BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645698|ref|NP_207875.1| aspartate transcarbamoylase
(pyrB) [Helicobacter pylori 26695]
(307 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|2AT2|A Chain A, Aspartate Transcarbamoylase (E.C.2.1.3.... 200 2e-52
pdb|1D09|A Chain A, Aspartate Transcarbamoylase Complexed W... 129 5e-31
pdb|1RAA|A Chain A, Aspartate Transcarbamoylase (E.C.2.1.3.... 127 1e-30
pdb|8ATC|A Chain A, Complex Of N-Phosphonacetyl-L-Aspartate... 127 1e-30
pdb|1EKX|A Chain A, The Isolated, Unregulated Catalytic Tri... 127 1e-30
pdb|9ATC|A Chain A, Atcase Y165f Mutant 127 2e-30
pdb|1F1B|A Chain A, Crystal Structure Of E. Coli Aspartate ... 126 4e-30
pdb|1ACM|A Chain A, Aspartate Carbamoyltransferase (Asparta... 125 6e-30
pdb|1I5O|A Chain A, Crystal Structure Of Mutant R105a Of E.... 125 6e-30
pdb|2ATC|A Chain A, Aspartate Carbamoyltransferase (Asparta... 111 1e-25
pdb|1A1S| Ornithine Carbamoyltransferase From Pyrococcus ... 94 1e-20
pdb|2OTC|A Chain A, Ornithine Transcarbamoylase Complexed W... 79 7e-16
pdb|1DUV|H Chain H, Crystal Structure Of E. Coli Ornithine ... 79 9e-16
pdb|1DXH|A Chain A, Catabolic Ornithine Carbamoyltransferas... 76 4e-15
pdb|1ORT|A Chain A, Ornithine Transcarbamoylase From Pseudo... 76 6e-15
pdb|1FVO|A Chain A, Crystal Structure Of Human Ornithine Tr... 65 1e-11
pdb|1JS1|X Chain X, Crystal Structure Of A New Transcarbamy... 31 0.16
pdb|1I2O|A Chain A, Crystal Structure Of Escherichia Coli T... 29 0.77
pdb|1I2Q|A Chain A, Crystal Structure Of Escherichia Coli T... 28 1.0
pdb|1I2P|A Chain A, Crystal Structure Of Escherichia Coli T... 28 1.0
pdb|1UCW|A Chain A, Complex Of Transaldolase With The Reduc... 28 1.0
pdb|1I2R|A Chain A, Crystal Structure Of Escherichia Coli T... 28 1.0
pdb|1I2N|A Chain A, Crystal Structure Of Escherichia Coli T... 28 1.0
pdb|1ONR|A Chain A, Structure Of Transaldolase B >gi|194198... 28 1.0
pdb|1F4T|A Chain A, Thermophilic P450: Cyp119 From Sulfolob... 27 3.8
pdb|1IO8|A Chain A, Thermophilic Cytochrome P450 (Cyp119) F... 27 3.8
pdb|1AJ6| Novobiocin-Resistant Mutant (R136h) Of The N-Te... 26 5.0
pdb|1EYV|B Chain B, The Crystal Structure Of Nusb From Myco... 26 5.0
pdb|2VSG|A Chain A, A Structural Motif In The Variant Surfa... 25 8.5
>pdb|2AT2|A Chain A, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase)
pdb|2AT2|B Chain B, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase)
pdb|2AT2|C Chain C, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase)
Length = 300
Score = 200 bits (508), Expect = 2e-52
Identities = 113/301 (37%), Positives = 180/301 (59%), Gaps = 14/301 (4%)
Query: 6 RHLLQTSDLSLDEIKLLLEKASVYANDFNAVSLETKEKMHNKIIVALFFENSTRTVSSFE 65
+HL S+LS +EIK LL+ A S +T ++ K LFFE STRT SFE
Sbjct: 2 KHLTTMSELSTEEIKDLLQTAQ------ELKSGKTDNQLTGKFAANLFFEPSTRTRFSFE 55
Query: 66 IASLRLGAKIVKLNMQTSSASKGETLTDTFKNIHAMQPDAIITRHAFSSAPFKLAEFSQC 125
+A +LG ++ L+ ++S KGETL DT + + ++ D + RH+ +L
Sbjct: 56 VAEKKLGMNVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIRHSEDEYYEELVSQVNI 115
Query: 126 PLINAGSGVSAHPTQALLDLLTLYQHFGSLENLKGKKIAFIGDVKNSRVANSNIKLLQRL 185
P++NAG G HPTQ+LLDL+T+Y+ F + KG ++ GD+K+SRVA SN ++L RL
Sbjct: 116 PILNAGDGCGQHPTQSLLDLMTIYEEFNT---FKGLTVSIHGDIKHSRVARSNAEVLTRL 172
Query: 186 GLEIMLCAPSSMLPSVSLKTTH-NVEEAIAFADILMSLRTQTERHNTPIFASLKDYGNAY 244
G ++ PS + T+ +++EA+ +D++M LR Q ERH + + S + Y N Y
Sbjct: 173 GARVLFSGPSEWQDEENTFGTYVSMDEAVESSDVVMLLRIQNERHQSAV--SQEGYLNKY 230
Query: 245 CITQQRLKAHAKNKEVIILHPGPVHRDIDIESAVLEDERSKVLEQVKNGVAMRMAVLEFL 304
+T +R A + II+HP PV+R ++I+ +++E E+S++ +Q+KNGV +RMAV++
Sbjct: 231 GLTVER--AERMKRHAIIMHPAPVNRGVEIDDSLVESEKSRIFKQMKNGVFIRMAVIQCA 288
Query: 305 L 305
L
Sbjct: 289 L 289
>pdb|1D09|A Chain A, Aspartate Transcarbamoylase Complexed With
N-Phosphonacetyl- L-Aspartate (Pala)
pdb|1D09|C Chain C, Aspartate Transcarbamoylase Complexed With
N-Phosphonacetyl- L-Aspartate (Pala)
Length = 310
Score = 129 bits (323), Expect = 5e-31
Identities = 105/316 (33%), Positives = 155/316 (48%), Gaps = 34/316 (10%)
Query: 6 RHLLQTSDLSLDEIKLLLEKAS-VYANDFNAVSLETKEKMHNKIIVALFFENSTRTVSSF 64
+H++ +DLS D++ L+L A+ + AN E + +K+I + FFE STRT SF
Sbjct: 7 KHIISINDLSRDDLNLVLATAAKLKANP-------QPELLKHKVIASCFFEASTRTRLSF 59
Query: 65 EIASLRLGAKIVKLN--MQTSSASKGETLTDTFKNIHAMQPDAIITRHAFSSAPFKLAEF 122
E + RLGA +V + TS KGETL DT I + DAI+ RH A EF
Sbjct: 60 ETSMHRLGASVVGFSDSANTSLGKKGETLADTISVI-STYVDAIVMRHPQEGAARLATEF 118
Query: 123 S-QCPLINAGSGVSAHPTQALLDLLTLYQHFGSLENLKGKKIAFIGDVKNSRVANSNIKL 181
S P++NAG G + HPTQ LLDL T+ Q G L+NL +A +GD+K R +S +
Sbjct: 119 SGNVPVLNAGDGSNQHPTQTLLDLFTIQQTQGRLDNL---HVAMVGDLKYGRTVHSLTQA 175
Query: 182 LQRL-GLEIMLCAPSSML-----------PSVSLKTTHNVEEAIAFADILMSLRTQTERH 229
L + G AP ++ ++ ++EE +A DIL R Q ER
Sbjct: 176 LAKFDGNRFYFIAPDALAMPEYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERL 235
Query: 230 NTPIFASLKDYGNAYCITQQRLKAHAKNKEVIILHPGPVHRDIDIESAVLEDERSKVLEQ 289
+ +A++K KA+ K +LHP P R +I + V + + +Q
Sbjct: 236 DPSEYANVKAQFVLRASDLHNAKANMK-----VLHPLP--RVDEIATDVDKTPHAWYFQQ 288
Query: 290 VKNGVAMRMAVLEFLL 305
NG+ R A+L +L
Sbjct: 289 AGNGIFARQALLALVL 304
>pdb|1RAA|A Chain A, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Fast
Cooling Sa Refinement After 250 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAA|C Chain C, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Fast
Cooling Sa Refinement After 250 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAB|A Chain A, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Slow
Cooling Sa Refinement After 250 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAB|C Chain C, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Slow
Cooling Sa Refinement After 250 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAC|A Chain A, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Fast
Cooling Sa Refinement After 500 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAC|C Chain C, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Fast
Cooling Sa Refinement After 500 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAD|A Chain A, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Slow
Cooling Sa Refinement After 500 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAD|C Chain C, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Slow
Cooling Sa Refinement After 500 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAE|A Chain A, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Fast
Cooling Sa Refinement After 750 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAE|C Chain C, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Fast
Cooling Sa Refinement After 750 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAF|A Chain A, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Slow
Cooling Sa Refinement After 750 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAF|C Chain C, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Slow
Cooling Sa Refinement After 750 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAG|A Chain A, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Fast
Cooling Sa Refinement After 1000 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAG|C Chain C, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Fast
Cooling Sa Refinement After 1000 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAH|A Chain A, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Slow
Cooling Sa Refinement After 1000 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAH|C Chain C, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Slow
Cooling Sa Refinement After 1000 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAI|A Chain A, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp
(Refinement 9: Final Refined Structure)
pdb|1RAI|C Chain C, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp
(Refinement 9: Final Refined Structure)
pdb|3CSU|C Chain C, Catalytic Trimer Of Escherichia Coli Aspartate
Transcarbamoylase
pdb|3CSU|A Chain A, Catalytic Trimer Of Escherichia Coli Aspartate
Transcarbamoylase
pdb|3CSU|B Chain B, Catalytic Trimer Of Escherichia Coli Aspartate
Transcarbamoylase
Length = 310
Score = 127 bits (320), Expect = 1e-30
Identities = 104/316 (32%), Positives = 155/316 (48%), Gaps = 34/316 (10%)
Query: 6 RHLLQTSDLSLDEIKLLLEKAS-VYANDFNAVSLETKEKMHNKIIVALFFENSTRTVSSF 64
+H++ +DLS D++ L+L A+ + AN E + +K+I + FFE STRT SF
Sbjct: 7 KHIISINDLSRDDLNLVLATAAKLKANP-------QPELLKHKVIASCFFEASTRTRLSF 59
Query: 65 EIASLRLGAKIVKLN--MQTSSASKGETLTDTFKNIHAMQPDAIITRHAFSSAPFKLAEF 122
E + RLGA +V + TS KGETL DT I + DAI+ RH A EF
Sbjct: 60 ETSMHRLGASVVGFSDSANTSLGKKGETLADTISVI-STYVDAIVMRHPQEGAARLATEF 118
Query: 123 S-QCPLINAGSGVSAHPTQALLDLLTLYQHFGSLENLKGKKIAFIGDVKNSRVANSNIKL 181
S P++NAG G + HPTQ LLDL T+ + G L+NL +A +GD+K R +S +
Sbjct: 119 SGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNL---HVAMVGDLKYGRTVHSLTQA 175
Query: 182 LQRL-GLEIMLCAPSSML-----------PSVSLKTTHNVEEAIAFADILMSLRTQTERH 229
L + G AP ++ ++ ++EE +A DIL R Q ER
Sbjct: 176 LAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERL 235
Query: 230 NTPIFASLKDYGNAYCITQQRLKAHAKNKEVIILHPGPVHRDIDIESAVLEDERSKVLEQ 289
+ +A++K KA+ K +LHP P R +I + V + + +Q
Sbjct: 236 DPSEYANVKAQFVLRASDLHNAKANMK-----VLHPLP--RVDEIATDVDKTPHAWYFQQ 288
Query: 290 VKNGVAMRMAVLEFLL 305
NG+ R A+L +L
Sbjct: 289 AGNGIFARQALLALVL 304
>pdb|8ATC|A Chain A, Complex Of N-Phosphonacetyl-L-Aspartate With Aspartate
Carbamoyltransferase. X-Ray Refinement, Analysis Of
Conformational Changes And Catalytic And Allosteric
Mechanisms
pdb|8ATC|C Chain C, Complex Of N-Phosphonacetyl-L-Aspartate With Aspartate
Carbamoyltransferase. X-Ray Refinement, Analysis Of
Conformational Changes And Catalytic And Allosteric
Mechanisms
pdb|1NBE|A Chain A, Aspartate Transcarbomylase Regulatory Chain Mutant (T82a)
pdb|1NBE|C Chain C, Aspartate Transcarbomylase Regulatory Chain Mutant (T82a)
pdb|4AT1|A Chain A, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (T State) (E.C.2.1.3.2) Complex With
Adenosine 5-Prime-Triphosphate (ATP)
pdb|4AT1|C Chain C, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (T State) (E.C.2.1.3.2) Complex With
Adenosine 5-Prime-Triphosphate (ATP)
pdb|5AT1|A Chain A, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (T State) (E.C.2.1.3.2) Complex With
Cytidine 5-Prime-Triphosphate (CTP)
pdb|5AT1|C Chain C, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (T State) (E.C.2.1.3.2) Complex With
Cytidine 5-Prime-Triphosphate (CTP)
pdb|6AT1|A Chain A, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (T State) (E.C.2.1.3.2)
pdb|6AT1|C Chain C, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (T State) (E.C.2.1.3.2)
pdb|8AT1|A Chain A, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (R State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide (PAM), Malonate (MAL), And Cytidine
5-Prime-Triphosphate (CTP)
pdb|8AT1|C Chain C, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (R State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide (PAM), Malonate (MAL), And Cytidine
5-Prime-Triphosphate (CTP)
pdb|7AT1|A Chain A, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (R State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide (PAM), Malonate (MAL), And Adenosine
5-Prime-Triphosphate (ATP)
pdb|7AT1|C Chain C, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (R State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide (PAM), Malonate (MAL), And Adenosine
5-Prime-Triphosphate (ATP)
pdb|1AT1|A Chain A, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (R State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide (PAM) And Malonate (MAL)
pdb|1AT1|C Chain C, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (R State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide (PAM) And Malonate (MAL)
pdb|2AT1|A Chain A, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (R State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide (PAM) And Malonate (MAL)
pdb|2AT1|C Chain C, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (R State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide (PAM) And Malonate (MAL)
pdb|3AT1|A Chain A, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (T State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide
pdb|3AT1|C Chain C, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (T State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide
Length = 310
Score = 127 bits (320), Expect = 1e-30
Identities = 104/316 (32%), Positives = 155/316 (48%), Gaps = 34/316 (10%)
Query: 6 RHLLQTSDLSLDEIKLLLEKAS-VYANDFNAVSLETKEKMHNKIIVALFFENSTRTVSSF 64
+H++ +DLS D++ L+L A+ + AN E + +K+I + FFE STRT SF
Sbjct: 7 KHIISINDLSRDDLNLVLATAAKLKANP-------QPELLKHKVIASCFFEASTRTRLSF 59
Query: 65 EIASLRLGAKIVKLN--MQTSSASKGETLTDTFKNIHAMQPDAIITRHAFSSAPFKLAEF 122
+ + RLGA +V + TS KGETL DT I + DAI+ RH A EF
Sbjct: 60 QTSMHRLGASVVGFSDSANTSLGKKGETLADTISVI-STYVDAIVMRHPQEGAARLATEF 118
Query: 123 S-QCPLINAGSGVSAHPTQALLDLLTLYQHFGSLENLKGKKIAFIGDVKNSRVANSNIKL 181
S P++NAG G + HPTQ LLDL T+ Q G L+NL +A +GD+K R +S +
Sbjct: 119 SGNVPVLNAGDGSNQHPTQTLLDLFTIQQTEGRLDNL---HVAMVGDLKYGRTVHSLTQA 175
Query: 182 LQRL-GLEIMLCAPSSML-----------PSVSLKTTHNVEEAIAFADILMSLRTQTERH 229
L + G AP ++ ++ ++EE +A DIL R Q ER
Sbjct: 176 LAKFDGNRFYFIAPDALAMPEYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERL 235
Query: 230 NTPIFASLKDYGNAYCITQQRLKAHAKNKEVIILHPGPVHRDIDIESAVLEDERSKVLEQ 289
+ +A++K KA+ K +LHP P R +I + V + + +Q
Sbjct: 236 DPSEYANVKAQFVLRASDLHNAKANMK-----VLHPLP--RVDEIATDVDKTPHAWYFQQ 288
Query: 290 VKNGVAMRMAVLEFLL 305
NG+ R A+L +L
Sbjct: 289 AGNGIFARQALLALVL 304
>pdb|1EKX|A Chain A, The Isolated, Unregulated Catalytic Trimer Of Aspartate
Transcarbamoylase Complexed With Bisubstrate Analog Pala
(N (Phosphonacetyl)-L-Aspartate)
pdb|1EKX|C Chain C, The Isolated, Unregulated Catalytic Trimer Of Aspartate
Transcarbamoylase Complexed With Bisubstrate Analog Pala
(N (Phosphonacetyl)-L-Aspartate)
pdb|1EKX|B Chain B, The Isolated, Unregulated Catalytic Trimer Of Aspartate
Transcarbamoylase Complexed With Bisubstrate Analog Pala
(N (Phosphonacetyl)-L-Aspartate)
Length = 311
Score = 127 bits (320), Expect = 1e-30
Identities = 104/316 (32%), Positives = 155/316 (48%), Gaps = 34/316 (10%)
Query: 6 RHLLQTSDLSLDEIKLLLEKAS-VYANDFNAVSLETKEKMHNKIIVALFFENSTRTVSSF 64
+H++ +DLS D++ L+L A+ + AN E + +K+I + FFE STRT SF
Sbjct: 8 KHIISINDLSRDDLNLVLATAAKLKANP-------QPELLKHKVIASCFFEASTRTRLSF 60
Query: 65 EIASLRLGAKIVKLN--MQTSSASKGETLTDTFKNIHAMQPDAIITRHAFSSAPFKLAEF 122
E + RLGA +V + TS KGETL DT I + DAI+ RH A EF
Sbjct: 61 ETSMHRLGASVVGFSDSANTSLGKKGETLADTISVI-STYVDAIVMRHPQEGAARLATEF 119
Query: 123 S-QCPLINAGSGVSAHPTQALLDLLTLYQHFGSLENLKGKKIAFIGDVKNSRVANSNIKL 181
S P++NAG G + HPTQ LLDL T+ + G L+NL +A +GD+K R +S +
Sbjct: 120 SGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNL---HVAMVGDLKYGRTVHSLTQA 176
Query: 182 LQRL-GLEIMLCAPSSML-----------PSVSLKTTHNVEEAIAFADILMSLRTQTERH 229
L + G AP ++ ++ ++EE +A DIL R Q ER
Sbjct: 177 LAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERL 236
Query: 230 NTPIFASLKDYGNAYCITQQRLKAHAKNKEVIILHPGPVHRDIDIESAVLEDERSKVLEQ 289
+ +A++K KA+ K +LHP P R +I + V + + +Q
Sbjct: 237 DPSEYANVKAQFVLRASDLHNAKANMK-----VLHPLP--RVDEIATDVDKTPHAWYFQQ 289
Query: 290 VKNGVAMRMAVLEFLL 305
NG+ R A+L +L
Sbjct: 290 AGNGIFARQALLALVL 305
>pdb|9ATC|A Chain A, Atcase Y165f Mutant
Length = 310
Score = 127 bits (319), Expect = 2e-30
Identities = 104/316 (32%), Positives = 155/316 (48%), Gaps = 34/316 (10%)
Query: 6 RHLLQTSDLSLDEIKLLLEKAS-VYANDFNAVSLETKEKMHNKIIVALFFENSTRTVSSF 64
+H++ +DLS D++ L+L A+ + AN E + +K+I + FFE STRT SF
Sbjct: 7 KHIISINDLSRDDLNLVLATAAKLKANP-------QPELLKHKVIASCFFEASTRTRLSF 59
Query: 65 EIASLRLGAKIVKLN--MQTSSASKGETLTDTFKNIHAMQPDAIITRHAFSSAPFKLAEF 122
E + RLGA +V + TS KGETL DT I + DAI+ RH A EF
Sbjct: 60 ETSMHRLGASVVGFSDSANTSLGKKGETLADTISVI-STYVDAIVMRHPQEGAARLATEF 118
Query: 123 S-QCPLINAGSGVSAHPTQALLDLLTLYQHFGSLENLKGKKIAFIGDVKNSRVANSNIKL 181
S P++NAG G + HPTQ LLDL T+ + G L+NL +A +GD+K R +S +
Sbjct: 119 SGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNL---HVAMVGDLKFGRTVHSLTQA 175
Query: 182 LQRL-GLEIMLCAPSSML-----------PSVSLKTTHNVEEAIAFADILMSLRTQTERH 229
L + G AP ++ ++ ++EE +A DIL R Q ER
Sbjct: 176 LAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERL 235
Query: 230 NTPIFASLKDYGNAYCITQQRLKAHAKNKEVIILHPGPVHRDIDIESAVLEDERSKVLEQ 289
+ +A++K KA+ K +LHP P R +I + V + + +Q
Sbjct: 236 DPSEYANVKAQFVLRASDLHNAKANMK-----VLHPLP--RVDEIATDVDKTPHAWYFQQ 288
Query: 290 VKNGVAMRMAVLEFLL 305
NG+ R A+L +L
Sbjct: 289 AGNGIFARQALLALVL 304
>pdb|1F1B|A Chain A, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The R-State In The Presence Of N-
Phosphonacetyl-L-Aspartate
pdb|1F1B|C Chain C, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The R-State In The Presence Of N-
Phosphonacetyl-L-Aspartate
pdb|1EZZ|A Chain A, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The T-State
pdb|1EZZ|C Chain C, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The T-State
Length = 310
Score = 126 bits (316), Expect = 4e-30
Identities = 103/316 (32%), Positives = 155/316 (48%), Gaps = 34/316 (10%)
Query: 6 RHLLQTSDLSLDEIKLLLEKAS-VYANDFNAVSLETKEKMHNKIIVALFFENSTRTVSSF 64
+H++ +DLS D++ L+L A+ + AN E + +K+I + FFE STRT SF
Sbjct: 7 KHIISINDLSRDDLNLVLATAAKLKANP-------QPELLKHKVIASCFFEASTRTRLSF 59
Query: 65 EIASLRLGAKIVKLN--MQTSSASKGETLTDTFKNIHAMQPDAIITRHAFSSAPFKLAEF 122
E + RLGA +V + TS KGETL DT I + DAI+ RH A EF
Sbjct: 60 ETSMHRLGASVVGFSDSANTSLGKKGETLADTISVI-STYVDAIVMRHPQEGAARLATEF 118
Query: 123 S-QCPLINAGSGVSAHPTQALLDLLTLYQHFGSLENLKGKKIAFIGDVKNSRVANSNIKL 181
S P++NAG G + HPTQ LLDL T+ + G L+NL +A +GD+K R +S +
Sbjct: 119 SGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNL---HVAMVGDLKYGRTVHSLTQA 175
Query: 182 LQRL-GLEIMLCAPSSML-----------PSVSLKTTHNVEEAIAFADILMSLRTQTERH 229
L + G AP ++ ++ ++EE +A DIL R Q ER
Sbjct: 176 LAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERL 235
Query: 230 NTPIFASLKDYGNAYCITQQRLKAHAKNKEVIILHPGPVHRDIDIESAVLEDERSKVLEQ 289
+ +A++K KA+ K +LH P+ R +I + V + + +Q
Sbjct: 236 DPSEYANVKAQFVLRASDLHNAKANMK-----VLH--PLARVDEIATDVDKTPHAWYFQQ 288
Query: 290 VKNGVAMRMAVLEFLL 305
NG+ R A+L +L
Sbjct: 289 AGNGIFARQALLALVL 304
>pdb|1ACM|A Chain A, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) Mutant With Arg A 54 (Catalytic Chain)
Replaced By Ala And Arg C 54 (Catalytic Chain) Replaced
By Ala (R(A)54A,R(C)54A) (R State) (E.C.2.1.3.2) Complex
With N-Phosphonacetyl-L-Aspartate (PALA)
pdb|1ACM|C Chain C, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) Mutant With Arg A 54 (Catalytic Chain)
Replaced By Ala And Arg C 54 (Catalytic Chain) Replaced
By Ala (R(A)54A,R(C)54A) (R State) (E.C.2.1.3.2) Complex
With N-Phosphonacetyl-L-Aspartate (PALA)
Length = 310
Score = 125 bits (314), Expect = 6e-30
Identities = 103/316 (32%), Positives = 154/316 (48%), Gaps = 34/316 (10%)
Query: 6 RHLLQTSDLSLDEIKLLLEKAS-VYANDFNAVSLETKEKMHNKIIVALFFENSTRTVSSF 64
+H++ +DLS D++ L+L A+ + AN E + +K+I + FFE ST T SF
Sbjct: 7 KHIISINDLSRDDLNLVLATAAKLKANP-------QPELLKHKVIASCFFEASTATRLSF 59
Query: 65 EIASLRLGAKIVKLN--MQTSSASKGETLTDTFKNIHAMQPDAIITRHAFSSAPFKLAEF 122
+ + RLGA +V + TS KGETL DT I + DAI+ RH A EF
Sbjct: 60 QTSMHRLGASVVGFSDSANTSLGKKGETLADTISVI-STYVDAIVMRHPQEGAARLATEF 118
Query: 123 S-QCPLINAGSGVSAHPTQALLDLLTLYQHFGSLENLKGKKIAFIGDVKNSRVANSNIKL 181
S P++NAG G + HPTQ LLDL T+ Q G L+NL +A +GD+K R +S +
Sbjct: 119 SGNVPVLNAGDGSNQHPTQTLLDLFTIQQTEGRLDNL---HVAMVGDLKYGRTVHSLTQA 175
Query: 182 LQRL-GLEIMLCAPSSML-----------PSVSLKTTHNVEEAIAFADILMSLRTQTERH 229
L + G AP ++ ++ ++EE +A DIL R Q ER
Sbjct: 176 LAKFDGNRFYFIAPDALAMPEYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERL 235
Query: 230 NTPIFASLKDYGNAYCITQQRLKAHAKNKEVIILHPGPVHRDIDIESAVLEDERSKVLEQ 289
+ +A++K KA+ K +LHP P R +I + V + + +Q
Sbjct: 236 DPSEYANVKAQFVLRASDLHNAKANMK-----VLHPLP--RVDEIATDVDKTPHAWYFQQ 288
Query: 290 VKNGVAMRMAVLEFLL 305
NG+ R A+L +L
Sbjct: 289 AGNGIFARQALLALVL 304
>pdb|1I5O|A Chain A, Crystal Structure Of Mutant R105a Of E. Coli Aspartate
Transcarbamoylase
pdb|1I5O|C Chain C, Crystal Structure Of Mutant R105a Of E. Coli Aspartate
Transcarbamoylase
Length = 310
Score = 125 bits (314), Expect = 6e-30
Identities = 103/316 (32%), Positives = 154/316 (48%), Gaps = 34/316 (10%)
Query: 6 RHLLQTSDLSLDEIKLLLEKAS-VYANDFNAVSLETKEKMHNKIIVALFFENSTRTVSSF 64
+H++ +DLS D++ L+L A+ + AN E + +K+I + FFE STRT SF
Sbjct: 7 KHIISINDLSRDDLNLVLATAAKLKANP-------QPELLKHKVIASCFFEASTRTRLSF 59
Query: 65 EIASLRLGAKIVKLN--MQTSSASKGETLTDTFKNIHAMQPDAIITRHAFSSAPFKLAEF 122
E + RLGA +V + TS KGETL DT I + DAI+ H A EF
Sbjct: 60 ETSMHRLGASVVGFSDSANTSLGKKGETLADTISVI-STYVDAIVMAHPQEGAARLATEF 118
Query: 123 S-QCPLINAGSGVSAHPTQALLDLLTLYQHFGSLENLKGKKIAFIGDVKNSRVANSNIKL 181
S P++NAG G + HPTQ LLDL T+ + G L+NL +A +GD+K R +S +
Sbjct: 119 SGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNL---HVAMVGDLKYGRTVHSLTQA 175
Query: 182 LQRL-GLEIMLCAPSSML-----------PSVSLKTTHNVEEAIAFADILMSLRTQTERH 229
L + G AP ++ ++ ++EE +A DIL R Q ER
Sbjct: 176 LAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERL 235
Query: 230 NTPIFASLKDYGNAYCITQQRLKAHAKNKEVIILHPGPVHRDIDIESAVLEDERSKVLEQ 289
+ +A++K KA+ K +LHP P R +I + V + + +Q
Sbjct: 236 DPSEYANVKAQFVLRASDLHNAKANMK-----VLHPLP--RVDEIATDVDKTPHAWYFQQ 288
Query: 290 VKNGVAMRMAVLEFLL 305
NG+ R A+L +L
Sbjct: 289 AGNGIFARQALLALVL 304
>pdb|2ATC|A Chain A, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (E.C.2.1.3.2)
Length = 305
Score = 111 bits (277), Expect = 1e-25
Identities = 101/311 (32%), Positives = 154/311 (49%), Gaps = 31/311 (9%)
Query: 7 HLLQTSDLSLDEIKLLLEKAS-VYANDFNAVSLETKEKMHNKIIVALFFENSTRTVSSFE 65
H++ +DLS D++ L+L A+ + AN E + +K+I + FFE STRT SF+
Sbjct: 8 HIISINDLSRDDLNLVLATAAKLKANP-------QPELLKHKVIASCFFEASTRTRLSFQ 60
Query: 66 IASLRLGAKIVKLN--MQTSSASKGETLTDTFKNIHAMQPDAIITRHAFSSAPFKLAEFS 123
+ RLGA +V + TS KG+TL +T I + DAI+ RH A EFS
Sbjct: 61 TSMHRLGASVVGFSDSANTSLGKKGQTLANTISVI-STYVDAIVMRHPQEGAARLATEFS 119
Query: 124 -QCPLINAGSGVSAHPTQALLDLLTLYQHFGSLENLKGKKIAFIGDVKNSRVANSNIKLL 182
P++NAG G + HPTQ LLDL T+ Q G L NL +A +GD+K R +S + L
Sbjct: 120 GNVPVLNAGDGSNQHPTQTLLDLFTIQQTEGRLNNL---HVAMVGDLKYGRTVHSLTQAL 176
Query: 183 QRL-GLEIMLCAPSSM-LPSVSLKTTHNVEEAIAFA-----DILMSLRTQTERHNTPIFA 235
+ G AP ++ +P L E+ IA++ + +M+ R Q ER + +A
Sbjct: 177 AKFDGNRFYFIAPDALAMPEYILDMLD--EKGIAWSLHSSIEEVMT-RVQKERLDPSEYA 233
Query: 236 SLKDYGNAYCITQQRLKA-HAKNKEVIILHPGPVHRDIDIESAVLEDERSKVLEQVKNGV 294
+K + + L H +LHP P R +I + V + + +Q NG+
Sbjct: 234 XVK---AQFLVRANSLGGLHNAKMNAKVLHPLP--RVDEIATDVDKTPHAWYFQQAGNGI 288
Query: 295 AMRMAVLEFLL 305
R A+L +L
Sbjct: 289 FARQALLALVL 299
>pdb|1A1S| Ornithine Carbamoyltransferase From Pyrococcus Furiosus
Length = 314
Score = 94.4 bits (233), Expect = 1e-20
Identities = 86/324 (26%), Positives = 152/324 (46%), Gaps = 45/324 (13%)
Query: 6 RHLLQTSDLSLDEIKLLLEKASVYANDFNAVSLETKEKMHNKIIVALFFENSTRTVSSFE 65
R LL D + +EI +LE A ++ + + + + K + +F + STRT SFE
Sbjct: 7 RDLLCLQDYTAEEIWTILETAKMF-KIWQKIG-KPHRLLEGKTLAMIFQKPSTRTRVSFE 64
Query: 66 IASLRLGAKIVKLNMQTSSASKGETLTDTFKNIHAMQPDAIITRHAFSSAPFKLAEFSQC 125
+A LG + LN Q +GET+ DT + + + DAI+ R LA+++
Sbjct: 65 VAMAHLGGHALYLNAQDLQLRRGETIADTAR-VLSRYVDAIMARVYDHKDVEDLAKYATV 123
Query: 126 PLINAGSGVSAHPTQALLDLLTLYQHFGSLENLKGKKIAFIGDVKNSRVANSNIKLLQRL 185
P+IN S S HP QAL D +T+++ G+ +KG K+ ++GD N VA+S + +L
Sbjct: 124 PVINGLSDFS-HPCQALADYMTIWEKKGT---IKGVKVVYVGDGNN--VAHSLMIAGTKL 177
Query: 186 GLEIMLCAPSSMLPSV---------------SLKTTHNVEEAIAFADILMSLRTQTERHN 230
G ++++ P P S + H+ +A+ AD++
Sbjct: 178 GADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIY---------- 227
Query: 231 TPIFASLKDYGNA---------YCITQQRLKAHAKNKEVIILHPGPVHRDIDIESAVLED 281
T ++AS+ A + + + +K HAK + + +H P HR ++ V++
Sbjct: 228 TDVWASMGQEAEAEERRKIFRPFQVNKDLVK-HAK-PDYMFMHCLPAHRGEEVTDDVIDS 285
Query: 282 ERSKVLEQVKNGVAMRMAVLEFLL 305
S V +Q +N + + AVL ++
Sbjct: 286 PNSVVWDQAENRLHAQKAVLALVM 309
>pdb|2OTC|A Chain A, Ornithine Transcarbamoylase Complexed With
N-(Phosphonacetyl)-L-Ornithine
pdb|2OTC|B Chain B, Ornithine Transcarbamoylase Complexed With
N-(Phosphonacetyl)-L-Ornithine
pdb|2OTC|C Chain C, Ornithine Transcarbamoylase Complexed With
N-(Phosphonacetyl)-L-Ornithine
pdb|2OTC|D Chain D, Ornithine Transcarbamoylase Complexed With
N-(Phosphonacetyl)-L-Ornithine
pdb|2OTC|E Chain E, Ornithine Transcarbamoylase Complexed With
N-(Phosphonacetyl)-L-Ornithine
pdb|2OTC|F Chain F, Ornithine Transcarbamoylase Complexed With
N-(Phosphonacetyl)-L-Ornithine
pdb|2OTC|G Chain G, Ornithine Transcarbamoylase Complexed With
N-(Phosphonacetyl)-L-Ornithine
pdb|2OTC|H Chain H, Ornithine Transcarbamoylase Complexed With
N-(Phosphonacetyl)-L-Ornithine
pdb|2OTC|I Chain I, Ornithine Transcarbamoylase Complexed With
N-(Phosphonacetyl)-L-Ornithine
Length = 333
Score = 79.0 bits (193), Expect = 7e-16
Identities = 85/334 (25%), Positives = 142/334 (42%), Gaps = 50/334 (14%)
Query: 6 RHLLQTSDLSLDEIKLLLEKASVYANDFNAVSLETKEKMHNKIIVALFFENSTRTVSSFE 65
+H L+ D + E+ LL+ A+ D + E K + K I +F ++STRT SFE
Sbjct: 6 KHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAK--LTGKNIALIFEKDSTRTRCSFE 63
Query: 66 IASLRLGAKIVKLNMQTSSASKGETLTDTFKNIHAMQPDAIITRHAFSSAPFKLAEFSQC 125
+A+ GA++ L S E++ DT + + M D I R LAE+++
Sbjct: 64 VAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMY-DGIQYRGYGQEIVETLAEYARV 122
Query: 126 PLINAGSGVSAHPTQALLDLLTLYQHFGSLENLKGKKIAFIGDVKNSRVANSNIKLLQRL 185
P+ N G HPTQ L DLLT+ +H + + + GD +N+ + NS ++
Sbjct: 123 PVWN-GLTNEFHPTQLLADLLTMQEHLPG-KAFNEMTLVYAGDARNN-MGNSMLEAAALT 179
Query: 186 GLEIMLCAPSSMLPSVSLKT---------------THNVEEAI-----AFADILMSLRTQ 225
GL++ L AP + P +L T T +V + + + D+ +S+
Sbjct: 180 GLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEA 239
Query: 226 TERHNTPIFASLKDYGNAYCITQQRLKAHAKNKEVIILHPGP------------------ 267
E+ I A L++Y ++ N EV LH P
Sbjct: 240 KEKWAERI-ALLREYQ-----VNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFG 293
Query: 268 VHRDIDIESAVLEDERSKVLEQVKNGVAMRMAVL 301
+H +++ V E S V +Q +N + AV+
Sbjct: 294 LHGGMEVTDEVFESAASIVFDQAENRMHTIKAVM 327
>pdb|1DUV|H Chain H, Crystal Structure Of E. Coli Ornithine Transcarbamoylase
Complexed With Ndelta-L-Ornithine-Diaminophosphinyl-N-
Sulphonic Acid (Psorn)
pdb|1DUV|I Chain I, Crystal Structure Of E. Coli Ornithine Transcarbamoylase
Complexed With Ndelta-L-Ornithine-Diaminophosphinyl-N-
Sulphonic Acid (Psorn)
pdb|1AKM|A Chain A, Ornithine Transcarbamylase From Escherichia Coli
pdb|1AKM|B Chain B, Ornithine Transcarbamylase From Escherichia Coli
pdb|1AKM|C Chain C, Ornithine Transcarbamylase From Escherichia Coli
pdb|1DUV|G Chain G, Crystal Structure Of E. Coli Ornithine Transcarbamoylase
Complexed With Ndelta-L-Ornithine-Diaminophosphinyl-N-
Sulphonic Acid (Psorn)
Length = 333
Score = 78.6 bits (192), Expect = 9e-16
Identities = 85/334 (25%), Positives = 141/334 (41%), Gaps = 50/334 (14%)
Query: 6 RHLLQTSDLSLDEIKLLLEKASVYANDFNAVSLETKEKMHNKIIVALFFENSTRTVSSFE 65
+H L+ D + E+ LL+ A+ D + E K + K I +F ++STRT SFE
Sbjct: 6 KHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAK--LTGKNIALIFEKDSTRTRCSFE 63
Query: 66 IASLRLGAKIVKLNMQTSSASKGETLTDTFKNIHAMQPDAIITRHAFSSAPFKLAEFSQC 125
+A+ GA++ L S E++ DT + + M D I R LAE++
Sbjct: 64 VAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMY-DGIQYRGYGQEIVETLAEYASV 122
Query: 126 PLINAGSGVSAHPTQALLDLLTLYQHFGSLENLKGKKIAFIGDVKNSRVANSNIKLLQRL 185
P+ N G HPTQ L DLLT+ +H + + + GD +N+ + NS ++
Sbjct: 123 PVWN-GLTNEFHPTQLLADLLTMQEHLPG-KAFNEMTLVYAGDARNN-MGNSMLEAAALT 179
Query: 186 GLEIMLCAPSSMLPSVSLKT---------------THNVEEAI-----AFADILMSLRTQ 225
GL++ L AP + P +L T T +V + + + D+ +S+
Sbjct: 180 GLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEA 239
Query: 226 TERHNTPIFASLKDYGNAYCITQQRLKAHAKNKEVIILHPGP------------------ 267
E+ I A L++Y ++ N EV LH P
Sbjct: 240 KEKWAERI-ALLREYQ-----VNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFG 293
Query: 268 VHRDIDIESAVLEDERSKVLEQVKNGVAMRMAVL 301
+H +++ V E S V +Q +N + AV+
Sbjct: 294 LHGGMEVTDEVFESAASIVFDQAENRMHTIKAVM 327
>pdb|1DXH|A Chain A, Catabolic Ornithine Carbamoyltransferase From Pseudomonas
Aeruginosa
Length = 335
Score = 76.3 bits (186), Expect = 4e-15
Identities = 59/196 (30%), Positives = 100/196 (50%), Gaps = 11/196 (5%)
Query: 6 RHLLQTSDLSLDEIKLLLEKASVYANDFNAVSLETKEKMH--NKIIVALFFENSTRTVSS 63
R+LL S E++ LL+ + D E+ H K I +F + STRT +
Sbjct: 7 RNLLSLMHHSTRELRYLLD----LSRDLKRAKYTGTEQQHLKRKNIALIFEKTSTRTRCA 62
Query: 64 FEIASLRLGAKIVKLNMQTSSASKGETLTDTFKNIHAMQPDAIITRHAFSSAPFKLAEFS 123
FE+A+ GA + ++ +S E++ DT + + M DAI R +LA+F+
Sbjct: 63 FEVAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRMY-DAIEYRGFKQEIVEELAKFA 121
Query: 124 QCPLINAGSGVSAHPTQALLDLLTLYQHFGSLENLKGKKIAFIGDVKNSRVANSNIKLLQ 183
P+ N G HPTQ L D+LT+ +H S + L A++GD +N+ + NS + +
Sbjct: 122 GVPVFN-GLTDEYHPTQMLADVLTMREH--SDKPLHDISYAYLGDARNN-MGNSLLLIGA 177
Query: 184 RLGLEIMLCAPSSMLP 199
+LG+++ + AP ++ P
Sbjct: 178 KLGMDVRIAAPKALWP 193
>pdb|1ORT|A Chain A, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|B Chain B, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|C Chain C, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|D Chain D, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|E Chain E, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|F Chain F, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|G Chain G, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|H Chain H, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|I Chain I, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|J Chain J, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|K Chain K, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|L Chain L, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
Length = 335
Score = 75.9 bits (185), Expect = 6e-15
Identities = 59/196 (30%), Positives = 100/196 (50%), Gaps = 11/196 (5%)
Query: 6 RHLLQTSDLSLDEIKLLLEKASVYANDFNAVSLETKEKMH--NKIIVALFFENSTRTVSS 63
R+LL S E++ LL+ + D E+ H K I +F + STRT +
Sbjct: 7 RNLLSLMHHSTRELRYLLD----LSRDLKRAKYTGTEQQHLKRKNIALIFEKTSTRTRCA 62
Query: 64 FEIASLRLGAKIVKLNMQTSSASKGETLTDTFKNIHAMQPDAIITRHAFSSAPFKLAEFS 123
FE+A+ GA + ++ +S E++ DT + + M DAI R +LA+F+
Sbjct: 63 FEVAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRMY-DAIGYRGFKQEIVEELAKFA 121
Query: 124 QCPLINAGSGVSAHPTQALLDLLTLYQHFGSLENLKGKKIAFIGDVKNSRVANSNIKLLQ 183
P+ N G HPTQ L D+LT+ +H S + L A++GD +N+ + NS + +
Sbjct: 122 GVPVFN-GLTDEYHPTQMLADVLTMREH--SDKPLHDISYAYLGDARNN-MGNSLLLIGA 177
Query: 184 RLGLEIMLCAPSSMLP 199
+LG+++ + AP ++ P
Sbjct: 178 KLGMDVRIAAPKALWP 193
>pdb|1FVO|A Chain A, Crystal Structure Of Human Ornithine Transcarbamylase
Complexed With Carbamoyl Phosphate
pdb|1FVO|B Chain B, Crystal Structure Of Human Ornithine Transcarbamylase
Complexed With Carbamoyl Phosphate
pdb|1OTH|A Chain A, Crystal Structure Of Human Ornithine Transcarbamoylase
Complexed With N-Phosphonacetyl-L-Ornithine
pdb|1C9Y|A Chain A, Human Ornithine Transcarbamylase: Crystallographic
Insights Into Substrate Recognition And Catalytic
Mechanism
pdb|1EP9|A Chain A, Human Ornithine Transcarbamylase: Crystallographic
Insights Into Substrate Recognition And Conformational
Change
Length = 321
Score = 65.1 bits (157), Expect = 1e-11
Identities = 86/330 (26%), Positives = 137/330 (41%), Gaps = 49/330 (14%)
Query: 4 KCRHLLQTSDLSLDEIKLLLEKASVYANDFNAVSLETKEK------MHNKIIVALFFENS 57
K R LL + + +EIK +L ++ + K+K + K + +F + S
Sbjct: 5 KGRDLLTLKNFTGEEIKYMLWLSA-------DLKFRIKQKGEYLPLLQGKSLGMIFEKRS 57
Query: 58 TRTVSSFEIASLRLGAKIVKLNMQTSSASKGETLTDTFKNIHAMQPDAIITRHAFSSAPF 117
TRT S E LG L Q E+LTDT + + +M DA++ R S
Sbjct: 58 TRTRLSTETGFALLGGHPCFLTTQDIHLGVNESLTDTARVLSSMA-DAVLARVYKQSDLD 116
Query: 118 KLAEFSQCPLINAGSGVSAHPTQALLDLLTLYQHFGSLENLKGKKIAFIGDVKNSRVANS 177
LA+ + P+IN S + HP Q L D LTL +H+ S LKG +++IGD N + +S
Sbjct: 117 TLAKEASIPIINGLSDLY-HPIQILADYLTLQEHYSS---LKGLTLSWIGDGNN--ILHS 170
Query: 178 NIKLLQRLGLEIMLCAPSSMLPSVS----------------LKTTHNVEEA----IAFAD 217
+ + G+ + P P S L T +E A + D
Sbjct: 171 IMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITD 230
Query: 218 ILMSLRTQTERHNTPIFASLKDYGNAYCITQQRLKAHAKNKEVIILHPGPVHRDIDIESA 277
+S+ + E+ L+ + Y +T + K A + LH P + +++
Sbjct: 231 TWISMGREEEKKK-----RLQAF-QGYQVTMKTAKVAA--SDWTFLHCLP-RKPEEVDDE 281
Query: 278 VLEDERSKVLEQVKNGVAMRMAVLEFLLLD 307
V RS V + +N MAV+ LL D
Sbjct: 282 VFYSPRSLVFPEAENRKWTIMAVMVSLLTD 311
>pdb|1JS1|X Chain X, Crystal Structure Of A New Transcarbamylase From The
Anaerobic Bacterium Bacteroides Fragilis At 2.0 A
Resolution
pdb|1JS1|Y Chain Y, Crystal Structure Of A New Transcarbamylase From The
Anaerobic Bacterium Bacteroides Fragilis At 2.0 A
Resolution
pdb|1JS1|Z Chain Z, Crystal Structure Of A New Transcarbamylase From The
Anaerobic Bacterium Bacteroides Fragilis At 2.0 A
Resolution
Length = 324
Score = 31.2 bits (69), Expect = 0.16
Identities = 33/127 (25%), Positives = 60/127 (46%), Gaps = 22/127 (17%)
Query: 46 NKIIVALFFENSTRTVSSFEIASLRLGAKIVKLNMQTSSASKGET----LTDTFKNIHAM 101
NK ++ +FF +S RT S + A+L LG ++ L++ A K ET + D K H +
Sbjct: 36 NKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDI-NQGAWKLETERGVIMDGDKPEHLL 94
Query: 102 QPDAIITRH-----AFSSAPFKLAEFSQCPLI------NAGSGV------SAHPTQALLD 144
+ ++ + S A F+ E+ +I ++G V + HP Q+ D
Sbjct: 95 EAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFAD 154
Query: 145 LLTLYQH 151
L+T+ ++
Sbjct: 155 LITIEEY 161
>pdb|1I2O|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant E96a
pdb|1I2O|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant E96a
Length = 316
Score = 28.9 bits (63), Expect = 0.77
Identities = 17/65 (26%), Positives = 31/65 (47%)
Query: 173 RVANSNIKLLQRLGLEIMLCAPSSMLPSVSLKTTHNVEEAIAFADILMSLRTQTERHNTP 232
++ ++ KL +GLEI+ P + +V + +++ E +IA A L+ L N
Sbjct: 68 QIVDATDKLAVNIGLEILKLVPGRISTAVDARLSYDTEASIAKAKRLIKLYNDAGISNDR 127
Query: 233 IFASL 237
I L
Sbjct: 128 ILIKL 132
>pdb|1I2Q|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant T156a
pdb|1I2Q|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant T156a
Length = 316
Score = 28.5 bits (62), Expect = 1.0
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 173 RVANSNIKLLQRLGLEIMLCAPSSMLPSVSLKTTHNVEEAIAFADILMSLRTQTERHNTP 232
++ ++ KL +GLEI+ P + V + +++ E +IA A L+ L N
Sbjct: 68 QIVDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYNDAGISNDR 127
Query: 233 IFASL 237
I L
Sbjct: 128 ILIKL 132
>pdb|1I2P|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant D17a
pdb|1I2P|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant D17a
Length = 316
Score = 28.5 bits (62), Expect = 1.0
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 173 RVANSNIKLLQRLGLEIMLCAPSSMLPSVSLKTTHNVEEAIAFADILMSLRTQTERHNTP 232
++ ++ KL +GLEI+ P + V + +++ E +IA A L+ L N
Sbjct: 68 QIVDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYNDAGISNDR 127
Query: 233 IFASL 237
I L
Sbjct: 128 ILIKL 132
>pdb|1UCW|A Chain A, Complex Of Transaldolase With The Reduced Schiff-Base
Intermediate
pdb|1UCW|B Chain B, Complex Of Transaldolase With The Reduced Schiff-Base
Intermediate
Length = 317
Score = 28.5 bits (62), Expect = 1.0
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 173 RVANSNIKLLQRLGLEIMLCAPSSMLPSVSLKTTHNVEEAIAFADILMSLRTQTERHNTP 232
++ ++ KL +GLEI+ P + V + +++ E +IA A L+ L N
Sbjct: 69 QIVDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYNDAGISNDR 128
Query: 233 IFASL 237
I L
Sbjct: 129 ILIXL 133
>pdb|1I2R|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant S176a
pdb|1I2R|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant S176a
Length = 316
Score = 28.5 bits (62), Expect = 1.0
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 173 RVANSNIKLLQRLGLEIMLCAPSSMLPSVSLKTTHNVEEAIAFADILMSLRTQTERHNTP 232
++ ++ KL +GLEI+ P + V + +++ E +IA A L+ L N
Sbjct: 68 QIVDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYNDAGISNDR 127
Query: 233 IFASL 237
I L
Sbjct: 128 ILIKL 132
>pdb|1I2N|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant N35a
pdb|1I2N|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant N35a
Length = 316
Score = 28.5 bits (62), Expect = 1.0
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 173 RVANSNIKLLQRLGLEIMLCAPSSMLPSVSLKTTHNVEEAIAFADILMSLRTQTERHNTP 232
++ ++ KL +GLEI+ P + V + +++ E +IA A L+ L N
Sbjct: 68 QIVDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYNDAGISNDR 127
Query: 233 IFASL 237
I L
Sbjct: 128 ILIKL 132
>pdb|1ONR|A Chain A, Structure Of Transaldolase B
pdb|1ONR|B Chain B, Structure Of Transaldolase B
Length = 316
Score = 28.5 bits (62), Expect = 1.0
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 173 RVANSNIKLLQRLGLEIMLCAPSSMLPSVSLKTTHNVEEAIAFADILMSLRTQTERHNTP 232
++ ++ KL +GLEI+ P + V + +++ E +IA A L+ L N
Sbjct: 68 QIVDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYNDAGISNDR 127
Query: 233 IFASL 237
I L
Sbjct: 128 ILIKL 132
>pdb|1F4T|A Chain A, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
With 4-Phenylimidazole Bound
pdb|1F4T|B Chain B, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
With 4-Phenylimidazole Bound
pdb|1IO7|A Chain A, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
pdb|1IO9|A Chain A, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
pdb|1F4U|A Chain A, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
pdb|1F4U|B Chain B, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
pdb|1IO7|B Chain B, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
pdb|1IO9|B Chain B, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
Length = 368
Score = 26.6 bits (57), Expect = 3.8
Identities = 24/101 (23%), Positives = 46/101 (44%), Gaps = 15/101 (14%)
Query: 153 GSLENLKGKKIAFIGDVKN---------SRVANSNIKLLQRLGLEIMLCAPSS------M 197
G + L K + IG VK+ SRV NSN+ +++LG I+L + +
Sbjct: 159 GEIFELGKKYLELIGYVKDHLNSGTEVVSRVVNSNLSDIEKLGYIILLLIAGNETTTNLI 218
Query: 198 LPSVSLKTTHNVEEAIAFADILMSLRTQTERHNTPIFASLK 238
SV T N+ + I ++ + + R++ P+ +++
Sbjct: 219 SNSVIDFTRFNLWQRIREENLYLKAIEEALRYSPPVMRTVR 259
>pdb|1IO8|A Chain A, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
pdb|1IO8|B Chain B, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
Length = 368
Score = 26.6 bits (57), Expect = 3.8
Identities = 24/101 (23%), Positives = 46/101 (44%), Gaps = 15/101 (14%)
Query: 153 GSLENLKGKKIAFIGDVKN---------SRVANSNIKLLQRLGLEIMLCAPSS------M 197
G + L K + IG VK+ SRV NSN+ +++LG I+L + +
Sbjct: 159 GEIFELGKKYLELIGYVKDHLNSGTEVVSRVVNSNLSDIEKLGYIILLLIAGNETTTNLI 218
Query: 198 LPSVSLKTTHNVEEAIAFADILMSLRTQTERHNTPIFASLK 238
SV T N+ + I ++ + + R++ P+ +++
Sbjct: 219 SNSVIDFTRFNLWQRIREENLYLKAIEEALRYSPPVMRTVR 259
>pdb|1AJ6| Novobiocin-Resistant Mutant (R136h) Of The N-Terminal 24 Kda
Fragment Of Dna Gyrase B Complexed With Novobiocin At
2.3 Angstroms Resolution
Length = 219
Score = 26.2 bits (56), Expect = 5.0
Identities = 21/88 (23%), Positives = 41/88 (45%), Gaps = 4/88 (4%)
Query: 210 EEAIAFADILMSLRTQTERHNTPIFASLKDYGNAYCITQQRLKAHAKNKEVIILHPGPVH 269
EE ++ A+++M++ + + S K G + + + A ++ E++I H G +H
Sbjct: 84 EEGVSAAEVIMTVLHAGGKFDDN---SYKVSGGLHGVGVSVVNALSQKLELVIQHEGKIH 140
Query: 270 RDIDIESAVLEDERSKVLEQVKNGVAMR 297
R I E V + + E K G +R
Sbjct: 141 RQI-YEHGVPQAPLAVTGETEKTGTMVR 167
>pdb|1EYV|B Chain B, The Crystal Structure Of Nusb From Mycobacterium
Tuberculosis
pdb|1EYV|A Chain A, The Crystal Structure Of Nusb From Mycobacterium
Tuberculosis
Length = 156
Score = 26.2 bits (56), Expect = 5.0
Identities = 20/69 (28%), Positives = 31/69 (43%), Gaps = 12/69 (17%)
Query: 47 KIIVALFFENSTRTVSSFEIASLRLG-----AKIVKLNMQTSSASKGETLTDTFKNIHAM 101
K VAL FE R +S+ E+ R I +L+ T++ ++G + HA
Sbjct: 15 KRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARG-------VSEHAA 67
Query: 102 QPDAIITRH 110
D +IT H
Sbjct: 68 HIDDLITAH 76
>pdb|2VSG|A Chain A, A Structural Motif In The Variant Surface Glycoproteins Of
Trypanosoma Brucei
pdb|2VSG|B Chain B, A Structural Motif In The Variant Surface Glycoproteins Of
Trypanosoma Brucei
Length = 358
Score = 25.4 bits (54), Expect = 8.5
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 252 KAHAKNKEVIILHPGPVHRDIDIESAVLEDERSKVLEQVK 291
KAHA E++ L GP ++E+ L +++ L+ +K
Sbjct: 242 KAHASITELLQLAQGPKPGQTEVETMKLLAQKTAALDSIK 281
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.132 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,475,765
Number of Sequences: 13198
Number of extensions: 53429
Number of successful extensions: 218
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 143
Number of HSP's gapped (non-prelim): 30
length of query: 307
length of database: 2,899,336
effective HSP length: 88
effective length of query: 219
effective length of database: 1,737,912
effective search space: 380602728
effective search space used: 380602728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)