPTAAAIA 179
Query: 178 YGLDKK--ESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLA 235
YGLDK ++++DLGGGTFDV++L D + EV +T GD LGG+DFDNR+++
Sbjct: 180 YGLDKAVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFI 239
Query: 236 SEFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLT 295
+EFK + +I + A++RL+ A E AK+ LSS+ + I + + +T
Sbjct: 240 AEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGI----DFYTSIT 295
Query: 296 RAKFESLTEDLMKETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFIN-KD 354
RA+FE L DL + T+ +E ++DA L K++I ++V+VGGSTRIPK+Q+ ++ F N K+
Sbjct: 296 RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 355
Query: 355 LNKSVNPDEVVAVGASIQGGVL 376
LNKS+NPDE VA GA++Q +L
Sbjct: 356 LNKSINPDEAVAYGAAVQAAIL 377
>pdb|1DKZ|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 1 Native
Crystals
pdb|1DKY|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 2 Native
Crystals
pdb|1DKY|B Chain B, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 2 Native
Crystals
Length = 219
Score = 244 bits (624), Expect = 2e-65
Identities = 130/214 (60%), Positives = 164/214 (75%), Gaps = 2/214 (0%)
Query: 383 VLLLDVTPLSLGIETLGGVMTKVIDRGTTIPAKKSQVFSTAEDNQPAVSIMVLQGERELA 442
VLLLDVTPLSLGIET+GGVMT +I + TTIP K SQVFSTAEDNQ AVSI VLQGER+ A
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRA 60
Query: 443 RDNKSLGKFDLQGIAPAPRGVPQIEVTFDIDANGILTVSAQDKNTGKSQEIKISGSSGLS 502
DNKSLG+F+L GI PAPRG+PQIEVTFDIDA+GIL VSA+DKN+GK Q+I I SSGL+
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLN 120
Query: 503 DSEIEKMVKDAELHKEEDAKKKEVIEARNHADSLAHQTQKSLDEHKTNLNENDANEIQNA 562
+ EI+KMV+DAE + E D K +E+++ RN D L H T+K ++E L +D I++A
Sbjct: 121 EDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESA 180
Query: 563 INALKDCVKNDNATKAELEDKTKLLAQAAQKLGE 596
+ AL+ +K ++ KA +E K + LAQ +QKL E
Sbjct: 181 LTALETALKGED--KAAIEAKMQELAQVSQKLME 212
>pdb|1DKX|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 1
Selenomethionyl Crystals
Length = 219
Score = 243 bits (619), Expect = 6e-65
Identities = 129/214 (60%), Positives = 163/214 (75%), Gaps = 2/214 (0%)
Query: 383 VLLLDVTPLSLGIETLGGVMTKVIDRGTTIPAKKSQVFSTAEDNQPAVSIMVLQGERELA 442
VLLLDVTPLSLGIET+GGVMT +I + TTIP K SQVFSTAEDNQ AV+I VLQGER+ A
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRA 60
Query: 443 RDNKSLGKFDLQGIAPAPRGVPQIEVTFDIDANGILTVSAQDKNTGKSQEIKISGSSGLS 502
DNKSLG+F+L GI PAPRG+PQIEVTFDIDA+GIL VSA+DKN+GK Q+I I SSGL+
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLN 120
Query: 503 DSEIEKMVKDAELHKEEDAKKKEVIEARNHADSLAHQTQKSLDEHKTNLNENDANEIQNA 562
+ EI+KMV+DAE + E D K E+++ RN D L H T+K ++E L +D I++A
Sbjct: 121 EDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESA 180
Query: 563 INALKDCVKNDNATKAELEDKTKLLAQAAQKLGE 596
+ AL+ +K ++ KA +E K + LAQ +QKL E
Sbjct: 181 LTALETALKGED--KAAIEAKMQELAQVSQKLME 212
>pdb|1BPR| Nmr Structure Of The Substrate Binding Domain Of Dnak, Minimized
Average Structure
pdb|2BPR| Nmr Structure Of The Substrate Binding Domain Of Dnak, 25
Structures
Length = 191
Score = 230 bits (587), Expect = 3e-61
Identities = 118/182 (64%), Positives = 145/182 (78%)
Query: 374 GVLKGDVKDVLLLDVTPLSLGIETLGGVMTKVIDRGTTIPAKKSQVFSTAEDNQPAVSIM 433
G ++G VKDVLLLDVTPLSLGIET+GGVMT +I + TTIP K SQVFSTAEDNQ AV+I
Sbjct: 10 GSIEGRVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIH 69
Query: 434 VLQGERELARDNKSLGKFDLQGIAPAPRGVPQIEVTFDIDANGILTVSAQDKNTGKSQEI 493
VLQGER+ A DNKSLG+F+L GI PAPRG+PQIEVTFDIDA+GIL VSA+DKN+GK Q+I
Sbjct: 70 VLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKI 129
Query: 494 KISGSSGLSDSEIEKMVKDAELHKEEDAKKKEVIEARNHADSLAHQTQKSLDEHKTNLNE 553
I SSGL++ EI+KMV+DAE + E D K +E+++ RN D L H T+K ++E L
Sbjct: 130 TIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPA 189
Query: 554 ND 555
+D
Sbjct: 190 DD 191
>pdb|1CKR|A Chain A, High Resolution Solution Structure Of The Heat Shock
Cognate-70 Kd Substrate Binding Domain Obtained By
Multidimensional Nmr Techniques
pdb|7HSC|A Chain A, High Resolution Solution Structure Of The Heat Shock
Cognate-70 Kd Substrate Binding Domain Obtained By
Multidimensional Nmr Techniques
Length = 159
Score = 188 bits (478), Expect = 1e-48
Identities = 95/154 (61%), Positives = 120/154 (77%), Gaps = 1/154 (0%)
Query: 379 DVKDVLLLDVTPLSLGIETLGGVMTKVIDRGTTIPAKKSQVFSTAEDNQPAVSIMVLQGE 438
+V+D+LLLDVTPLSLGIET GGVMT +I R TTIP K++Q F+T DNQP V I V +GE
Sbjct: 3 NVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGE 62
Query: 439 RELARDNKSLGKFDLQGIAPAPRGVPQIEVTFDIDANGILTVSAQDKNTGKSQEIKISGS 498
R + +DN LGKF+L GI PAPRGVPQIEVTFDIDANGIL VSA DK+TGK +I I+
Sbjct: 63 RAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITND 122
Query: 499 SG-LSDSEIEKMVKDAELHKEEDAKKKEVIEARN 531
G LS +IE+MV++AE +K ED K+++ + ++N
Sbjct: 123 KGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKN 156
>pdb|1DG4|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak In
The Apo Form
Length = 115
Score = 169 bits (429), Expect = 6e-43
Identities = 87/115 (75%), Positives = 99/115 (85%)
Query: 387 DVTPLSLGIETLGGVMTKVIDRGTTIPAKKSQVFSTAEDNQPAVSIMVLQGERELARDNK 446
DVTPLSLGIET+GGVMT +I + TTIP K SQVFSTAEDNQ AV+I VLQGER+ A DNK
Sbjct: 1 DVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNK 60
Query: 447 SLGKFDLQGIAPAPRGVPQIEVTFDIDANGILTVSAQDKNTGKSQEIKISGSSGL 501
SLG+F+L GI PAPRG+PQIEVTFDIDA+GIL VSA+DKN+GK Q+I I SSGL
Sbjct: 61 SLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGL 115
>pdb|1JCF|A Chain A, Mreb From Thermotoga Maritima, Trigonal
pdb|1JCG|A Chain A, Mreb From Thermotoga Maritima, Amppnp
Length = 344
Score = 67.0 bits (162), Expect = 6e-12
Identities = 93/379 (24%), Positives = 156/379 (40%), Gaps = 71/379 (18%)
Query: 3 KVIGIDLGTTNSAMAVYEGNEAKIIANKEGKNTTPSIVAF-TDKGEIL-VGESAKRQAVT 60
K IGIDLGT N+ + + I+ N+ PS++A + GEIL VG AK
Sbjct: 4 KDIGIDLGTANTLVFL---RGKGIVVNE------PSVIAIDSTTGEILKVGLEAKNMIGK 54
Query: 61 NPEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKVYTPQEISAKILM 120
P TI +I+ + R+G A YT ++ +L
Sbjct: 55 TPA-TIKAIRPM-----------------------RDGVIAD------YT---VALVMLR 81
Query: 121 KLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALAYGL 180
A+ + VI VP D +R+A +AG AG + + +I EP +AA+ L
Sbjct: 82 YFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAIGSNL 141
Query: 181 DKKESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLASEFKS 240
+ +E MV D+GGGT +V V+ G + T + GD+ D ++ ++ ++
Sbjct: 142 NVEEPSGNMVVDIGGGTTEVAVISLGS-----IVTWESIRIAGDEMDEAIVQYVRETYRV 196
Query: 241 ETGIEIKNDVMALQRLKEAAENAKKELSSAMETEIN--LPFITADATGPKHLVKKLTRAK 298
G + AE K E+ + ++ N L + L +KLT K
Sbjct: 197 AIG-------------ERTAERVKIEIGNVFPSKENDELETTVSGIDLSTGLPRKLT-LK 242
Query: 299 FESLTEDLMKETISKIESVIKDAGLTKNE-ISEVV-----MVGGSTRIPKVQERVKAFIN 352
+ E L ++ +ESV T E +S+++ + GG + + + ++
Sbjct: 243 GGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETG 302
Query: 353 KDLNKSVNPDEVVAVGASI 371
+ +S P VA GA +
Sbjct: 303 ISVIRSEEPLTAVAKGAGM 321
>pdb|1JCE|A Chain A, Mreb From Thermotoga Maritima
Length = 344
Score = 62.8 bits (151), Expect = 1e-10
Identities = 91/377 (24%), Positives = 152/377 (40%), Gaps = 71/377 (18%)
Query: 3 KVIGIDLGTTNSAMAVYEGNEAKIIANKEGKNTTPSIVAF-TDKGEIL-VGESAKRQAVT 60
K IGIDLGT N+ + + I+ N+ PS++A + GEIL VG AK
Sbjct: 4 KDIGIDLGTANTLVFL---RGKGIVVNE------PSVIAIDSTTGEILKVGLEAKNXIGK 54
Query: 61 NPEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKVYTPQEISAKILM 120
P TI +I+ R+G A YT + + +
Sbjct: 55 TPA-TIKAIRPX-----------------------RDGVIAD------YTVALVXLRYFI 84
Query: 121 KLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALAYGL 180
+ + V VI VP D +R+A +AG AG + + +I EP +AA+ L
Sbjct: 85 NKAKGGXNLFKPRV---VIGVPIGITDVERRAILDAGLEAGASKVFLIEEPXAAAIGSNL 141
Query: 181 DKKESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLASEFKS 240
+ +E V D+GGGT +V V+ G + T + GD+ D ++ ++ ++
Sbjct: 142 NVEEPSGNXVVDIGGGTTEVAVISLGS-----IVTWESIRIAGDEXDEAIVQYVRETYRV 196
Query: 241 ETGIEIKNDVMALQRLKEAAENAKKELSSAMETEIN--LPFITADATGPKHLVKKLTRAK 298
G + AE K E+ + ++ N L + L +KLT K
Sbjct: 197 AIG-------------ERTAERVKIEIGNVFPSKENDELETTVSGIDLSTGLPRKLT-LK 242
Query: 299 FESLTEDLMKETISKIESVIKDAGLTKNE-ISEVV-----MVGGSTRIPKVQERVKAFIN 352
+ E L ++ +ESV T E +S+++ + GG + + + ++
Sbjct: 243 GGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETG 302
Query: 353 KDLNKSVNPDEVVAVGA 369
+ +S P VA GA
Sbjct: 303 ISVIRSEEPLTAVAKGA 319
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 32.3 bits (72), Expect = 0.16
Identities = 30/142 (21%), Positives = 61/142 (42%), Gaps = 4/142 (2%)
Query: 478 LTVSAQDKNTGKSQEIKISGSSGLSDSEIEKMVKDAELHKEEDAKKKEVIEARNHA--DS 535
LT + ++ K+ SE+E +K E ++E K K +E + +
Sbjct: 1016 LTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ 1075
Query: 536 LAHQTQKSLDEHKTNLNENDANEIQNAINALKDCVKNDNATKAELEDKTKLLAQAAQKLG 595
+A + Q + E K L + + E+Q A+ L+D N ++ + ++ + L
Sbjct: 1076 IA-ELQAQIAELKAQLAKKE-EELQAALARLEDETSQKNNALKKIRELESHISDLQEDLE 1133
Query: 596 EAMANKNNAEQPKKKDDDVIDA 617
A +N AE+ K+ + ++A
Sbjct: 1134 SEKAARNKAEKQKRDLSEELEA 1155
>pdb|1JSD|B Chain B, Crystal Structure Of Swine H9 Haemagglutinin
pdb|1JSI|B Chain B, Crystal Structure Of H9 Haemagglutinin Bound To Lstc
Receptor Analog
pdb|1JSH|B Chain B, Crystal Structure Of H9 Haemagglutinin Complexed With Lsta
Receptor Analog
Length = 176
Score = 31.2 bits (69), Expect = 0.36
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 479 TVSAQDKNTGKSQEI--KISGSSGLSDSEIEKMVKDAELHKEEDAKKKEVIEARNHADSL 536
T A DK T K I K++ G+ D E ++ + + + + I N +
Sbjct: 41 TQKAIDKITSKVNNIVDKMNKQYGIIDHEFSEIETRLNMINNKIDDQIQDIWTYNAELLV 100
Query: 537 AHQTQKSLDEHKTNLNENDANEIQNAI--NALKD 568
+ QK+LDEH N+N N N+++ A+ NA++D
Sbjct: 101 LLENQKTLDEHDANVN-NLYNKVKRALGSNAMED 133
>pdb|1E4F|T Chain T, Ftsa (Apo Form) From Thermotoga Maritima
Length = 419
Score = 30.4 bits (67), Expect = 0.61
Identities = 22/90 (24%), Positives = 36/90 (39%), Gaps = 16/90 (17%)
Query: 291 VKKLTRAKFESLTEDLMKETISKIESVIKDAGLTKNEISE------VVMVGGSTRIPKVQ 344
+K T K + ++E +SK + ++ E E VV+ GG +IP++
Sbjct: 286 IKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRIN 345
Query: 345 E----------RVKAFINKDLNKSVNPDEV 364
E R + N D +N DEV
Sbjct: 346 ELATEVFKSPVRTGCYANSDRPSIINADEV 375
>pdb|1TNM| Titin Module M5 (Connectin) (Nmr, Minimized Average Structure)
pdb|1TNN| Titin Module M5 (Connectin) (Nmr, 16 Structures)
Length = 100
Score = 29.6 bits (65), Expect = 1.0
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 11 TTNSAMAVYEGNEAKIIANKEGKNTTPSIVAFTDKGEILVGESAKRQAVTNPEKTIYSIK 70
T +M VYEG A+ + +G+ V + KG++L SA+ Q T K+ + I
Sbjct: 13 TKPRSMTVYEGESARFSCDTDGEPV--PTVTWLRKGQVL-STSARHQVTTTKYKSTFEIS 69
Query: 71 RI 72
+
Sbjct: 70 SV 71
>pdb|1NCT| Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU| Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 29.6 bits (65), Expect = 1.0
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 11 TTNSAMAVYEGNEAKIIANKEGKNTTPSIVAFTDKGEILVGESAKRQAVTNPEKTIYSIK 70
T +M VYEG A+ + +G+ V + KG++L SA+ Q T K+ + I
Sbjct: 19 TKPRSMTVYEGESARFSCDTDGEPV--PTVTWLRKGQVL-STSARHQVTTTKYKSTFEIS 75
Query: 71 RI 72
+
Sbjct: 76 SV 77
>pdb|1E4G|T Chain T, Ftsa (Atp-Bound Form) From Thermotoga Maritima
Length = 419
Score = 29.6 bits (65), Expect = 1.0
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 16/90 (17%)
Query: 291 VKKLTRAKFESLTEDLMKETISKIESVIKDAGLTKNEISE------VVMVGGSTRIPKVQ 344
+K T K + ++E SK + ++ E E VV+ GG +IP++
Sbjct: 286 IKTTTAKKLSVIIHARLREIXSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRIN 345
Query: 345 E----------RVKAFINKDLNKSVNPDEV 364
E R + N D +N DEV
Sbjct: 346 ELATEVFKSPVRTGCYANSDRPSIINADEV 375
>pdb|1IRU|D Chain D, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|R Chain R, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 248
Score = 28.9 bits (63), Expect = 1.8
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 489 KSQEIKISGSSGLSDSEIEKMVKDAELHKEEDAKKKE 525
+ Q +KI L+ EIEK V + E KEE+ KKK+
Sbjct: 213 RDQSLKI-----LNPEEIEKYVAEIEKEKEENEKKKQ 244
>pdb|1QPO|A Chain A, Quinolinate Phosphoribosyl Transferase (Qaprtase) Apo-
Enzyme From Mycobacterium Tuberculosis
pdb|1QPO|B Chain B, Quinolinate Phosphoribosyl Transferase (Qaprtase) Apo-
Enzyme From Mycobacterium Tuberculosis
pdb|1QPO|C Chain C, Quinolinate Phosphoribosyl Transferase (Qaprtase) Apo-
Enzyme From Mycobacterium Tuberculosis
pdb|1QPO|D Chain D, Quinolinate Phosphoribosyl Transferase (Qaprtase) Apo-
Enzyme From Mycobacterium Tuberculosis
pdb|1QPO|E Chain E, Quinolinate Phosphoribosyl Transferase (Qaprtase) Apo-
Enzyme From Mycobacterium Tuberculosis
pdb|1QPO|F Chain F, Quinolinate Phosphoribosyl Transferase (Qaprtase) Apo-
Enzyme From Mycobacterium Tuberculosis
pdb|1QPR|A Chain A, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPR|B Chain B, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPR|C Chain C, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPR|D Chain D, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPR|E Chain E, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPR|F Chain F, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPQ|A Chain A, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPQ|B Chain B, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPQ|C Chain C, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPQ|D Chain D, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPQ|E Chain E, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPQ|F Chain F, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPN|A Chain A, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPN|B Chain B, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPN|C Chain C, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPN|D Chain D, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPN|E Chain E, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPN|F Chain F, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
Length = 284
Score = 28.5 bits (62), Expect = 2.3
Identities = 19/47 (40%), Positives = 26/47 (54%), Gaps = 2/47 (4%)
Query: 125 DAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNV-LRIINE 170
D + G VT + TVPA + T+EAG +AGL+V L +NE
Sbjct: 19 DEDLRYGPDVT-TLATVPASATTTASLVTREAGVVAGLDVALLTLNE 64
>pdb|1FFK|W Chain W, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
Length = 73
Score = 28.1 bits (61), Expect = 3.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 98 GACAIEISGKVYTPQEISAKILMK 121
G C +I+G YTP+ ++ K +MK
Sbjct: 49 GHCGYKIAGGAYTPETVAGKAVMK 72
>pdb|1L1N|A Chain A, Poliovirus 3c Proteinase
pdb|1L1N|B Chain B, Poliovirus 3c Proteinase
Length = 183
Score = 28.1 bits (61), Expect = 3.0
Identities = 23/77 (29%), Positives = 37/77 (47%), Gaps = 10/77 (12%)
Query: 38 SIVAFTDKGEILVGESAKRQAVTNPEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRN 97
SIV + EIL ++ + QA TN E TI ++KR +K ++ +P +I + N
Sbjct: 46 SIVIDGKEVEILDAKALEDQAGTNLEITIITLKR-------NEKFRDIRPHIPTQITETN 98
Query: 98 GACAIEISGK---VYTP 111
I + K +Y P
Sbjct: 99 DGVLIVNTSKYPNMYVP 115
>pdb|1DER|A Chain A, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|B Chain B, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|C Chain C, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|D Chain D, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|E Chain E, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|F Chain F, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|G Chain G, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|H Chain H, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|I Chain I, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|J Chain J, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|K Chain K, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|L Chain L, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|M Chain M, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|N Chain N, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
Length = 547
Score = 27.7 bits (60), Expect = 3.9
Identities = 35/173 (20%), Positives = 70/173 (40%), Gaps = 12/173 (6%)
Query: 237 EFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLTR 296
+F ++ G+++ V L + K + ++ P IT D ++
Sbjct: 6 KFGNDAGVKMLRGVNVLADAVKVTLGPKGR-NVVLDKSFGAPTITKDGVSVAREIE--LE 62
Query: 297 AKFESLTEDLMKETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFIN-KDL 355
KFE++ ++KE SK D T +++ ++ G + V A +N DL
Sbjct: 63 DKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEG-------LKAVAAGMNPMDL 115
Query: 356 NKSVNPDEVVAVGASIQGGVLKGDVKDVLLLDVTPLSLGIETLGGVMTKVIDR 408
+ ++ VAV V D K + + T + ET+G ++ + +D+
Sbjct: 116 KRGIDKAVTVAVEELKALSVPCSDSKAIAQVG-TISANSDETVGKLIAEAMDK 167
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|B Chain B, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|C Chain C, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|D Chain D, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|E Chain E, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|F Chain F, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|G Chain G, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|H Chain H, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|I Chain I, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|J Chain J, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|K Chain K, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|L Chain L, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|M Chain M, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|N Chain N, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR6|A Chain A, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|B Chain B, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|C Chain C, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|D Chain D, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|E Chain E, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|F Chain F, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|G Chain G, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|H Chain H, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|I Chain I, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|J Chain J, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|K Chain K, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|L Chain L, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|M Chain M, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|N Chain N, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
Length = 547
Score = 27.7 bits (60), Expect = 3.9
Identities = 35/173 (20%), Positives = 70/173 (40%), Gaps = 12/173 (6%)
Query: 237 EFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLTR 296
+F ++ G+++ V L + K + ++ P IT D ++
Sbjct: 6 KFGNDAGVKMLRGVNVLADAVKVTLGPKGR-NVVLDKSFGAPTITKDGVSVAREIE--LE 62
Query: 297 AKFESLTEDLMKETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFIN-KDL 355
KFE++ ++KE SK D T +++ ++ G + V A +N DL
Sbjct: 63 DKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEG-------LKAVAAGMNPMDL 115
Query: 356 NKSVNPDEVVAVGASIQGGVLKGDVKDVLLLDVTPLSLGIETLGGVMTKVIDR 408
+ ++ VAV V D K + + T + ET+G ++ + +D+
Sbjct: 116 KRGIDKAVTVAVEELKALSVPCSDSKAIAQVG-TISANSDETVGKLIAEAMDK 167
>pdb|1GRL| Mol_id: 1; Molecule: Groel (Hsp60 Class); Chain: Null; Engineered:
Yes; Mutation: R13g, A126v
Length = 548
Score = 27.7 bits (60), Expect = 3.9
Identities = 35/173 (20%), Positives = 70/173 (40%), Gaps = 12/173 (6%)
Query: 237 EFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLTR 296
+F ++ G+++ V L + K + ++ P IT D ++
Sbjct: 7 KFGNDAGVKMLRGVNVLADAVKVTLGPKGR-NVVLDKSFGAPTITKDGVSVAREIE--LE 63
Query: 297 AKFESLTEDLMKETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFIN-KDL 355
KFE++ ++KE SK D T +++ ++ G + V A +N DL
Sbjct: 64 DKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEG-------LKAVAAGMNPMDL 116
Query: 356 NKSVNPDEVVAVGASIQGGVLKGDVKDVLLLDVTPLSLGIETLGGVMTKVIDR 408
+ ++ VAV V D K + + T + ET+G ++ + +D+
Sbjct: 117 KRGIDKAVTVAVEELKALSVPCSDSKAIAQVG-TISANSDETVGKLIAEAMDK 168
>pdb|1OEL|A Chain A, Mol_id: 1; Molecule: Groel (Hsp60 Class); Chain: A, B, C,
D, E, F, G; Engineered: Yes; Mutation: R13g, A126v
pdb|1OEL|B Chain B, Mol_id: 1; Molecule: Groel (Hsp60 Class); Chain: A, B, C,
D, E, F, G; Engineered: Yes; Mutation: R13g, A126v
pdb|1OEL|C Chain C, Mol_id: 1; Molecule: Groel (Hsp60 Class); Chain: A, B, C,
D, E, F, G; Engineered: Yes; Mutation: R13g, A126v
pdb|1OEL|D Chain D, Mol_id: 1; Molecule: Groel (Hsp60 Class); Chain: A, B, C,
D, E, F, G; Engineered: Yes; Mutation: R13g, A126v
pdb|1OEL|E Chain E, Mol_id: 1; Molecule: Groel (Hsp60 Class); Chain: A, B, C,
D, E, F, G; Engineered: Yes; Mutation: R13g, A126v
pdb|1OEL|F Chain F, Mol_id: 1; Molecule: Groel (Hsp60 Class); Chain: A, B, C,
D, E, F, G; Engineered: Yes; Mutation: R13g, A126v
pdb|1OEL|G Chain G, Mol_id: 1; Molecule: Groel (Hsp60 Class); Chain: A, B, C,
D, E, F, G; Engineered: Yes; Mutation: R13g, A126v
Length = 547
Score = 27.7 bits (60), Expect = 3.9
Identities = 35/173 (20%), Positives = 70/173 (40%), Gaps = 12/173 (6%)
Query: 237 EFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLTR 296
+F ++ G+++ V L + K + ++ P IT D ++
Sbjct: 6 KFGNDAGVKMLRGVNVLADAVKVTLGPKGR-NVVLDKSFGAPTITKDGVSVAREIE--LE 62
Query: 297 AKFESLTEDLMKETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFIN-KDL 355
KFE++ ++KE SK D T +++ ++ G + V A +N DL
Sbjct: 63 DKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEG-------LKAVAAGMNPMDL 115
Query: 356 NKSVNPDEVVAVGASIQGGVLKGDVKDVLLLDVTPLSLGIETLGGVMTKVIDR 408
+ ++ VAV V D K + + T + ET+G ++ + +D+
Sbjct: 116 KRGIDKAVTVAVEELKALSVPCSDSKAIAQVG-TISANSDETVGKLIAEAMDK 167
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|2BCC|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3BCC|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
Length = 446
Score = 27.3 bits (59), Expect = 5.2
Identities = 31/150 (20%), Positives = 65/150 (42%), Gaps = 17/150 (11%)
Query: 457 APAPRGVPQIEVTFDIDANGILTVSAQDKNTGKSQEIKISGSSGLSDSE-------IEKM 509
A A + VP+ +V+ +D NG+ S Q + + I S + +E +
Sbjct: 5 AQALQSVPETQVS-QLD-NGVRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFLEHL 62
Query: 510 VKDAELHKEEDAKKKEVIEARNHADSL-AHQTQKSLDEHKTNLNENDANEIQNAINALKD 568
++ ++A +KEV +S+ AH S EH + + ++ A+ L D
Sbjct: 63 AFKGTKNRPQNALEKEV-------ESMGAHLNAYSSREHTAYYIKALSKDVPKAVELLAD 115
Query: 569 CVKNDNATKAELEDKTKLLAQAAQKLGEAM 598
V+N + +++E + ++ + Q+ +M
Sbjct: 116 IVQNCSLEDSQIEKERDVIVRELQENDTSM 145
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 446
Score = 26.9 bits (58), Expect = 6.7
Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 17/150 (11%)
Query: 457 APAPRGVPQIEVTFDIDANGILTVSAQDKNTGKSQEIKISGSSGLSDSE-------IEKM 509
A A + VP+ +V+ +D NG+ S Q + + I S + +E +
Sbjct: 5 AQALQSVPETQVS-QLD-NGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHL 62
Query: 510 VKDAELHKEEDAKKKEVIEARNHADSL-AHQTQKSLDEHKTNLNENDANEIQNAINALKD 568
++ +A +KEV +S+ AH S EH + + ++ A+ L D
Sbjct: 63 AFKGTKNRPGNALEKEV-------ESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLAD 115
Query: 569 CVKNDNATKAELEDKTKLLAQAAQKLGEAM 598
V+N + +++E + ++ Q Q+ +M
Sbjct: 116 IVQNCSLEDSQIEKERDVILQELQENDTSM 145
>pdb|1JFI|B Chain B, Crystal Structure Of The Nc2-Tbp-Dna Ternary Complex
Length = 179
Score = 26.9 bits (58), Expect = 6.7
Identities = 18/79 (22%), Positives = 35/79 (43%), Gaps = 8/79 (10%)
Query: 306 LMKETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFINKDLNKSVNPDEVV 365
++KET+ + N+ E+V+ + I + NK K+++P+ V+
Sbjct: 24 MIKETLPNVR--------VANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVI 75
Query: 366 AVGASIQGGVLKGDVKDVL 384
S+ G +VK+VL
Sbjct: 76 QALESLGFGSYISEVKEVL 94
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|M Chain M, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|A Chain A, Cytochrome Bc1 Complex From Bovine
Length = 446
Score = 26.9 bits (58), Expect = 6.7
Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 17/150 (11%)
Query: 457 APAPRGVPQIEVTFDIDANGILTVSAQDKNTGKSQEIKISGSSGLSDSE-------IEKM 509
A A + VP+ +V+ +D NG+ S Q + + I S + +E +
Sbjct: 5 AQALQSVPETQVS-QLD-NGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHL 62
Query: 510 VKDAELHKEEDAKKKEVIEARNHADSL-AHQTQKSLDEHKTNLNENDANEIQNAINALKD 568
++ +A +KEV +S+ AH S EH + + ++ A+ L D
Sbjct: 63 AFKGTKNRPGNALEKEV-------ESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLAD 115
Query: 569 CVKNDNATKAELEDKTKLLAQAAQKLGEAM 598
V+N + +++E + ++ Q Q+ +M
Sbjct: 116 IVQNCSLEDSQIEKERDVILQELQENDTSM 145
>pdb|1EVQ|A Chain A, The Crystal Structure Of The Thermophilic Carboxylesterase
Est2 From Alicyclobacillus Acidocaldarius
Length = 310
Score = 26.9 bits (58), Expect = 6.7
Identities = 28/72 (38%), Positives = 34/72 (46%), Gaps = 9/72 (12%)
Query: 189 MVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLASEFKSETGIEIKN 248
+VY GGG + V LET D V VLA G A + D+ LA E K +E
Sbjct: 77 LVYYHGGG-WVVGDLETHDPVCRVLAKDGRAVVFSVDYR------LAPEHKFPAAVEDAY 129
Query: 249 DVMALQRLKEAA 260
D ALQ + E A
Sbjct: 130 D--ALQWIAERA 139
>pdb|1RHI|4 Chain 4, Human Rhinovirus 3 Coat Protein
Length = 68
Score = 26.9 bits (58), Expect = 6.7
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 540 TQKSLDEHKTNLNENDANEIQNAINALKDCVKNDNATKAELEDKTK 585
TQKS N+ N +N+ IN KD + +A ++ D +K
Sbjct: 6 TQKSGSHENQNILTNGSNQTYTVINYYKDAASSSSAGQSFSMDPSK 51
>pdb|1LKV|X Chain X, Crystal Structure Of The Middle And C-Terminal Domains Of
The Flagellar Rotor Protein Flig
Length = 232
Score = 26.6 bits (57), Expect = 8.8
Identities = 17/81 (20%), Positives = 35/81 (42%)
Query: 109 YTPQEISAKILMKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRII 168
Y ++A+IL L E+ ++ + + + T P + +R K+ ++
Sbjct: 34 YLDPPVAAQILGALPEELQTEVLKRIALLERTSPEVVKEIERNLEKKISGFVSRTFSKVG 93
Query: 169 NEPTSAALAYGLDKKESEKIM 189
T+A + LD+ +KIM
Sbjct: 94 GIDTAAEIMNNLDRTTEKKIM 114
>pdb|1FJX|A Chain A, Structure Of Ternary Complex Of Hhai Methyltransferase
Mutant (T250g) In Complex With Dna And Adohcy
Length = 327
Score = 26.6 bits (57), Expect = 8.8
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 491 QEIKISGSS-GLSDSEIEKMVKDAELHKEEDAKKKEVIEARNHADSLAHQTQKSLDEHKT 549
Q ISG G DS A + +E KK +V+ N + +H +L+ K
Sbjct: 82 QAFSISGKQKGFEDSRGTLFFDIARIVRE---KKPKVVFMENVKNFASHDNGNTLEVVKN 138
Query: 550 NLNENDANEIQNAINAL 566
+NE D + +NAL
Sbjct: 139 TMNELDYSFHAKVLNAL 155
>pdb|1JBA|A Chain A, Unmyristoylated Gcap-2 With Three Calcium Ions Bound
Length = 204
Score = 26.6 bits (57), Expect = 8.8
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 25/104 (24%)
Query: 52 ESAKRQAVTNPEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVD--RNG----------- 98
E+ R TN + TI ++ + L E + + +KI D RNG
Sbjct: 62 EAMFRAFDTNGDNTIDFLEYVAALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIV 121
Query: 99 --------ACAIEIS----GKVYTPQEISAKILMKLKEDAESYL 130
AC++E+ GK+ TP+E+ +I + + E+ + L
Sbjct: 122 ESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQL 165
>pdb|1M0E|A Chain A, Zebularine: A Novel Dna Methylation Inhibitor That Forms A
Covalent Complex With Dna Methyltransferase
pdb|6MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
And Dna Containing 4'-Thio-2'deoxycytidine At The Target
pdb|9MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
pdb|1HMY| Hhai Dna (Cytosine-C5-)-Methyltransferase (E.C.2.1.1.37) Complex
With S-Adenosyl-L-Methionine
pdb|10MH|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
And Hemimethylated Dna Containing
5,6-Dihydro-5-Azacytosine At The Target
pdb|2HMY|B Chain B, Binary Complex Of Hhai Methyltransferase With Adomet
Formed In The Presence Of A Short Nonpsecific Dna
Oligonucleotide
pdb|4MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Native
Dna And Adohcy
pdb|3MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
Unmodified Dna And Adohcy
pdb|5MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
Hemimethylated Dna And Adohcy
pdb|8MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
pdb|1MHT|A Chain A, Covalent Ternary Structure Of Hhai Methyltransferase, Dna
And S-Adenosyl-L-Homocysteine
pdb|7MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
Length = 327
Score = 26.6 bits (57), Expect = 8.8
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 491 QEIKISGSS-GLSDSEIEKMVKDAELHKEEDAKKKEVIEARNHADSLAHQTQKSLDEHKT 549
Q ISG G DS A + +E KK +V+ N + +H +L+ K
Sbjct: 82 QAFSISGKQKGFEDSRGTLFFDIARIVRE---KKPKVVFMENVKNFASHDNGNTLEVVKN 138
Query: 550 NLNENDANEIQNAINAL 566
+NE D + +NAL
Sbjct: 139 TMNELDYSFHAKVLNAL 155
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.309 0.129 0.338
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,329,941
Number of Sequences: 13198
Number of extensions: 139629
Number of successful extensions: 537
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 376
Number of HSP's gapped (non-prelim): 60
length of query: 620
length of database: 2,899,336
effective HSP length: 94
effective length of query: 526
effective length of database: 1,658,724
effective search space: 872488824
effective search space used: 872488824
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.6 bits)