BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644740|ref|NP_206910.1| co-chaperone and heat shock
protein (grpE) [Helicobacter pylori 26695]
(189 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DKG|A Chain A, Crystal Structure Of The Nucleotide Exc... 95 4e-21
pdb|2TMA|A Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain... 37 0.001
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 37 0.001
pdb|1MC8|A Chain A, Crystal Structure Of Flap Endonuclease-... 28 0.66
pdb|1EWR|B Chain B, Crystal Structure Of Taq Muts >gi|11514... 27 1.1
pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed Wi... 27 1.1
pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp... 27 1.1
pdb|1T7P|A Chain A, T7 Dna Polymerase Complexed To Dna Prim... 26 3.3
pdb|1HM6|A Chain A, X-Ray Structure Of Full-Length Annexin ... 25 4.3
pdb|1UAA|B Chain B, Structure Of The Rep Helicase-Single St... 25 4.3
pdb|1TIP|A Chain A, The Bisphosphatase Domain Of The Bifunc... 25 4.3
pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta >g... 25 5.6
pdb|1FBT|A Chain A, The Bisphosphatase Domain Of The Bifunc... 25 5.6
pdb|1LHT| Loggerhead Sea Turtle Myoglobin (Cyano-Met) >gi... 25 7.3
pdb|1ELO| Elongation Factor G Without Nucleotide >gi|1633... 25 7.3
pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G ... 25 7.3
pdb|1IW7|D Chain D, Crystal Structure Of The Rna Polymerase... 25 7.3
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation F... 24 9.6
pdb|1MHY|G Chain G, Methane Monooxygenase Hydroxylase >gi|2... 24 9.6
>pdb|1DKG|A Chain A, Crystal Structure Of The Nucleotide Exchange Factor Grpe
Bound To The Atpase Domain Of The Molecular Chaperone
Dnak
pdb|1DKG|B Chain B, Crystal Structure Of The Nucleotide Exchange Factor Grpe
Bound To The Atpase Domain Of The Molecular Chaperone
Dnak
Length = 197
Score = 95.1 bits (235), Expect = 4e-21
Identities = 60/182 (32%), Positives = 102/182 (55%), Gaps = 10/182 (5%)
Query: 8 EHDHLSQKEPEFCEKACKEQQYEEKQEAGEKEGEIKEDFELKYKEMHEKYLRVHADFENV 67
+H+ + EPE A EQ ++ E ++ E + LRV A+ EN+
Sbjct: 21 QHEEIEAVEPE----ASAEQVDPRDEKVANLEAQLAE----AQTRERDGILRVKAEMENL 72
Query: 68 KKRLERDKSMALEYAYEKIALDLLPVIDALLGAHKSAAEEDKE-SALTKGLELTMEKLHE 126
++R E D A ++A EK +LLPVID+L A + A + + + SA+ + +ELT++ + +
Sbjct: 73 RRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVADKANPDMSAMVEDIELTLKSMLD 132
Query: 127 VLARHGIEGI-ECLEEFDPHFHNAIMQVKSEEKENGKIVQVLQQGYKYKGRVLRPAMVSI 185
V+ + G+E I E DP+ H AI V+S++ G ++ ++Q+GY GR +R AMV++
Sbjct: 133 VVRKFGVEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTV 192
Query: 186 AK 187
AK
Sbjct: 193 AK 194
>pdb|2TMA|A Chain A, Tropomyosin
pdb|2TMA|B Chain B, Tropomyosin
Length = 284
Score = 37.0 bits (84), Expect = 0.001
Identities = 32/111 (28%), Positives = 56/111 (49%), Gaps = 7/111 (6%)
Query: 22 KACKEQQYEEKQEAGEKEGE-IKEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMALE 80
+A K+++ E QE KE + I ED + KY+E+ K + + +D E ++R E + E
Sbjct: 133 RAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAE 192
Query: 81 YAYE-KIALDLLPVIDALLGAHKSAAEEDKESALTKGLELTMEKLHEVLAR 130
E K + L ++A A K + +EDK + +++ +KL E R
Sbjct: 193 LEEEIKTVTNNLKSLEA--QAEKYSQKEDK---YEEEIKVLSDKLKEAETR 238
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 37.0 bits (84), Expect = 0.001
Identities = 32/111 (28%), Positives = 56/111 (49%), Gaps = 7/111 (6%)
Query: 22 KACKEQQYEEKQEAGEKEGE-IKEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMALE 80
+A K+++ E QE KE + I ED + KY+E+ K + + +D E ++R E + E
Sbjct: 133 RAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAE 192
Query: 81 YAYE-KIALDLLPVIDALLGAHKSAAEEDKESALTKGLELTMEKLHEVLAR 130
E K + L ++A A K + +EDK + +++ +KL E R
Sbjct: 193 LEEEIKTVTNNLKSLEA--QAEKYSQKEDK---YEEEIKVLSDKLKEAETR 238
>pdb|1MC8|A Chain A, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
pdb|1MC8|B Chain B, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
Length = 343
Score = 28.1 bits (61), Expect = 0.66
Identities = 22/70 (31%), Positives = 35/70 (49%), Gaps = 8/70 (11%)
Query: 30 EEKQEAGEKEGEIKEDFELKYKEMHEKYLRVHADFENVKK---RLERDKSMALEYAYEKI 86
E K++ EK E +E+ ELK+KE K + E +K R + M +E A + +
Sbjct: 85 EFKRKELEKRREAREEAELKWKEALAK-----GNLEEARKYAQRATKVNEMLIEDAKKLL 139
Query: 87 ALDLLPVIDA 96
L +P+I A
Sbjct: 140 QLMGIPIIQA 149
>pdb|1EWR|B Chain B, Crystal Structure Of Taq Muts
pdb|1EWR|A Chain A, Crystal Structure Of Taq Muts
Length = 649
Score = 27.3 bits (59), Expect = 1.1
Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 29/144 (20%)
Query: 62 ADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGAH-----KSAAEEDKESALTKG 116
AD E + RLE ++ + + +L +LP + ALLG S +E+ E+AL +
Sbjct: 214 ADLERLATRLELGRASPKDLGALRRSLQILPELRALLGEEVGLPDLSPLKEELEAALVED 273
Query: 117 LELTMEKLHEVLARHGIEGIECLEEFDP--------HFHNAIMQVKSEEKENGKI-VQVL 167
L + EG E +DP H ++ EE+E + + L
Sbjct: 274 PPLKVS-----------EGGLIREGYDPDLDALRAAHREGVAYFLELEERERERTGIPTL 322
Query: 168 QQGYK----YKGRVLRPAMVSIAK 187
+ GY Y V RP + K
Sbjct: 323 KVGYNAVFGYYLEVTRPYYERVPK 346
>pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
pdb|1EWQ|B Chain B, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
Length = 765
Score = 27.3 bits (59), Expect = 1.1
Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 29/144 (20%)
Query: 62 ADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGAH-----KSAAEEDKESALTKG 116
AD E + RLE ++ + + +L +LP + ALLG S +E+ E+AL +
Sbjct: 330 ADLERLATRLELGRASPKDLGALRRSLQILPELRALLGEEVGLPDLSPLKEELEAALVED 389
Query: 117 LELTMEKLHEVLARHGIEGIECLEEFDP--------HFHNAIMQVKSEEKENGKI-VQVL 167
L + EG E +DP H ++ EE+E + + L
Sbjct: 390 PPLKVS-----------EGGLIREGYDPDLDALRAAHREGVAYFLELEERERERTGIPTL 438
Query: 168 QQGYK----YKGRVLRPAMVSIAK 187
+ GY Y V RP + K
Sbjct: 439 KVGYNAVFGYYLEVTRPYYERVPK 462
>pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
pdb|1FW6|B Chain B, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
Length = 768
Score = 27.3 bits (59), Expect = 1.1
Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 29/144 (20%)
Query: 62 ADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGAH-----KSAAEEDKESALTKG 116
AD E + RLE ++ + + +L +LP + ALLG S +E+ E+AL +
Sbjct: 330 ADLERLATRLELGRASPKDLGALRRSLQILPELRALLGEEVGLPDLSPLKEELEAALVED 389
Query: 117 LELTMEKLHEVLARHGIEGIECLEEFDP--------HFHNAIMQVKSEEKENGKI-VQVL 167
L + EG E +DP H ++ EE+E + + L
Sbjct: 390 PPLKVS-----------EGGLIREGYDPDLDALRAAHREGVAYFLELEERERERTGIPTL 438
Query: 168 QQGYK----YKGRVLRPAMVSIAK 187
+ GY Y V RP + K
Sbjct: 439 KVGYNAVFGYYLEVTRPYYERVPK 462
>pdb|1T7P|A Chain A, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
Length = 698
Score = 25.8 bits (55), Expect = 3.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 36 GEKEGEIKEDFELKYKEMHEKYL 58
GE +GE K+DF+ +E E+Y+
Sbjct: 127 GEMKGEYKDDFKRMLEEQGEEYV 149
>pdb|1HM6|A Chain A, X-Ray Structure Of Full-Length Annexin 1
pdb|1HM6|B Chain B, X-Ray Structure Of Full-Length Annexin 1
Length = 346
Score = 25.4 bits (54), Expect = 4.3
Identities = 18/71 (25%), Positives = 32/71 (44%)
Query: 59 RVHADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGAHKSAAEEDKESALTKGLE 118
R +A + +K ++K L+ A +K L + L + + D+ A KGL
Sbjct: 72 RTNAQRQQIKAAYLQEKGKPLDEALKKALTGHLEEVALALLKTPAQFDADELRAAMKGLG 131
Query: 119 LTMEKLHEVLA 129
+ L+E+LA
Sbjct: 132 TDEDTLNEILA 142
>pdb|1UAA|B Chain B, Structure Of The Rep Helicase-Single Stranded Dna Complex
At 3.0 Angstroms Resolution
pdb|1UAA|A Chain A, Structure Of The Rep Helicase-Single Stranded Dna Complex
At 3.0 Angstroms Resolution
Length = 673
Score = 25.4 bits (54), Expect = 4.3
Identities = 10/22 (45%), Positives = 15/22 (67%)
Query: 167 LQQGYKYKGRVLRPAMVSIAKN 188
L+Q Y+ GR+L+ A + IA N
Sbjct: 273 LEQNYRSSGRILKAANILIANN 294
>pdb|1TIP|A Chain A, The Bisphosphatase Domain Of The Bifunctional Rat Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
pdb|1TIP|B Chain B, The Bisphosphatase Domain Of The Bifunctional Rat Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
Length = 191
Score = 25.4 bits (54), Expect = 4.3
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 24 CKEQQYEEKQEAGEKEGEIKEDFELKYK-EMHEKYLRVHADFENVKKRLERDKSM 77
C+E YEE QE +E +++ + +Y+ E Y + E V LER +++
Sbjct: 84 CEEMTYEEIQEHYPEEFALRDQDKYRYRYPKGESYEDLVQRLEPVIMELERQENV 138
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 25.0 bits (53), Expect = 5.6
Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 12 LSQKEPEFCEKACKEQQYEEKQEAGEKEGEIKEDFELKYKE 52
L++K + +K +E+Q E + EKEG+++++ +Y+E
Sbjct: 186 LTEKTARYQQKL-EEKQAENLRAIQEKEGQLQQEAVAEYEE 225
>pdb|1FBT|A Chain A, The Bisphosphatase Domain Of The Bifunctional Rat Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
pdb|1FBT|B Chain B, The Bisphosphatase Domain Of The Bifunctional Rat Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
Length = 190
Score = 25.0 bits (53), Expect = 5.6
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 24 CKEQQYEEKQEAGEKEGEIKEDFELKYK-EMHEKYLRVHADFENVKKRLERDKSM 77
C+E YEE QE +E +++ + +Y+ E Y + E V LER +++
Sbjct: 83 CEEXTYEEIQEHYPEEFALRDQDKYRYRYPKGESYEDLVQRLEPVIXELERQENV 137
>pdb|1LHT| Loggerhead Sea Turtle Myoglobin (Cyano-Met)
pdb|1LHS| Loggerhead Sea Turtle Myoglobin (Aquo-Met)
Length = 153
Score = 24.6 bits (52), Expect = 7.3
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 48 LKYKEMHEKYLRVHADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGAHKSAAEE 107
LK K HE+ L+ A+ K ++ LE+ E I + + H S
Sbjct: 76 LKQKNNHEQELKPLAESHATKHKIP---VKYLEFICEII-------VKVIAEKHPSDFGA 125
Query: 108 DKESALTKGLELTMEKLHEVLARHGIEG 135
D ++A+ K LEL + G +G
Sbjct: 126 DSQAAMKKALELFRNDMASKYKEFGFQG 153
>pdb|1ELO| Elongation Factor G Without Nucleotide
pdb|1DAR| Elongation Factor G In Complex With Gdp
Length = 691
Score = 24.6 bits (52), Expect = 7.3
Identities = 21/57 (36%), Positives = 31/57 (53%), Gaps = 4/57 (7%)
Query: 38 KEGEIKEDFELKYKEMHEKYLRVHADF-ENVK-KRLERDKSMALEY--AYEKIALDL 90
+E I E++ + +E HEK + V ADF EN+ K LE ++ E A K +DL
Sbjct: 197 REIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDL 253
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
Length = 691
Score = 24.6 bits (52), Expect = 7.3
Identities = 21/57 (36%), Positives = 31/57 (53%), Gaps = 4/57 (7%)
Query: 38 KEGEIKEDFELKYKEMHEKYLRVHADF-ENVK-KRLERDKSMALEY--AYEKIALDL 90
+E I E++ + +E HEK + V ADF EN+ K LE ++ E A K +DL
Sbjct: 197 REIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDL 253
>pdb|1IW7|D Chain D, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|N Chain N, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
Length = 1524
Score = 24.6 bits (52), Expect = 7.3
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 11/99 (11%)
Query: 28 QYEEKQEAGEK-------EGEIKEDFELKYKEMHEKYLRVHADFENVK--KRLERDKSMA 78
+Y +K+ AG + E E + E+ E+ E YL A+ E V K LE +
Sbjct: 214 EYVKKERAGLRLPLAAWVEKEAYKPGEI-LAELPEPYL-FRAEEEGVVELKELEEGAFLV 271
Query: 79 LEYAYEKIALDLLPVIDALLGAHKSAAEEDKESALTKGL 117
L E +A LPV L H E+ + A KGL
Sbjct: 272 LRREDEPVATYFLPVGMTPLVVHGEIVEKGQPLAEAKGL 310
>pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1EFG|A Chain A, Elongation Factor G Complexed With Guanosine
5'-Diphosphate
Length = 691
Score = 24.3 bits (51), Expect = 9.6
Identities = 21/57 (36%), Positives = 30/57 (51%), Gaps = 4/57 (7%)
Query: 38 KEGEIKEDFELKYKEMHEKYLRVHADF-ENVK-KRLERDKSMALEY--AYEKIALDL 90
+E I E++ +E HEK + V ADF EN+ K LE ++ E A K +DL
Sbjct: 197 REIPIPEEYLDNAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDL 253
>pdb|1MHY|G Chain G, Methane Monooxygenase Hydroxylase
pdb|1MHZ|G Chain G, Methane Monooxygenase Hydroxylase
Length = 169
Score = 24.3 bits (51), Expect = 9.6
Identities = 13/57 (22%), Positives = 26/57 (44%), Gaps = 8/57 (14%)
Query: 44 EDFELKYKEMHEKYLRVHADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGA 100
+DF L Y K + D++ +++++E S+ + + LPV D + A
Sbjct: 34 QDFRLAYTSPFRKSYDIDVDYQYIERKIEEKLSV--------LKTEKLPVADLITKA 82
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.312 0.131 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,078,872
Number of Sequences: 13198
Number of extensions: 43577
Number of successful extensions: 115
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 102
Number of HSP's gapped (non-prelim): 20
length of query: 189
length of database: 2,899,336
effective HSP length: 83
effective length of query: 106
effective length of database: 1,803,902
effective search space: 191213612
effective search space used: 191213612
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)