BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645697|ref|NP_207874.1| hypothetical protein
[Helicobacter pylori 26695]
(479 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|2PRN| Rhodopseudomonas Blastica Porin, Triple Mutant ... 30 0.78
pdb|6PRN| E1m, K50a, R52a Mutant Of Rh. Blastica Porin 29 1.3
pdb|5PRN| E1m, Y96w, S119w Mutant Of Rh. Blastica Porin 28 2.3
pdb|8PRN| E1m, K50a, R52a, D97a, E99a Mutant Of Rh. Blast... 28 2.3
pdb|1FNY|A Chain A, Legume Lectin Of The Bark Of Robinia Ps... 27 5.0
pdb|1PRN| Porin 27 5.0
pdb|3PRN| E1m, A104w Mutant Of Rh. Blastica Porin 27 5.0
pdb|1RPJ|A Chain A, Crystal Structure Of D-Allose Binding P... 27 5.0
pdb|1PNF| Pngase F Complex With Di-N-Acetylchitobiose >gi... 27 6.6
pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpas... 27 6.6
pdb|1PGS| Peptide-N(4)-(N-Acetyl-Beta-D-Glucosaminyl) Asp... 27 6.6
pdb|1BH3| E1m, A116k Mutant Of Rh. Blastica Porin 27 6.6
pdb|7PRN| E1m, D97a, E99a Mutant Of Rh. Blastica Porin 26 8.6
pdb|1DUJ|A Chain A, Solution Structure Of The Spindle Assem... 26 8.6
pdb|1KLQ|A Chain A, The Mad2 Spindle Checkpoint Protein Und... 26 8.6
pdb|1GO4|A Chain A, Crystal Structure Of Mad1-Mad2 Reveals ... 26 8.6
>pdb|2PRN| Rhodopseudomonas Blastica Porin, Triple Mutant E1m, E99w, A116w
Length = 289
Score = 29.6 bits (65), Expect = 0.78
Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 13/98 (13%)
Query: 342 FGGAFYKVWKNANAYIGTTGNPLGIDFWTN------SVYDIGQALSHV-VTADAVSGWVF 394
FG W + +A+ GT GN FWT+ SV ++ A V +T D+ G+
Sbjct: 47 FGAKLRMQWDDGDAFAGTAGN--AAQFWTSYNGVTVSVGNVDTAFDSVALTYDSWMGYEA 104
Query: 395 G--GGVHKKWLWGTLWRWTSGTLANEASAAVNVGYKIS 430
G + W SG L N AV Y IS
Sbjct: 105 SSFGDAQSSFFWYNSKYDASGALDNYNGIAVT--YSIS 140
>pdb|6PRN| E1m, K50a, R52a Mutant Of Rh. Blastica Porin
Length = 289
Score = 28.9 bits (63), Expect = 1.3
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 15/99 (15%)
Query: 342 FGGAFYKVWKNANAYIGTTGNPLGIDFWTN------SVYDIGQALSHV-VTADAVSGW-- 392
FG A W + +A+ GT GN FWT+ SV ++ A V +T D+ G+
Sbjct: 47 FGAALAMQWDDGDAFAGTAGN--AAQFWTSYNGVTVSVGNVDTAFDSVALTYDSEMGYEA 104
Query: 393 -VFGGGVHKKWLWGTLWRWTSGTLANEASAAVNVGYKIS 430
FG + + + + SG L N AV Y IS
Sbjct: 105 SSFGDAQSSFFAYNSKYD-ASGALDNYNGIAVT--YSIS 140
>pdb|5PRN| E1m, Y96w, S119w Mutant Of Rh. Blastica Porin
Length = 289
Score = 28.1 bits (61), Expect = 2.3
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 13/98 (13%)
Query: 342 FGGAFYKVWKNANAYIGTTGNPLGIDFWTN------SVYDIGQALSHV-VTADAVSGWVF 394
FG W + +A+ GT GN FWT+ SV ++ A V +T D+ G+
Sbjct: 47 FGAKLRMQWDDGDAFAGTAGN--AAQFWTSYNGVTVSVGNVDTAFDSVALTWDSEMGYEA 104
Query: 395 GG-GVHKKWLWGTLWRW-TSGTLANEASAAVNVGYKIS 430
G + + W++ SG L N AV Y IS
Sbjct: 105 SSFGDAQSSFFAYNWKYDASGALDNYNGIAVT--YSIS 140
>pdb|8PRN| E1m, K50a, R52a, D97a, E99a Mutant Of Rh. Blastica Porin
Length = 289
Score = 28.1 bits (61), Expect = 2.3
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 342 FGGAFYKVWKNANAYIGTTGNPLGIDFWTN 371
FG A W + +A+ GT GN FWT+
Sbjct: 47 FGAALAMQWDDGDAFAGTAGN--AAQFWTS 74
>pdb|1FNY|A Chain A, Legume Lectin Of The Bark Of Robinia Pseudoacacia.
pdb|1FNZ|A Chain A, A Bark Lectin From Robinia Pseudoacacia In Complex With N-
Acetylgalactosamine
Length = 237
Score = 26.9 bits (58), Expect = 5.0
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 6/31 (19%)
Query: 408 WRWTSGTLANEASAAVNVGYKIS-KSLTASV 437
W WT+G +AN V + Y+ S KSLTAS+
Sbjct: 156 WNWTNGEVAN-----VFISYEASTKSLTASL 181
>pdb|1PRN| Porin
Length = 289
Score = 26.9 bits (58), Expect = 5.0
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 15/99 (15%)
Query: 342 FGGAFYKVWKNANAYIGTTGNPLGIDFWTN------SVYDIGQALSHV-VTADAVSGW-- 392
FG W + +A+ GT GN FWT+ SV ++ A V +T D+ G+
Sbjct: 47 FGAKLRMQWDDGDAFAGTAGN--AAQFWTSYNGVTVSVGNVDTAFDSVALTYDSEMGYEA 104
Query: 393 -VFGGGVHKKWLWGTLWRWTSGTLANEASAAVNVGYKIS 430
FG + + + + SG L N AV Y IS
Sbjct: 105 SSFGDAQSSFFAYNSKYD-ASGALDNYNGIAVT--YSIS 140
>pdb|3PRN| E1m, A104w Mutant Of Rh. Blastica Porin
Length = 289
Score = 26.9 bits (58), Expect = 5.0
Identities = 29/98 (29%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
Query: 342 FGGAFYKVWKNANAYIGTTGNPLGIDFWTN------SVYDIGQALSHV-VTADAVSG--W 392
FG W + +A+ GT GN FWT+ SV ++ A V +T D+ G W
Sbjct: 47 FGAKLRMQWDDGDAFAGTAGN--AAQFWTSYNGVTVSVGNVDTAFDSVALTYDSEMGYEW 104
Query: 393 VFGGGVHKKWLWGTLWRWTSGTLANEASAAVNVGYKIS 430
G + SG L N AV Y IS
Sbjct: 105 SSFGDAQSSFFAYNSKYDASGALDNYNGIAVT--YSIS 140
>pdb|1RPJ|A Chain A, Crystal Structure Of D-Allose Binding Protein From
Escherichia Coli
Length = 288
Score = 26.9 bits (58), Expect = 5.0
Identities = 16/56 (28%), Positives = 26/56 (45%)
Query: 261 GVSVSPFFQFSPGTYYSPGVVVGYDSNPNFNGVGFRSETKAYILLPVHDPLRRDTY 316
GVSV F S G + S + SN N+ G+ F + +++PV ++ Y
Sbjct: 31 GVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIY 86
>pdb|1PNF| Pngase F Complex With Di-N-Acetylchitobiose
pdb|1PNG| Peptide-N(4)-(N-Acetyl-Beta-D-Glucosaminyl) Asparagine Amidase F
(Pngase F) (E.C.3.5.1.52)
Length = 314
Score = 26.6 bits (57), Expect = 6.6
Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 22/107 (20%)
Query: 189 PYMSGYTQGFEISAKVKDKNEGIHKLWWFSSWGRAFAY-------GEWIYDFYSPRTVVK 241
PY +T G + + ++ E + S WG A Y EW F + +
Sbjct: 160 PYGKAHTLGLKKNIQLPTNTEKAYLRTTISGWGHAKPYDAGSRGCAEWC--FRTHTIAIN 217
Query: 242 NGRTLNYGIHLVNYTYERKGVSVSPFFQFSPGTY------YSPGVVV 282
N T + + + G S +P SPG + + PG+ V
Sbjct: 218 NANTFQHQLGAL-------GCSANPINNQSPGNWAPDRAGWCPGMAV 257
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 26.6 bits (57), Expect = 6.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 304 LLPVHDPLRRDTYRYAIKAGTAGQSL 329
++P DP R DTY+ +A T G S+
Sbjct: 529 IMPCMDPPRHDTYKTVCEAKTLGLSI 554
>pdb|1PGS| Peptide-N(4)-(N-Acetyl-Beta-D-Glucosaminyl) Asparagine Amidase
(N-Glycosidase F) (Png-Ase F) (E.C.3.5.1.52)
Length = 314
Score = 26.6 bits (57), Expect = 6.6
Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 22/107 (20%)
Query: 189 PYMSGYTQGFEISAKVKDKNEGIHKLWWFSSWGRAFAY-------GEWIYDFYSPRTVVK 241
PY +T G + + ++ E + S WG A Y EW F + +
Sbjct: 160 PYGKAHTLGLKKNIQLPTNTEKAYLRTTISGWGHAKPYDAGSRGCAEWC--FRTHTIAIN 217
Query: 242 NGRTLNYGIHLVNYTYERKGVSVSPFFQFSPGTY------YSPGVVV 282
N T + + + G S +P SPG + + PG+ V
Sbjct: 218 NANTFQHQLGAL-------GCSANPINNQSPGNWTPDRAGWCPGMAV 257
>pdb|1BH3| E1m, A116k Mutant Of Rh. Blastica Porin
Length = 289
Score = 26.6 bits (57), Expect = 6.6
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Query: 342 FGGAFYKVWKNANAYIGTTGNPLGIDFWTN------SVYDIGQALSHV-VTADAVSGW 392
FG W + +A+ GT GN FWT+ SV ++ A V +T D+ G+
Sbjct: 47 FGAKLRMQWDDGDAFAGTAGN--AAQFWTSYNGVTVSVGNVDTAFDSVALTYDSEMGY 102
>pdb|7PRN| E1m, D97a, E99a Mutant Of Rh. Blastica Porin
Length = 289
Score = 26.2 bits (56), Expect = 8.6
Identities = 11/30 (36%), Positives = 15/30 (49%), Gaps = 2/30 (6%)
Query: 342 FGGAFYKVWKNANAYIGTTGNPLGIDFWTN 371
FG W + +A+ GT GN FWT+
Sbjct: 47 FGAKLRMQWDDGDAFAGTAGN--AAQFWTS 74
>pdb|1DUJ|A Chain A, Solution Structure Of The Spindle Assembly Checkpoint
Protein Human Mad2
Length = 187
Score = 26.2 bits (56), Expect = 8.6
Identities = 15/29 (51%), Positives = 17/29 (57%), Gaps = 3/29 (10%)
Query: 32 EVSAESFSKVGFNKKKIDIARGIYPTETF 60
E+ AE FS F I RGIYP+ETF
Sbjct: 10 EIVAEFFS---FGINSILYQRGIYPSETF 35
>pdb|1KLQ|A Chain A, The Mad2 Spindle Checkpoint Protein Undergoes Similar
Major Conformational Changes Upon Binding To Either
Mad1 Or Cdc20
Length = 197
Score = 26.2 bits (56), Expect = 8.6
Identities = 15/29 (51%), Positives = 17/29 (57%), Gaps = 3/29 (10%)
Query: 32 EVSAESFSKVGFNKKKIDIARGIYPTETF 60
E+ AE FS F I RGIYP+ETF
Sbjct: 10 EIVAEFFS---FGINSILYQRGIYPSETF 35
>pdb|1GO4|A Chain A, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20.
pdb|1GO4|B Chain B, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20.
pdb|1GO4|C Chain C, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20.
pdb|1GO4|D Chain D, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20
Length = 205
Score = 26.2 bits (56), Expect = 8.6
Identities = 15/29 (51%), Positives = 17/29 (57%), Gaps = 3/29 (10%)
Query: 32 EVSAESFSKVGFNKKKIDIARGIYPTETF 60
E+ AE FS F I RGIYP+ETF
Sbjct: 18 EIVAEFFS---FGINSILYQRGIYPSETF 43
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.138 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,206,399
Number of Sequences: 13198
Number of extensions: 152077
Number of successful extensions: 236
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 234
Number of HSP's gapped (non-prelim): 16
length of query: 479
length of database: 2,899,336
effective HSP length: 92
effective length of query: 387
effective length of database: 1,685,120
effective search space: 652141440
effective search space used: 652141440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)