BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645702|ref|NP_207879.1| transketolase A (tktA)
[Helicobacter pylori 26695]
(641 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1GPU|A Chain A, Transketolase Complex With Reaction Int... 469 e-133
pdb|1TKB|A Chain A, Transketolase (E.C.2.2.1.1) Complexed W... 469 e-133
pdb|1AY0|A Chain A, Identification Of Catalytically Importa... 465 e-132
pdb|1L8A|A Chain A, E. Coli Pyruvate Dehydrogenase >gi|2221... 49 2e-06
pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid De... 32 0.22
pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-P... 29 1.8
pdb|1DGU|A Chain A, Homology-Based Model Of Calcium-Saturat... 28 3.1
pdb|1EP3|A Chain A, Crystal Structure Of Lactococcus Lactis... 28 4.1
pdb|1PVC|2 Chain 2, Mol_id: 1; Molecule: Poliovirus Type 3,... 27 5.4
pdb|1E19|A Chain A, Structure Of The Carbamate Kinase-Like ... 27 7.0
>pdb|1GPU|A Chain A, Transketolase Complex With Reaction Intermediate
pdb|1GPU|B Chain B, Transketolase Complex With Reaction Intermediate
pdb|1TRK|A Chain A, Transketolase (E.C.2.2.1.1)
pdb|1TRK|B Chain B, Transketolase (E.C.2.2.1.1)
pdb|1NGS|A Chain A, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-Phosphate
pdb|1NGS|B Chain B, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-Phosphate
Length = 680
Score = 469 bits (1207), Expect = e-133
Identities = 280/658 (42%), Positives = 388/658 (58%), Gaps = 32/658 (4%)
Query: 12 KSMANALRFLCADMIDKANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGG 71
K + +R L D + KANSGHPG LG+A VL + +NPTNP W+NRDR V S G
Sbjct: 9 KLAVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQMRMNPTNPDWINRDRFVLSNG 68
Query: 72 HASALAYSLLHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVG 131
HA AL YS+LHL G+DLS+EDLK+FRQL S+TPGHPE G+E+TTGPLGQG +NAVG
Sbjct: 69 HAVALLYSMLHLTGYDLSIEDLKQFRQLGSRTPGHPEF-ELPGVEVTTGPLGQGISNAVG 127
Query: 132 FSMASQYAQNLLDKEAIS---HKVYCLCGDGDLQEGISYESASLAGHLRLDNLIVIYDSN 188
+MA +K + + Y GDG LQEGIS E++SLAGHL+L NLI IYD N
Sbjct: 128 MAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDN 187
Query: 189 QISIEGAINISFSEQVKTRFVAQNWEVL--ECDGHDYQAIHNALEEAKKS-TKPTLLIAH 245
+I+I+GA +ISF E V R+ A WEVL E D I A+ +AK S KPTL+
Sbjct: 188 KITIDGATSISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMT 247
Query: 246 TIIGKGAVGLEGSEKTHGSPLNKEVLKQSKENAQINPNESFIISPKNKMHFEEVKVR-GV 304
T IG G++ GS HG+PL + +KQ K NP++SF++ + H+++ ++ GV
Sbjct: 248 TTIGYGSLH-AGSHSVHGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGV 306
Query: 305 SLEALWEKSLS------PKIKEKIHALKDFDFSA---IHYPTF-KKGESLATRVSNGMIL 354
W K S P++ ++ A PT+ K ++ATR + +L
Sbjct: 307 EANNKWNKLFSEYQKKFPELGAELARRLSGQLPANWESKLPTYTAKDSAVATRKLSETVL 366
Query: 355 NAIAKECEGFLGGSADLAPSNNTQLKHSGDFP---------LGQNLHFGIREHAMGAITN 405
+ + +GGSADL PSN T+ K + DF G+ + +GIREHAMGAI N
Sbjct: 367 EDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMN 426
Query: 406 ALAAYGL-FVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQ 464
++A+G + P+ TF F Y ++RLSAL +++ THDSIGVGEDG THQPIE
Sbjct: 427 GISAFGANYKPYGGTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIET 486
Query: 465 LNHLRALPNFYAFRPSDAFENTACMQIAL-SLNAPSGLILSRQNLPVLDEVSKERVLKGA 523
L H R+LPN +RP+D E +A + +L S + PS + LSRQNLP L+ S E KG
Sbjct: 487 LAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNLPQLEGSSIESASKGG 546
Query: 524 YVKHHSKDPIITLVASGSEVSLALESAKILERENIQTQVISAPCFDLLIEQDESYLKELF 583
YV +P I LVA+GSEVSL++E+AK L +NI+ +V+S P F +Q Y +
Sbjct: 547 YVLQDVANPDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSVL 606
Query: 584 KGKV--LVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENITAQAKRLL 639
V + +E W ++A + G+D FG+S K ++F+ FGF+ E + +A++ +
Sbjct: 607 PDNVPIMSVEVLATTCWGKYAHQSFGIDRFGASGKAPEVFKFFGFTPEGVAERAQKTI 664
>pdb|1TKB|A Chain A, Transketolase (E.C.2.2.1.1) Complexed With
1'-Deazo-Thiamin Diphosphate And Calcium
pdb|1TKB|B Chain B, Transketolase (E.C.2.2.1.1) Complexed With
1'-Deazo-Thiamin Diphosphate And Calcium
pdb|1TKA|A Chain A, Transketolase (E.C.2.2.1.1) Complexed With
3'-Deazo-Thiamin Diphosphate And Calcium
pdb|1TKA|B Chain B, Transketolase (E.C.2.2.1.1) Complexed With
3'-Deazo-Thiamin Diphosphate And Calcium
pdb|1TKC|A Chain A, Transketolase (E.C.2.2.1.1) Complexed With
6'-Methyl-Thiamin Diphosphate And Calcium
pdb|1TKC|B Chain B, Transketolase (E.C.2.2.1.1) Complexed With
6'-Methyl-Thiamin Diphosphate And Calcium
Length = 678
Score = 469 bits (1207), Expect = e-133
Identities = 280/658 (42%), Positives = 388/658 (58%), Gaps = 32/658 (4%)
Query: 12 KSMANALRFLCADMIDKANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGG 71
K + +R L D + KANSGHPG LG+A VL + +NPTNP W+NRDR V S G
Sbjct: 7 KLAVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQMRMNPTNPDWINRDRFVLSNG 66
Query: 72 HASALAYSLLHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVG 131
HA AL YS+LHL G+DLS+EDLK+FRQL S+TPGHPE G+E+TTGPLGQG +NAVG
Sbjct: 67 HAVALLYSMLHLTGYDLSIEDLKQFRQLGSRTPGHPEF-ELPGVEVTTGPLGQGISNAVG 125
Query: 132 FSMASQYAQNLLDKEAIS---HKVYCLCGDGDLQEGISYESASLAGHLRLDNLIVIYDSN 188
+MA +K + + Y GDG LQEGIS E++SLAGHL+L NLI IYD N
Sbjct: 126 MAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDN 185
Query: 189 QISIEGAINISFSEQVKTRFVAQNWEVL--ECDGHDYQAIHNALEEAKKS-TKPTLLIAH 245
+I+I+GA +ISF E V R+ A WEVL E D I A+ +AK S KPTL+
Sbjct: 186 KITIDGATSISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMT 245
Query: 246 TIIGKGAVGLEGSEKTHGSPLNKEVLKQSKENAQINPNESFIISPKNKMHFEEVKVR-GV 304
T IG G++ GS HG+PL + +KQ K NP++SF++ + H+++ ++ GV
Sbjct: 246 TTIGYGSLH-AGSHSVHGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGV 304
Query: 305 SLEALWEKSLS------PKIKEKIHALKDFDFSA---IHYPTF-KKGESLATRVSNGMIL 354
W K S P++ ++ A PT+ K ++ATR + +L
Sbjct: 305 EANNKWNKLFSEYQKKFPELGAELARRLSGQLPANWESKLPTYTAKDSAVATRKLSETVL 364
Query: 355 NAIAKECEGFLGGSADLAPSNNTQLKHSGDFP---------LGQNLHFGIREHAMGAITN 405
+ + +GGSADL PSN T+ K + DF G+ + +GIREHAMGAI N
Sbjct: 365 EDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMN 424
Query: 406 ALAAYGL-FVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQ 464
++A+G + P+ TF F Y ++RLSAL +++ THDSIGVGEDG THQPIE
Sbjct: 425 GISAFGANYKPYGGTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIET 484
Query: 465 LNHLRALPNFYAFRPSDAFENTACMQIAL-SLNAPSGLILSRQNLPVLDEVSKERVLKGA 523
L H R+LPN +RP+D E +A + +L S + PS + LSRQNLP L+ S E KG
Sbjct: 485 LAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNLPQLEGSSIESASKGG 544
Query: 524 YVKHHSKDPIITLVASGSEVSLALESAKILERENIQTQVISAPCFDLLIEQDESYLKELF 583
YV +P I LVA+GSEVSL++E+AK L +NI+ +V+S P F +Q Y +
Sbjct: 545 YVLQDVANPDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSVL 604
Query: 584 KGKV--LVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENITAQAKRLL 639
V + +E W ++A + G+D FG+S K ++F+ FGF+ E + +A++ +
Sbjct: 605 PDNVPIMSVEVLATTCWGKYAHQSFGIDRFGASGKAPEVFKFFGFTPEGVAERAQKTI 662
>pdb|1AY0|A Chain A, Identification Of Catalytically Important Residues In
Yeast Transketolase
pdb|1AY0|B Chain B, Identification Of Catalytically Important Residues In
Yeast Transketolase
Length = 680
Score = 465 bits (1197), Expect = e-132
Identities = 279/658 (42%), Positives = 387/658 (58%), Gaps = 32/658 (4%)
Query: 12 KSMANALRFLCADMIDKANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGG 71
K + +R L D + KANSGHPG LG+A VL + +NPTNP W+NRDR V S G
Sbjct: 9 KLAVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQMRMNPTNPDWINRDRFVLSNG 68
Query: 72 HASALAYSLLHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVG 131
HA AL YS+LHL G+DLS+EDLK+FRQL S+TPGHPE G+E+TTGPLGQG +NAVG
Sbjct: 69 HAVALLYSMLHLTGYDLSIEDLKQFRQLGSRTPGHPEF-ELPGVEVTTGPLGQGISNAVG 127
Query: 132 FSMASQYAQNLLDKEAIS---HKVYCLCGDGDLQEGISYESASLAGHLRLDNLIVIYDSN 188
+MA +K + + Y GDG LQEGIS E++SLAGHL+L NLI IYD N
Sbjct: 128 MAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDN 187
Query: 189 QISIEGAINISFSEQVKTRFVAQNWEVL--ECDGHDYQAIHNALEEAKKS-TKPTLLIAH 245
+I+I+GA +ISF E V R+ A WEVL E D I A+ +AK S KPTL+
Sbjct: 188 KITIDGATSISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMT 247
Query: 246 TIIGKGAVGLEGSEKTHGSPLNKEVLKQSKENAQINPNESFIISPKNKMHFEEVKVR-GV 304
T IG G++ GS G+PL + +KQ K NP++SF++ + H+++ ++ GV
Sbjct: 248 TTIGYGSLH-AGSHSVAGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGV 306
Query: 305 SLEALWEKSLS------PKIKEKIHALKDFDFSA---IHYPTF-KKGESLATRVSNGMIL 354
W K S P++ ++ A PT+ K ++ATR + +L
Sbjct: 307 EANNKWNKLFSEYQKKFPELGAELARRLSGQLPANWESKLPTYTAKDSAVATRKLSETVL 366
Query: 355 NAIAKECEGFLGGSADLAPSNNTQLKHSGDFP---------LGQNLHFGIREHAMGAITN 405
+ + +GGSADL PSN T+ K + DF G+ + +GIREHAMGAI N
Sbjct: 367 EDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMN 426
Query: 406 ALAAYGL-FVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQ 464
++A+G + P+ TF F Y ++RLSAL +++ THDSIGVGEDG THQPIE
Sbjct: 427 GISAFGANYKPYGGTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIET 486
Query: 465 LNHLRALPNFYAFRPSDAFENTACMQIAL-SLNAPSGLILSRQNLPVLDEVSKERVLKGA 523
L H R+LPN +RP+D E +A + +L S + PS + LSRQNLP L+ S E KG
Sbjct: 487 LAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNLPQLEGSSIESASKGG 546
Query: 524 YVKHHSKDPIITLVASGSEVSLALESAKILERENIQTQVISAPCFDLLIEQDESYLKELF 583
YV +P I LVA+GSEVSL++E+AK L +NI+ +V+S P F +Q Y +
Sbjct: 547 YVLQDVANPDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSVL 606
Query: 584 KGKV--LVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENITAQAKRLL 639
V + +E W ++A + G+D FG+S K ++F+ FGF+ E + +A++ +
Sbjct: 607 PDNVPIMSVEVLATTCWGKYAHQSFGIDRFGASGKAPEVFKFFGFTPEGVAERAQKTI 664
>pdb|1L8A|A Chain A, E. Coli Pyruvate Dehydrogenase
pdb|1L8A|B Chain B, E. Coli Pyruvate Dehydrogenase
Length = 886
Score = 48.9 bits (115), Expect = 2e-06
Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 8/158 (5%)
Query: 66 LVFSGGHASALAYSLLHLWGFDLSLEDLKRFRQ-LHSK---TPGHPELHHTEGIEITTGP 121
LV+ GH S Y+ L G L+ E L FRQ +H + HP+L E + T
Sbjct: 136 LVYFQGHISPGVYARAFLEG-RLTQEQLDNFRQEVHGNGLSSYPHPKLM-PEFWQFPTVS 193
Query: 122 LGQGFANAVGFSMASQYAQNLLDKEAISHKVYCLCGDGDLQEGISYESASLAGHLRLDNL 181
+G G A+ + +Y ++ K+ VY GDG++ E S + ++A +LDNL
Sbjct: 194 MGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNL 253
Query: 182 IVIYDSNQISIEGAI--NISFSEQVKTRFVAQNWEVLE 217
+ + + N ++G + N +++ F W V++
Sbjct: 254 VFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIK 291
>pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase
Length = 400
Score = 32.0 bits (71), Expect = 0.22
Identities = 40/167 (23%), Positives = 70/167 (40%), Gaps = 26/167 (15%)
Query: 89 SLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLDKEAI 148
++ DL + RQ+ P H + I++ PL AVG + A++ A
Sbjct: 136 NISDLGKGRQM----PVHYGCKERHFVTISS-PLATQIPQAVGAAYAAKRAN-------A 183
Query: 149 SHKVYCLCGDGDLQEGISYESASLAGHLRLDNLIVIYDSNQISIEGAINISFSEQVKTRF 208
+ V C G+G EG ++ + A L + ++ AI+ SEQ +
Sbjct: 184 NRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGY-----AISTPTSEQYRGDG 238
Query: 209 VAQNWE-----VLECDGHDYQAIHNALEEAKK----STKPTLLIAHT 246
+A + DG+D A++NA +EA++ +P L+ A T
Sbjct: 239 IAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMT 285
>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
Length = 398
Score = 28.9 bits (63), Expect = 1.8
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 97 RQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLDKEA---ISHKVY 153
R ++ ++P +P +H + + G V + + Y Q L+ A +
Sbjct: 152 RVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATX 211
Query: 154 CLCGDGDLQEGISYESASLAGHLRLDNL 181
L G GD+ GI S +L +RL L
Sbjct: 212 YLSGHGDITAGIVVGSQALVDRIRLQGL 239
>pdb|1DGU|A Chain A, Homology-Based Model Of Calcium-Saturated Cib (Calcium-And
Integrin-Binding Protein)
pdb|1DGV|A Chain A, Homology-Based Model Of Apo Cib (Calcium-And Integrin-
Binding Protein)
Length = 183
Score = 28.1 bits (61), Expect = 3.1
Identities = 32/134 (23%), Positives = 59/134 (43%), Gaps = 27/134 (20%)
Query: 88 LSLEDLK------RFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQN 141
LSL +LK R ++ S +P L + +++ + F++ + S YA
Sbjct: 51 LSLPELKANPFKERICRVFSTSPAKDSLSFEDFLDLLSV-----FSDTATPDIKSHYAFR 105
Query: 142 LLD--------KEAISHKVYCLCGDGDLQEGISYESASLAGHLRLDNLIVIYDSNQISIE 193
+ D +E +S V CL G+G+ + E L +DN++ + + I +
Sbjct: 106 IFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQL-----IDNIL---EESDIDRD 157
Query: 194 GAINISFSEQVKTR 207
G IN+S + V +R
Sbjct: 158 GTINLSEFQHVISR 171
>pdb|1EP3|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B. Data Collected Under Cryogenic
Conditions.
pdb|1EP1|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B
pdb|1EP2|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B Complexed With Orotate
Length = 311
Score = 27.7 bits (60), Expect = 4.1
Identities = 36/143 (25%), Positives = 54/143 (37%), Gaps = 20/143 (13%)
Query: 430 SIRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLNHLRAL-----PNFYAFRPSDAFE 484
S++L L LK I G GE+ A + + +L + P F P A E
Sbjct: 8 SVKLPGL-DLKNPIIPASGCFGFGEEYAKYYDLNKLGSIMVKATTLHPRFGNPTPRVA-E 65
Query: 485 NTACMQIALSLNAPSGLILSRQNLPVLDEVSKERVLKGAYVKHHSKDPIITLVASGSEVS 544
+ M A+ L P ++ + LP L+E E PII VA E
Sbjct: 66 TASGMLNAIGLQNPGLEVIMTEKLPWLNENFPEL-------------PIIANVAGSEEAD 112
Query: 545 LALESAKILERENIQTQVISAPC 567
AKI + N++ ++ C
Sbjct: 113 YVAVCAKIGDAANVKAIELNISC 135
>pdb|1PVC|2 Chain 2, Mol_id: 1; Molecule: Poliovirus Type 3, Sabin Strain;
Chain: 0, 1, 2, 3, 4; Other_details: P3SABIN
P3LEON12A(1)B
pdb|1VBB|2 Chain 2, Poliovirus (Type 3, Sabin Strain) (P3SABIN, P3LEON12A(1)B)
COMPLEXED WITH R80633
pdb|1VBC|2 Chain 2, Poliovirus (Type 3, Sabin Strain) (P3SABIN, P3LEON12A(1)B)
COMPLEXED WITH R77975
pdb|1VBE|2 Chain 2, Poliovirus (Type 3, Sabin Strain, Mutant 242-H2) Complexed
With R78206
pdb|1PIV|2 Chain 2, Poliovirus (Type 3, Sabin Strain) (P3SABIN; P3LEON12A(1)B)
COMPLEXED WITH DISOXARIL (WIN 51711)
pdb|1VBA|2 Chain 2, Poliovirus (Type 3, Sabin Strain) (P3SABIN, P3LEON12A(1)B)
COMPLEXED WITH R78206
Length = 271
Score = 27.3 bits (59), Expect = 5.4
Identities = 16/37 (43%), Positives = 20/37 (53%), Gaps = 2/37 (5%)
Query: 135 ASQYAQNLLDKEAISHKVYCLCGDGDLQEGISYESAS 171
AS++ Q L AI YCL GD D Q SY +A+
Sbjct: 114 ASKFHQGALGVFAIPE--YCLAGDSDKQRYTSYANAN 148
>pdb|1E19|A Chain A, Structure Of The Carbamate Kinase-Like Carbamoyl Phosphate
Synthetase From The Hyperthermophilic Archaeon
Pyrococcus Furiosus Bound To Adp
pdb|1E19|B Chain B, Structure Of The Carbamate Kinase-Like Carbamoyl Phosphate
Synthetase From The Hyperthermophilic Archaeon
Pyrococcus Furiosus Bound To Adp
Length = 314
Score = 26.9 bits (58), Expect = 7.0
Identities = 37/155 (23%), Positives = 63/155 (39%), Gaps = 38/155 (24%)
Query: 224 QAIHNALEEAKKSTKPTLLIAHTIIGKGAVGLEGSEKTHGSPLNKEVLKQ-SKENAQINP 282
QA+ N L + K +I TI+ K + K G ++E K+ ++E I
Sbjct: 95 QALKNELRKRGMEKKVVTIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVK 154
Query: 283 NES------FIISPKNKMHFEEVKV-----RGV--------------------SLEALWE 311
+S + SP K H E + RGV +EA+ +
Sbjct: 155 EDSGRGWRRVVPSPDPKGHVEAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVID 214
Query: 312 KSLS-PKIKEKIHA-----LKDFDFSAIHYPTFKK 340
K L+ K+ E+++A L D + +A++Y T K+
Sbjct: 215 KDLAGEKLAEEVNADIFMILTDVNGAALYYGTEKE 249
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.135 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,619,733
Number of Sequences: 13198
Number of extensions: 150041
Number of successful extensions: 344
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 314
Number of HSP's gapped (non-prelim): 12
length of query: 641
length of database: 2,899,336
effective HSP length: 94
effective length of query: 547
effective length of database: 1,658,724
effective search space: 907322028
effective search space used: 907322028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)