BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645699|ref|NP_207876.1| hypothetical protein
[Helicobacter pylori 26695]
         (171 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1QQS|A  Chain A, Neutrophil Gelatinase Associated Lipoca...    26  2.1
pdb|1DFV|B  Chain B, Crystal Structure Of Human Neutrophil G...    25  4.7
pdb|1NGL|A  Chain A, Human Neutrophil Gelatinase-Associated ...    25  4.7

>pdb|1QQS|A Chain A, Neutrophil Gelatinase Associated Lipocalin Homodimer
          Length = 174

 Score = 26.2 bits (56), Expect = 2.1
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 31  DLVLEKKIQASRKGEITQDNVPIITAIATHLNDVDSGTYYDHEYFLVEIFTQNNDWIDDG 90
           D  +   +   + GE T  N+     + ++L  V S  Y  H     +  +QN +     
Sbjct: 74  DYAIRTFVPGCQPGEFTLGNIKSYPGLTSYLVRVVSTNYNQHAMVFFKKVSQNRE----- 128

Query: 91  YISYELFG-TKPIGSE 105
           Y    L+G TK + SE
Sbjct: 129 YFKITLYGRTKELTSE 144



>pdb|1DFV|B Chain B, Crystal Structure Of Human Neutrophil Gelatinase
           Associated Lipocalin Monomer
 pdb|1DFV|A Chain A, Crystal Structure Of Human Neutrophil Gelatinase
           Associated Lipocalin Monomer
          Length = 177

 Score = 25.0 bits (53), Expect = 4.7
 Identities = 18/69 (26%), Positives = 29/69 (41%), Gaps = 6/69 (8%)

Query: 38  IQASRKGEITQDNVPIITAIATHLNDVDSGTYYDHEYFLVEIFTQNNDWIDDGYISYELF 97
           +   + GE T  N+     + ++L  V S  Y  H     +  +QN +     Y    L+
Sbjct: 84  VPGCQPGEFTLGNIKSYPGLTSYLVRVVSTNYNQHAMVFFKKVSQNRE-----YFKITLY 138

Query: 98  G-TKPIGSE 105
           G TK + SE
Sbjct: 139 GRTKELTSE 147



>pdb|1NGL|A Chain A, Human Neutrophil Gelatinase-Associated Lipocalin (Hngal),
           Regularised Average Nmr Structure
          Length = 179

 Score = 25.0 bits (53), Expect = 4.7
 Identities = 18/69 (26%), Positives = 29/69 (41%), Gaps = 6/69 (8%)

Query: 38  IQASRKGEITQDNVPIITAIATHLNDVDSGTYYDHEYFLVEIFTQNNDWIDDGYISYELF 97
           +   + GE T  N+     + ++L  V S  Y  H     +  +QN +     Y    L+
Sbjct: 85  VPGCQPGEFTLGNIKSYPGLTSYLVRVVSTNYNQHAMVFFKKVSQNRE-----YFKITLY 139

Query: 98  G-TKPIGSE 105
           G TK + SE
Sbjct: 140 GRTKELTSE 148



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.322    0.141    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,051,929
Number of Sequences: 13198
Number of extensions: 45109
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 79
Number of HSP's gapped (non-prelim): 3
length of query: 171
length of database: 2,899,336
effective HSP length: 82
effective length of query: 89
effective length of database: 1,817,100
effective search space: 161721900
effective search space used: 161721900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)