BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645714|ref|NP_207891.1| 6-phosphogluconate
dehydratase [Helicobacter pylori 26695]
(608 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin ... 28 3.9
pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A... 28 3.9
pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Ce... 27 6.6
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 27.7 bits (60), Expect = 3.9
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 12/107 (11%)
Query: 480 SNGMPELHKLTTNLGALQDMGYKVALVTDGRMSGASGKVPSAI-HLSPEGALNGA--IIK 536
+N +P L KL L +D K A S + P I +L +G + +++
Sbjct: 296 ANLIPPLVKL---LEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLE 352
Query: 537 IKDGDLIE--LDAPNNALNVLEKDFEKRGI----NPLFLETLENLEK 577
I D +IE LDA N L + E D E RG+ N F+E +EK
Sbjct: 353 IADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEK 399
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 27.7 bits (60), Expect = 3.9
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 12/107 (11%)
Query: 480 SNGMPELHKLTTNLGALQDMGYKVALVTDGRMSGASGKVPSAI-HLSPEGALNGA--IIK 536
+N +P L KL L +D K A S + P I +L +G + +++
Sbjct: 296 ANLIPPLVKL---LEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLE 352
Query: 537 IKDGDLIE--LDAPNNALNVLEKDFEKRGI----NPLFLETLENLEK 577
I D +IE LDA N L + E D E RG+ N F+E +EK
Sbjct: 353 IADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEK 399
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 26.9 bits (58), Expect = 6.6
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 534 IIKIKDGDLIE--LDAPNNALNVLEKDFEKRGI----NPLFLETLENLEK 577
+++I D +IE LDA N L + E D E RG+ N F+E +EK
Sbjct: 348 LLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEK 397
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.136 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,483,184
Number of Sequences: 13198
Number of extensions: 150189
Number of successful extensions: 404
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 404
Number of HSP's gapped (non-prelim): 3
length of query: 608
length of database: 2,899,336
effective HSP length: 94
effective length of query: 514
effective length of database: 1,658,724
effective search space: 852584136
effective search space used: 852584136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)