BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645713|ref|NP_207890.1|
2-keto-3-deoxy-6-phosphogluconate aldolase (eda) [Helicobacter pylori
26695]
(208 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EUA|A Chain A, Schiff Base Intermediate In Kdpg Aldola... 215 3e-57
pdb|1FWR|A Chain A, Crystal Structure Of Kdpg Aldolase Doub... 211 5e-56
pdb|1LTD|A Chain A, Flavocytochrome B2 (E.C.1.1.2.3) Comple... 33 0.018
pdb|1LCO|A Chain A, Mol_id: 1; Molecule: L-Lactate Dehydrog... 33 0.018
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombina... 33 0.018
pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombina... 33 0.018
pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant >g... 33 0.018
pdb|1EJ6|A Chain A, Reovirus Core 28 0.77
pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Gly... 28 0.77
pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand... 28 0.77
pdb|1RK2|B Chain B, E. Coli Ribokinase Complexed With Ribos... 28 1.0
pdb|1QI4|A Chain A, Mutant (E219g) Maltotetraose-Forming Ex... 25 8.5
pdb|1SMR|A Chain A, Renin (E.C.3.4.23.15) Complex With The ... 25 8.5
pdb|1GU6|A Chain A, Structure Of The Periplasmic Cytochrome... 25 8.5
>pdb|1EUA|A Chain A, Schiff Base Intermediate In Kdpg Aldolase From Escherichia
Coli
pdb|1EUA|B Chain B, Schiff Base Intermediate In Kdpg Aldolase From Escherichia
Coli
pdb|1EUA|C Chain C, Schiff Base Intermediate In Kdpg Aldolase From Escherichia
Coli
pdb|1EUN|B Chain B, Structure Of 2-Keto-3-Deoxy-6-Phosphogluconate Aldolase
From Escherichia Coli
pdb|1EUN|C Chain C, Structure Of 2-Keto-3-Deoxy-6-Phosphogluconate Aldolase
From Escherichia Coli
pdb|1FQ0|A Chain A, Kdpg Aldolase From Escherichia Coli
pdb|1FQ0|B Chain B, Kdpg Aldolase From Escherichia Coli
pdb|1FQ0|C Chain C, Kdpg Aldolase From Escherichia Coli
pdb|1EUN|A Chain A, Structure Of 2-Keto-3-Deoxy-6-Phosphogluconate Aldolase
From Escherichia Coli
Length = 213
Score = 215 bits (547), Expect = 3e-57
Identities = 100/198 (50%), Positives = 144/198 (72%)
Query: 8 VLQISPIVPVVVIENIKDAVPLAQSLIEGGIPIIEVTLRSSCALEAIELIAKNMPKMRVG 67
+L P+VPV+V++ ++ AVP+A++L+ GG+ ++EVTLR+ CA++AI IAK +P+ VG
Sbjct: 11 ILTTGPVVPVIVVKKLEHAVPMAKALVAGGVRVLEVTLRTECAVDAIRAIAKEVPEAIVG 70
Query: 68 AGTILNPTQLEQAQNRGAEFLISPGLTIKLLEHAKKKDMPLIPGVSSSSEVMQALELGYS 127
AGT+LNP QL + GA+F ISPGLT LL+ A + +PLIPG+S+ SE+M ++ G
Sbjct: 71 AGTVLNPQQLAEVTEAGAQFAISPGLTEPLLKAATEGTIPLIPGISTVSELMLGMDYGLK 130
Query: 128 ALKFFPAEYCGGVKLLNAFNGPFKGVKFCPTGGISADNMRSYLNLENVLCVGGSWLTPKN 187
KFFPAE GGVK L A GPF V+FCPTGGIS N R YL L++VLC+GGSWL P +
Sbjct: 131 EFKFFPAEANGGVKALQAIAGPFSQVRFCPTGGISPANYRDYLALKSVLCIGGSWLVPAD 190
Query: 188 LIQNKEWDKITEICKRAL 205
++ ++D+IT++ + A+
Sbjct: 191 ALEAGDYDRITKLAREAV 208
>pdb|1FWR|A Chain A, Crystal Structure Of Kdpg Aldolase Double Mutant
K133qT161K
pdb|1FWR|B Chain B, Crystal Structure Of Kdpg Aldolase Double Mutant
K133qT161K
pdb|1FWR|C Chain C, Crystal Structure Of Kdpg Aldolase Double Mutant
K133qT161K
Length = 213
Score = 211 bits (537), Expect = 5e-56
Identities = 98/198 (49%), Positives = 143/198 (71%)
Query: 8 VLQISPIVPVVVIENIKDAVPLAQSLIEGGIPIIEVTLRSSCALEAIELIAKNMPKMRVG 67
+L P+VPV+V++ ++ AVP+A++L+ GG+ ++EVTLR+ CA++AI IAK +P+ VG
Sbjct: 11 ILTTGPVVPVIVVKKLEHAVPMAKALVAGGVRVLEVTLRTECAVDAIRAIAKEVPEAIVG 70
Query: 68 AGTILNPTQLEQAQNRGAEFLISPGLTIKLLEHAKKKDMPLIPGVSSSSEVMQALELGYS 127
AGT+LNP QL + GA+F ISPGLT LL+ A + +PLIPG+S+ SE+M ++ G
Sbjct: 71 AGTVLNPQQLAEVTEAGAQFAISPGLTEPLLKAATEGTIPLIPGISTVSELMLGMDYGLK 130
Query: 128 ALKFFPAEYCGGVKLLNAFNGPFKGVKFCPTGGISADNMRSYLNLENVLCVGGSWLTPKN 187
+FFPAE GGVK L A GPF V+FCP GGIS N R YL L++VLC+GGSWL P +
Sbjct: 131 EFQFFPAEANGGVKALQAIAGPFSQVRFCPKGGISPANYRDYLALKSVLCIGGSWLVPAD 190
Query: 188 LIQNKEWDKITEICKRAL 205
++ ++D+IT++ + A+
Sbjct: 191 ALEAGDYDRITKLAREAV 208
>pdb|1LTD|A Chain A, Flavocytochrome B2 (E.C.1.1.2.3) Complexed With Sulfite
pdb|1LTD|B Chain B, Flavocytochrome B2 (E.C.1.1.2.3) Complexed With Sulfite
Length = 506
Score = 33.5 bits (75), Expect = 0.018
Identities = 22/62 (35%), Positives = 36/62 (57%), Gaps = 4/62 (6%)
Query: 72 LNPTQLEQAQ--NRGAEFLISPGLTIKLLEHAKKK-DMPL-IPGVSSSSEVMQALELGYS 127
+ T +E++Q +R I P LT K +E KKK +P+ I GV + +V++A E+G S
Sbjct: 302 MKKTNVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVS 361
Query: 128 AL 129
+
Sbjct: 362 GV 363
>pdb|1LCO|A Chain A, Mol_id: 1; Molecule: L-Lactate Dehydrogenase; Chain: A, B;
Synonym: Cytochrome C Oxidoreductase, Flavocytochrome
B2; Ec: 1.1.2.3; Engineered: Yes; Mutation: Tyr 143 Phe;
Heterogen: Phenyl-Pyruvate
pdb|1LDC|A Chain A, L-Lactate Dehydrogenase: Cytochrome C Oxidoreductase
(Flavocytochrome B2) (E.C.1.1.2.3) Mutant With Tyr 143
Replaced By Phe (Y143f) Complexed With Pyruvate
pdb|1LCO|B Chain B, Mol_id: 1; Molecule: L-Lactate Dehydrogenase; Chain: A, B;
Synonym: Cytochrome C Oxidoreductase, Flavocytochrome
B2; Ec: 1.1.2.3; Engineered: Yes; Mutation: Tyr 143 Phe;
Heterogen: Phenyl-Pyruvate
pdb|1LDC|B Chain B, L-Lactate Dehydrogenase: Cytochrome C Oxidoreductase
(Flavocytochrome B2) (E.C.1.1.2.3) Mutant With Tyr 143
Replaced By Phe (Y143f) Complexed With Pyruvate
Length = 511
Score = 33.5 bits (75), Expect = 0.018
Identities = 22/62 (35%), Positives = 36/62 (57%), Gaps = 4/62 (6%)
Query: 72 LNPTQLEQAQ--NRGAEFLISPGLTIKLLEHAKKK-DMPL-IPGVSSSSEVMQALELGYS 127
+ T +E++Q +R I P LT K +E KKK +P+ I GV + +V++A E+G S
Sbjct: 307 MKKTNVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVS 366
Query: 128 AL 129
+
Sbjct: 367 GV 368
>pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild-Type Enzyme
pdb|1FCB|A Chain A, Flavocytochrome b2 (E.C.1.1.2.3)
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild-Type Enzyme
pdb|1FCB|B Chain B, Flavocytochrome b2 (E.C.1.1.2.3)
Length = 511
Score = 33.5 bits (75), Expect = 0.018
Identities = 22/62 (35%), Positives = 36/62 (57%), Gaps = 4/62 (6%)
Query: 72 LNPTQLEQAQ--NRGAEFLISPGLTIKLLEHAKKK-DMPL-IPGVSSSSEVMQALELGYS 127
+ T +E++Q +R I P LT K +E KKK +P+ I GV + +V++A E+G S
Sbjct: 307 MKKTNVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVS 366
Query: 128 AL 129
+
Sbjct: 367 GV 368
>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild-Type Enzyme
pdb|1KBJ|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild-Type Enzyme
Length = 412
Score = 33.5 bits (75), Expect = 0.018
Identities = 22/62 (35%), Positives = 36/62 (57%), Gaps = 4/62 (6%)
Query: 72 LNPTQLEQAQ--NRGAEFLISPGLTIKLLEHAKKK-DMPL-IPGVSSSSEVMQALELGYS 127
+ T +E++Q +R I P LT K +E KKK +P+ I GV + +V++A E+G S
Sbjct: 208 MKKTNVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVS 267
Query: 128 AL 129
+
Sbjct: 268 GV 269
>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant
pdb|1QCW|B Chain B, Flavocytochrome B2, Arg289lys Mutant
Length = 410
Score = 33.5 bits (75), Expect = 0.018
Identities = 22/62 (35%), Positives = 36/62 (57%), Gaps = 4/62 (6%)
Query: 72 LNPTQLEQAQ--NRGAEFLISPGLTIKLLEHAKKK-DMPL-IPGVSSSSEVMQALELGYS 127
+ T +E++Q +R I P LT K +E KKK +P+ I GV + +V++A E+G S
Sbjct: 206 MKKTNVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVS 265
Query: 128 AL 129
+
Sbjct: 266 GV 267
>pdb|1EJ6|A Chain A, Reovirus Core
Length = 1289
Score = 28.1 bits (61), Expect = 0.77
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 27 VPLAQSLIEGGIPIIEVTLRSSCALEAIELIAKNMPKMRV 66
VPL+ L + ++E T SS ++ EL+ K MP MR+
Sbjct: 982 VPLSYDLRWTRLALLESTTLSSASIRIAELMYKYMPIMRI 1021
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 28.1 bits (61), Expect = 0.77
Identities = 27/145 (18%), Positives = 63/145 (42%), Gaps = 8/145 (5%)
Query: 1 MQDKIIEVLQISPIVPVVVIENIK-DAVPLAQSLIEGGIPIIEVTLRSSCALEAIELIAK 59
+ + ++ ++ ++P + + D L + ++G +P++ S L+++ L+ +
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ 97
Query: 60 NMPKMRVGAGTILNPTQLEQAQNRGAEFLISPGLTIKLLEHAKKKDMPLIPGVSSSSEVM 119
+P + V + T L RG L L+ + K +P PG+ + + +
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGL-----GELQELYLKGNELKTLP--PGLLTPTPKL 150
Query: 120 QALELGYSALKFFPAEYCGGVKLLN 144
+ L L + L PA G++ L+
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLD 175
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 28.1 bits (61), Expect = 0.77
Identities = 27/145 (18%), Positives = 63/145 (42%), Gaps = 8/145 (5%)
Query: 1 MQDKIIEVLQISPIVPVVVIENIK-DAVPLAQSLIEGGIPIIEVTLRSSCALEAIELIAK 59
+ + ++ ++ ++P + + D L + ++G +P++ S L+++ L+ +
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ 97
Query: 60 NMPKMRVGAGTILNPTQLEQAQNRGAEFLISPGLTIKLLEHAKKKDMPLIPGVSSSSEVM 119
+P + V + T L RG L L+ + K +P PG+ + + +
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGL-----GELQELYLKGNELKTLP--PGLLTPTPKL 150
Query: 120 QALELGYSALKFFPAEYCGGVKLLN 144
+ L L + L PA G++ L+
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLD 175
>pdb|1RK2|B Chain B, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1GQT|B Chain B, Activation Of Ribokinase By Monovalent Cations
pdb|1RKD| E. Coli Ribokinase Complexed With Ribose And Adp
pdb|1RK2|C Chain C, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1GQT|C Chain C, Activation Of Ribokinase By Monovalent Cations
pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|D Chain D, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RKA|A Chain A, The Apo Form Of E. Coli Ribokinase
pdb|1GQT|A Chain A, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|D Chain D, Activation Of Ribokinase By Monovalent Cations
pdb|1RKS|A Chain A, E. Coli Ribokinase In Complex With D-Ribose
Length = 309
Score = 27.7 bits (60), Expect = 1.0
Identities = 17/49 (34%), Positives = 25/49 (50%)
Query: 20 IENIKDAVPLAQSLIEGGIPIIEVTLRSSCALEAIELIAKNMPKMRVGA 68
+EN +DA AQ L E GI + +TL S ++ + +P RV A
Sbjct: 199 VENDEDAAKAAQVLHEKGIRTVLITLGSRGVWASVNGEGQRVPGFRVQA 247
>pdb|1QI4|A Chain A, Mutant (E219g) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 24.6 bits (52), Expect = 8.5
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 152 GVKFCPTGGISADNMRSYL--NLENVLCVGGSWLTPKNLIQNKEW 194
G +F G + + + S++ + +N CVGG W P N +W
Sbjct: 189 GFRFDFVRGYAPERVNSWMTDSADNSFCVGGLWKGPSE-YPNWDW 232
>pdb|1SMR|A Chain A, Renin (E.C.3.4.23.15) Complex With The Inhibitor Ch-66
Length = 335
Score = 24.6 bits (52), Expect = 8.5
Identities = 18/68 (26%), Positives = 34/68 (49%), Gaps = 1/68 (1%)
Query: 61 MPKMRVGAGTILNPTQLEQAQNRGAEFLISPGLTIKLLEHA-KKKDMPLIPGVSSSSEVM 119
M + VG+ T+L E + G+ F+ +P ++KL+ A K+ L V S S+V
Sbjct: 199 MKGVSVGSSTLLCEEGCEVVVDTGSSFISAPTSSLKLIMQALGAKEKRLHEYVVSCSQVP 258
Query: 120 QALELGYS 127
++ ++
Sbjct: 259 TLPDISFN 266
>pdb|1GU6|A Chain A, Structure Of The Periplasmic Cytochrome C Nitrite
Reductase From Escherichia Coli
pdb|1GU6|C Chain C, Structure Of The Periplasmic Cytochrome C Nitrite
Reductase From Escherichia Coli
pdb|1GU6|E Chain E, Structure Of The Periplasmic Cytochrome C Nitrite
Reductase From Escherichia Coli
pdb|1GU6|G Chain G, Structure Of The Periplasmic Cytochrome C Nitrite
Reductase From Escherichia Coli
Length = 452
Score = 24.6 bits (52), Expect = 8.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 137 CGGVKLLNAFNGPFKGVKFCPTGGISADNMRSY 169
CG + F+G K VKF G+ +NM Y
Sbjct: 183 CGQCHVEYYFDGKNKAVKFPWDDGMKVENMEQY 215
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.138 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,186,182
Number of Sequences: 13198
Number of extensions: 47796
Number of successful extensions: 111
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 106
Number of HSP's gapped (non-prelim): 14
length of query: 208
length of database: 2,899,336
effective HSP length: 84
effective length of query: 124
effective length of database: 1,790,704
effective search space: 222047296
effective search space used: 222047296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)