BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645715|ref|NP_207892.1| glucose-6-phosphate
dehydrogenase (g6pD) [Helicobacter pylori 26695]
(425 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DPG|A Chain A, Glucose 6-Phosphate Dehydrogenase From ... 212 6e-56
pdb|1H9A|A Chain A, Complex Of Active Mutant (Q365->c) Of G... 209 4e-55
pdb|1H93|A Chain A, Active Mutant (S215->c) Of Glucose 6-Ph... 209 4e-55
pdb|1E7Y|A Chain A, Active Site Mutant (D177->n) Of Glucose... 207 1e-54
pdb|2DPG| Complex Of Inactive Mutant (H240->n) Of Glucose... 207 2e-54
pdb|1QKI|H Chain H, X-Ray Structure Of Human Glucose 6-Phos... 175 1e-44
pdb|1DN1|A Chain A, Crystal Structure Of The Neuronal-Sec1S... 31 0.23
pdb|1BG1|A Chain A, Three-Dimensional Structure Of The Stat... 29 1.2
pdb|1A5Z| Lactate Dehydrogenase From Thermotoga Maritima ... 29 1.2
pdb|1M9I|A Chain A, Crystal Structure Of Phosphorylation-Mi... 28 2.6
pdb|1M5D|A Chain A, X-Ray Structure Of The Glur2 Ligand Bin... 27 5.7
pdb|1LBC|A Chain A, Crystal Structure Of Glur2 Ligand Bindi... 26 7.5
pdb|1FTK|A Chain A, Crystal Structure Of The Glur2 Ligand B... 26 7.5
pdb|1LBB|A Chain A, Crystal Structure Of The Glur2 Ligand B... 26 7.5
pdb|1M5B|A Chain A, X-Ray Structure Of The Glur2 Ligand Bin... 26 7.5
pdb|1LB8|A Chain A, Crystal Structure Of The Non-Desensitiz... 26 7.5
pdb|1DOF|A Chain A, The Crystal Structure Of Adenylosuccina... 26 9.7
pdb|1UCH| Deubiquitinating Enzyme Uch-L3 (Human) At 1.8 A... 26 9.7
>pdb|1DPG|A Chain A, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
pdb|1DPG|B Chain B, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
Length = 485
Score = 212 bits (540), Expect = 6e-56
Identities = 140/456 (30%), Positives = 225/456 (48%), Gaps = 51/456 (11%)
Query: 6 LVLFGATGDLAMRKLFVSLYEIYTHYGFKNDSRIIASGRKELSNEEFLTLL--CEKTQLH 63
+ FG TGDLA RKL+ S++ +Y + I+ + R+ L+++EF L+ C K
Sbjct: 8 VTFFGGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDCIKDFTD 67
Query: 64 SREKGREFLAHISYLCVRLDNPKDF----EELSKIATK---NKPLIFYFSISPSFFATTA 116
+ + F+ H SY + + + E + + A K + IFY S++P FF T A
Sbjct: 68 DQAQAEAFIEHFSYRAHDVTDAASYAVLKEAIEEAADKFDIDGNRIFYMSVAPRFFGTIA 127
Query: 117 QHLAKNAL--NHANTRLILEKPLGHDLKTCKEIFQSISVFFKEEQIFRIDHYLGKKGVQN 174
++L L + RL++EKP G T E+ + F + Q+FRIDHYLGK+ VQN
Sbjct: 128 KYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRIDHYLGKEMVQN 187
Query: 175 ILELRLNNPILNILW--DQISAVEICVYETLGVEERGEFYDKIGALRDMVQNHLLQVLSL 232
I LR NPI + W D I V++ + E LGVEER +YD GAL DM+QNH +Q++
Sbjct: 188 IAALRFGNPIFDAAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQNHTMQIVGW 247
Query: 233 IATDLPNNL--KDLRKEKIKVLKTLQ--PPKDFKKQVIRAQY--------QGYRDENKVH 280
+A + P + KD+R K L+ + K +RAQY + Y +E V
Sbjct: 248 LAMEKPESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVRAQYGAGDSADFKPYLEELDVP 307
Query: 281 KESQTETFVAIKAFLDTPKFKGVPFYLKHAKKMPHNQASVKIHFNAVNTLEFFLSQD--- 337
+S+ TF+A + D P+++GVPFY++ K++ Q V I F A T F Q+
Sbjct: 308 ADSKNNTFIAGELQFDLPRWEGVPFYVRSGKRLAAKQTRVDIVFKA-GTFNFGSEQEAQE 366
Query: 338 -------------KITLTLKDHQNPLILET---------HNKQEFLRPYAKLLYDAIQNN 375
++ L K ++ T +K+ PY ++++D + +
Sbjct: 367 AVLSIIIDPKGAIELKLNAKSVEDAFNTRTIDLGWTVSDEDKKNTPEPYERMIHDTMNGD 426
Query: 376 HNNFAHQLELEASWVFIDTLIEGFMNNATPLYSYES 411
+NFA + +W F+D + + + PL +Y+S
Sbjct: 427 GSNFADWNGVSIAWKFVDAISAVYTADKAPLETYKS 462
>pdb|1H9A|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From L. Mesenteroides With Coenzyme Nadp
pdb|1H9B|A Chain A, Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
pdb|1E77|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides With
Substrate
Length = 485
Score = 209 bits (533), Expect = 4e-55
Identities = 139/456 (30%), Positives = 225/456 (48%), Gaps = 51/456 (11%)
Query: 6 LVLFGATGDLAMRKLFVSLYEIYTHYGFKNDSRIIASGRKELSNEEFLTLLCE--KTQLH 63
+ FG TGDLA RKL+ S++ +Y + I+ + R+ L+++EF L+ + K
Sbjct: 8 VTFFGGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDSIKDFTD 67
Query: 64 SREKGREFLAHISYLCVRLDNPKDF----EELSKIATK---NKPLIFYFSISPSFFATTA 116
+ + F+ H SY + + + E + + A K + IFY S++P FF T A
Sbjct: 68 DQAQAEAFIEHFSYRAHDVTDAASYAVLKEAIEEAADKFDIDGNRIFYMSVAPRFFGTIA 127
Query: 117 QHLAKNAL--NHANTRLILEKPLGHDLKTCKEIFQSISVFFKEEQIFRIDHYLGKKGVQN 174
++L L + RL++EKP G T E+ + F + Q+FRIDHYLGK+ VQN
Sbjct: 128 KYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRIDHYLGKEMVQN 187
Query: 175 ILELRLNNPILNILW--DQISAVEICVYETLGVEERGEFYDKIGALRDMVQNHLLQVLSL 232
I LR NPI + W D I V++ + E LGVEER +YD GAL DM+QNH +Q++
Sbjct: 188 IAALRFGNPIFDAAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQNHTMQIVGW 247
Query: 233 IATDLPNNL--KDLRKEKIKVLKTLQ--PPKDFKKQVIRAQY--------QGYRDENKVH 280
+A + P + KD+R K L+ + K +RAQY + Y +E V
Sbjct: 248 LAMEKPESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVRAQYGAGDSADFKPYLEELDVP 307
Query: 281 KESQTETFVAIKAFLDTPKFKGVPFYLKHAKKMPHNQASVKIHFNAVNTLEFFLSQD--- 337
+S+ TF+A + D P+++GVPFY++ K++ Q V I F A T F Q+
Sbjct: 308 ADSKNNTFIAGELQFDLPRWEGVPFYVRSGKRLAAKQTRVDIVFKA-GTFNFGSEQEACE 366
Query: 338 -------------KITLTLKDHQNPLILET---------HNKQEFLRPYAKLLYDAIQNN 375
++ L K ++ T +K+ PY ++++D + +
Sbjct: 367 AVLSIIIDPKGAIELKLNAKSVEDAFNTRTIDLGWTVSDEDKKNTPEPYERMIHDTMNGD 426
Query: 376 HNNFAHQLELEASWVFIDTLIEGFMNNATPLYSYES 411
+NFA + +W F+D + + + PL +Y+S
Sbjct: 427 GSNFADWNGVSIAWKFVDAISAVYTADKAPLETYKS 462
>pdb|1H93|A Chain A, Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
pdb|1H94|A Chain A, Complex Of Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From L.Mesenteroides With Coenzyme Nad
Length = 485
Score = 209 bits (533), Expect = 4e-55
Identities = 139/456 (30%), Positives = 225/456 (48%), Gaps = 51/456 (11%)
Query: 6 LVLFGATGDLAMRKLFVSLYEIYTHYGFKNDSRIIASGRKELSNEEFLTLLCE--KTQLH 63
+ FG TGDLA RKL+ S++ +Y + I+ + R+ L+++EF L+ + K
Sbjct: 8 VTFFGGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDSIKDFTD 67
Query: 64 SREKGREFLAHISYLCVRLDNPKDF----EELSKIATK---NKPLIFYFSISPSFFATTA 116
+ + F+ H SY + + + E + + A K + IFY S++P FF T A
Sbjct: 68 DQAQAEAFIEHFSYRAHDVTDAASYAVLKEAIEEAADKFDIDGNRIFYMSVAPRFFGTIA 127
Query: 117 QHLAKNAL--NHANTRLILEKPLGHDLKTCKEIFQSISVFFKEEQIFRIDHYLGKKGVQN 174
++L L + RL++EKP G T E+ + F + Q+FRIDHYLGK+ VQN
Sbjct: 128 KYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRIDHYLGKEMVQN 187
Query: 175 ILELRLNNPILNILW--DQISAVEICVYETLGVEERGEFYDKIGALRDMVQNHLLQVLSL 232
I LR NPI + W D I V++ + E LGVEER +YD GAL DM+QNH +Q++
Sbjct: 188 IAALRFGNPIFDAAWNKDYIKNVQVTLCEVLGVEERAGYYDTAGALLDMIQNHTMQIVGW 247
Query: 233 IATDLPNNL--KDLRKEKIKVLKTLQ--PPKDFKKQVIRAQY--------QGYRDENKVH 280
+A + P + KD+R K L+ + K +RAQY + Y +E V
Sbjct: 248 LAMEKPESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVRAQYGAGDSADFKPYLEELDVP 307
Query: 281 KESQTETFVAIKAFLDTPKFKGVPFYLKHAKKMPHNQASVKIHFNAVNTLEFFLSQD--- 337
+S+ TF+A + D P+++GVPFY++ K++ Q V I F A T F Q+
Sbjct: 308 ADSKNNTFIAGELQFDLPRWEGVPFYVRSGKRLAAKQTRVDIVFKA-GTFNFGSEQEAQE 366
Query: 338 -------------KITLTLKDHQNPLILET---------HNKQEFLRPYAKLLYDAIQNN 375
++ L K ++ T +K+ PY ++++D + +
Sbjct: 367 AVLSIIIDPKGAIELKLNAKSVEDAFNTRTIDLGWTVSDEDKKNTPEPYERMIHDTMNGD 426
Query: 376 HNNFAHQLELEASWVFIDTLIEGFMNNATPLYSYES 411
+NFA + +W F+D + + + PL +Y+S
Sbjct: 427 GSNFADWNGVSIAWKFVDAISAVYTADKAPLETYKS 462
>pdb|1E7Y|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides Complexed
With Substrate And Nadph
pdb|1E7M|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
Length = 485
Score = 207 bits (528), Expect = 1e-54
Identities = 138/456 (30%), Positives = 225/456 (49%), Gaps = 51/456 (11%)
Query: 6 LVLFGATGDLAMRKLFVSLYEIYTHYGFKNDSRIIASGRKELSNEEFLTLLCE--KTQLH 63
+ FG TGDLA RKL+ S++ +Y + I+ + R+ L+++EF L+ + K
Sbjct: 8 VTFFGGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDSIKDFTD 67
Query: 64 SREKGREFLAHISYLCVRLDNPKDF----EELSKIATK---NKPLIFYFSISPSFFATTA 116
+ + F+ H SY + + + E + + A K + IFY S++P FF T A
Sbjct: 68 DQAQAEAFIEHFSYRAHDVTDAASYAVLKEAIEEAADKFDIDGNRIFYMSVAPRFFGTIA 127
Query: 117 QHLAKNAL--NHANTRLILEKPLGHDLKTCKEIFQSISVFFKEEQIFRIDHYLGKKGVQN 174
++L L + RL++EKP G T E+ + F + Q+FRI+HYLGK+ VQN
Sbjct: 128 KYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRINHYLGKEMVQN 187
Query: 175 ILELRLNNPILNILW--DQISAVEICVYETLGVEERGEFYDKIGALRDMVQNHLLQVLSL 232
I LR NPI + W D I V++ + E LGVEER +YD GAL DM+QNH +Q++
Sbjct: 188 IAALRFGNPIFDAAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQNHTMQIVGW 247
Query: 233 IATDLPNNL--KDLRKEKIKVLKTLQ--PPKDFKKQVIRAQY--------QGYRDENKVH 280
+A + P + KD+R K L+ + K +RAQY + Y +E V
Sbjct: 248 LAMEKPESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVRAQYGAGDSADFKPYLEELDVP 307
Query: 281 KESQTETFVAIKAFLDTPKFKGVPFYLKHAKKMPHNQASVKIHFNAVNTLEFFLSQD--- 337
+S+ TF+A + D P+++GVPFY++ K++ Q V I F A T F Q+
Sbjct: 308 ADSKNNTFIAGELQFDLPRWEGVPFYVRSGKRLAAKQTRVDIVFKA-GTFNFGSEQEAQE 366
Query: 338 -------------KITLTLKDHQNPLILET---------HNKQEFLRPYAKLLYDAIQNN 375
++ L K ++ T +K+ PY ++++D + +
Sbjct: 367 AVLSIIIDPKGAIELKLNAKSVEDAFNTRTIDLGWTVSDEDKKNTPEPYERMIHDTMNGD 426
Query: 376 HNNFAHQLELEASWVFIDTLIEGFMNNATPLYSYES 411
+NFA + +W F+D + + + PL +Y+S
Sbjct: 427 GSNFADWNGVSIAWKFVDAISAVYTADKAPLETYKS 462
>pdb|2DPG| Complex Of Inactive Mutant (H240->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides With Nadp+
Length = 485
Score = 207 bits (526), Expect = 2e-54
Identities = 138/456 (30%), Positives = 225/456 (49%), Gaps = 51/456 (11%)
Query: 6 LVLFGATGDLAMRKLFVSLYEIYTHYGFKNDSRIIASGRKELSNEEFLTLLCE--KTQLH 63
+ FG TGDLA RKL+ S++ +Y + I+ + R+ L+++EF L+ + K
Sbjct: 8 VTFFGGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDSIKDFTD 67
Query: 64 SREKGREFLAHISYLCVRLDNPKDF----EELSKIATK---NKPLIFYFSISPSFFATTA 116
+ + F+ H SY + + + E + + A K + IFY S++P FF T A
Sbjct: 68 DQAQAEAFIEHFSYRAHDVTDAASYAVLKEAIEEAADKFDIDGNRIFYMSVAPRFFGTIA 127
Query: 117 QHLAKNAL--NHANTRLILEKPLGHDLKTCKEIFQSISVFFKEEQIFRIDHYLGKKGVQN 174
++L L + RL++EKP G T E+ + F + Q+FRIDHYLGK+ VQN
Sbjct: 128 KYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRIDHYLGKEMVQN 187
Query: 175 ILELRLNNPILNILW--DQISAVEICVYETLGVEERGEFYDKIGALRDMVQNHLLQVLSL 232
I LR NPI + W D I V++ + E LGVEER +YD GAL DM+QN+ +Q++
Sbjct: 188 IAALRFGNPIFDAAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQNNTMQIVGW 247
Query: 233 IATDLPNNL--KDLRKEKIKVLKTLQ--PPKDFKKQVIRAQY--------QGYRDENKVH 280
+A + P + KD+R K L+ + K +RAQY + Y +E V
Sbjct: 248 LAMEKPESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVRAQYGAGDSADFKPYLEELDVP 307
Query: 281 KESQTETFVAIKAFLDTPKFKGVPFYLKHAKKMPHNQASVKIHFNAVNTLEFFLSQD--- 337
+S+ TF+A + D P+++GVPFY++ K++ Q V I F A T F Q+
Sbjct: 308 ADSKNNTFIAGELQFDLPRWEGVPFYVRSGKRLAAKQTRVDIVFKA-GTFNFGSEQEAQE 366
Query: 338 -------------KITLTLKDHQNPLILET---------HNKQEFLRPYAKLLYDAIQNN 375
++ L K ++ T +K+ PY ++++D + +
Sbjct: 367 AVLSIIIDPKGAIELKLNAKSVEDAFNTRTIDLGWTVSDEDKKNTPEPYERMIHDTMNGD 426
Query: 376 HNNFAHQLELEASWVFIDTLIEGFMNNATPLYSYES 411
+NFA + +W F+D + + + PL +Y+S
Sbjct: 427 GSNFADWNGVSIAWKFVDAISAVYTADKAPLETYKS 462
>pdb|1QKI|H Chain H, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|F Chain F, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|C Chain C, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|A Chain A, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|D Chain D, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|B Chain B, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|G Chain G, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|E Chain E, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
Length = 514
Score = 175 bits (443), Expect = 1e-44
Identities = 127/468 (27%), Positives = 222/468 (47%), Gaps = 61/468 (13%)
Query: 7 VLFGATGDLAMRKLFVSLYEIYTHYGFKNDSRIIASGRKELS-------NEEFLTLLCEK 59
++ GA+GDLA +K++ +++ ++ ++ I+ R L+ +E F K
Sbjct: 34 IIMGASGDLAKKKIYPTIWWLFRDGLLPENTFIVGYARSRLTVADIRKQSEPFF-----K 88
Query: 60 TQLHSREKGREFLAHISYLCVRLDNPKDFEELSKIAT-----KNKPLIFYFSISPSFFAT 114
+ K +F A SY+ + D+ ++ L+ +FY ++ P+ +
Sbjct: 89 ATPEEKLKLEDFFARNSYVAGQYDDAASYQRLNSHMNALHLGSQANRLFYLALPPTVYEA 148
Query: 115 TAQHLAKNALNHAN-TRLILEKPLGHDLKTCKEIFQSISVFFKEEQIFRIDHYLGKKGVQ 173
+++ ++ ++ R+I+EKP G DL++ + IS F+E+QI+RIDHYLGK+ VQ
Sbjct: 149 VTKNIHESCMSQIGWNRIIVEKPFGRDLQSSDRLSNHISSLFREDQIYRIDHYLGKEMVQ 208
Query: 174 NILELRLNNPILNILW--DQISAVEICVYETLGVEERGEFYDKIGALRDMVQNHLLQVLS 231
N++ LR N I +W D I+ V + E G E RG ++D+ G +RD++QNHLLQ+L
Sbjct: 209 NLMVLRFANRIFGPIWNRDNIACVILTFKEPFGTEGRGGYFDEFGIIRDVMQNHLLQMLC 268
Query: 232 LIATDLP--NNLKDLRKEKIKVLKTLQPPKDFKKQVIRAQY-----------QGYRDENK 278
L+A + P N D+R EK+KVLK + + V+ QY +GY D+
Sbjct: 269 LVAMEKPASTNSDDVRDEKVKVLKCISEVQ--ANNVVLGQYVGNPDGEGEATKGYLDDPT 326
Query: 279 VHKESQTETFVAIKAFLDTPKFKGVPFYLKHAKKMPHNQASVKIHFNAVNTLEFFLSQDK 338
V + S T TF A+ +++ ++ GVPF L+ K + +A V++ F+ V F +
Sbjct: 327 VPRGSTTATFAAVVLYVENERWDGVPFILRCGKALNERKAEVRLQFHDVAGDIFHQQCKR 386
Query: 339 ITLTLKDHQNPLI---LETHNKQEFLRP---------------------YAKLLYDAIQN 374
L ++ N + + T F P Y +L+ D
Sbjct: 387 NELVIRVQPNEAVYTKMMTKKPGMFFNPEESELDLTYGNRYKNVKLPDAYERLILDVFCG 446
Query: 375 NHNNFAHQLELEASW-VFIDTLIEGFMNNATPL-YSYESHHLNESEFL 420
+ +F EL +W +F L + + P+ Y Y S E++ L
Sbjct: 447 SQMHFVRSDELLEAWRIFTPLLHQIELEKPKPIPYIYGSRGPTEADEL 494
>pdb|1DN1|A Chain A, Crystal Structure Of The Neuronal-Sec1SYNTAXIN 1A COMPLEX
Length = 594
Score = 31.2 bits (69), Expect = 0.23
Identities = 24/86 (27%), Positives = 43/86 (49%), Gaps = 3/86 (3%)
Query: 141 LKTCKEIFQSISVFFKEEQIFRIDHYLGKKGVQNILELRLNNPILNILWDQISAVEICVY 200
+KT EI +I+ E Q++ +D + + + ++ NPIL L +QI+ + +
Sbjct: 127 IKTLTEI--NIAFLPYESQVYSLDSADSFQSFYSPHKAQMKNPILERLAEQIATLCATLK 184
Query: 201 ETLGVEERGEFYDKIGALRDMVQNHL 226
E V RGE+ D L ++Q+ L
Sbjct: 185 EYPAVRYRGEYKDN-ALLAQLIQDKL 209
>pdb|1BG1|A Chain A, Three-Dimensional Structure Of The Stat3b Homodimer Bound
To Dna
Length = 722
Score = 28.9 bits (63), Expect = 1.2
Identities = 31/154 (20%), Positives = 67/154 (43%), Gaps = 11/154 (7%)
Query: 116 AQHLAKNALNHANTRLILEKPLGHDLKTCKEIFQSISVFFKEEQIFRIDHYLGKKGVQNI 175
+Q A A ++ L+ LG + Q +V + + + RI +L + ++
Sbjct: 40 SQDWAYAASKESHATLVFHNLLGEIDQQYSRFLQESNVLY-QHNLRRIKQFLQSRYLEKP 98
Query: 176 LELRLNNPILNILWDQISAVEICVYETLGVEERGEFYDKIGALRDMVQNHLLQVLSLIAT 235
+E+ + LW++ ++ ++ G+ A+ Q L Q L
Sbjct: 99 MEIA--RIVARCLWEESRLLQTAA---TAAQQGGQANHPTAAVVTEKQQMLEQHLQ---- 149
Query: 236 DLPNNLKDLRKEKIKVLKTLQPPKDFKKQVIRAQ 269
D+ ++DL ++K+KV++ LQ DF + +++Q
Sbjct: 150 DVRKRVQDL-EQKMKVVENLQDDFDFNYKTLKSQ 182
>pdb|1A5Z| Lactate Dehydrogenase From Thermotoga Maritima (Tmldh)
Length = 319
Score = 28.9 bits (63), Expect = 1.2
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 17/74 (22%)
Query: 152 SVFFKEEQIFRIDHYL-----------------GKKGVQNILELRLNNPILNILWDQISA 194
S+FF E+++ + YL GK GV+ ILEL LN L S
Sbjct: 240 SIFFDEKRVLTLSVYLEDYLGVKDLCISVPVTLGKHGVERILELNLNEEELEAFRKSASI 299
Query: 195 VEICVYETLGVEER 208
++ + E E +
Sbjct: 300 LKNAINEITAEENK 313
>pdb|1M9I|A Chain A, Crystal Structure Of Phosphorylation-Mimicking Mutant
T356d Of Annexin Vi
Length = 672
Score = 27.7 bits (60), Expect = 2.6
Identities = 19/68 (27%), Positives = 31/68 (44%), Gaps = 6/68 (8%)
Query: 42 SGRKELSNEEFLTLLCEKTQLHSREKGREFLAHISY---LCVRLDNPKDFEELSKI---A 95
SG K F+T+LC ++ H R +EF+ +Y ++ + D + +
Sbjct: 536 SGDKTSLETRFMTILCTRSYPHLRRVFQEFIKMTNYDVEHTIKKEMSGDVRDAFVAIVQS 595
Query: 96 TKNKPLIF 103
KNKPL F
Sbjct: 596 VKNKPLFF 603
>pdb|1M5D|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j-
Y702f) In Complex With Br-Hibo At 1.73 A Resolution
pdb|1M5F|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
Length = 263
Score = 26.6 bits (57), Expect = 5.7
Identities = 20/72 (27%), Positives = 34/72 (46%), Gaps = 1/72 (1%)
Query: 75 ISYLCVRLDNPKDFEELSKIATKNKPLIFYFSISPSFFA-TTAQHLAKNALNHANTRLIL 133
I+Y + + K+F SKIA +K + S PS F TTA+ +A+ + +L
Sbjct: 133 IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAFLL 192
Query: 134 EKPLGHDLKTCK 145
E + ++ K
Sbjct: 193 ESTMNEYIEQRK 204
>pdb|1LBC|A Chain A, Crystal Structure Of Glur2 Ligand Binding Core
(S1s2j-N775s) In Complex With Cyclothiazide (Ctz) As
Well As Glutamate At 1.8 A Resolution
pdb|1LBC|B Chain B, Crystal Structure Of Glur2 Ligand Binding Core
(S1s2j-N775s) In Complex With Cyclothiazide (Ctz) As
Well As Glutamate At 1.8 A Resolution
pdb|1LBC|C Chain C, Crystal Structure Of Glur2 Ligand Binding Core
(S1s2j-N775s) In Complex With Cyclothiazide (Ctz) As
Well As Glutamate At 1.8 A Resolution
Length = 263
Score = 26.2 bits (56), Expect = 7.5
Identities = 20/72 (27%), Positives = 34/72 (46%), Gaps = 1/72 (1%)
Query: 75 ISYLCVRLDNPKDFEELSKIATKNKPLIFYFSISPSFFA-TTAQHLAKNALNHANTRLIL 133
I+Y + + K+F SKIA +K + S PS F TTA+ +A+ + +L
Sbjct: 133 IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLL 192
Query: 134 EKPLGHDLKTCK 145
E + ++ K
Sbjct: 193 ESTMNEYIEQRK 204
>pdb|1FTK|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2i)
In Complex With Kainate At 1.6 A Resolution
pdb|1GR2|A Chain A, Structure Of A Glutamate Receptor Ligand Binding Core
(Glur2) Complexed With Kainate
Length = 279
Score = 26.2 bits (56), Expect = 7.5
Identities = 20/72 (27%), Positives = 34/72 (46%), Gaps = 1/72 (1%)
Query: 75 ISYLCVRLDNPKDFEELSKIATKNKPLIFYFSISPSFFA-TTAQHLAKNALNHANTRLIL 133
I+Y + + K+F SKIA +K + S PS F TTA+ +A+ + +L
Sbjct: 149 IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLL 208
Query: 134 EKPLGHDLKTCK 145
E + ++ K
Sbjct: 209 ESTMNEYIEQRK 220
>pdb|1LBB|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Domain
Mutant (S1s2j-N754d) In Complex With Kainate At 2.1 A
Resolution
Length = 263
Score = 26.2 bits (56), Expect = 7.5
Identities = 20/72 (27%), Positives = 34/72 (46%), Gaps = 1/72 (1%)
Query: 75 ISYLCVRLDNPKDFEELSKIATKNKPLIFYFSISPSFFA-TTAQHLAKNALNHANTRLIL 133
I+Y + + K+F SKIA +K + S PS F TTA+ +A+ + +L
Sbjct: 133 IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLL 192
Query: 134 EKPLGHDLKTCK 145
E + ++ K
Sbjct: 193 ESTMNEYIEQRK 204
>pdb|1M5B|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5C|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Br-Hibo At 1.65 A Resolution
pdb|1M5E|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1FTJ|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTM|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTM|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTO|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1FTJ|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTO|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1FTL|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTL|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTM|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FW0|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Kainate At 2.0 A Resolution
Length = 263
Score = 26.2 bits (56), Expect = 7.5
Identities = 20/72 (27%), Positives = 34/72 (46%), Gaps = 1/72 (1%)
Query: 75 ISYLCVRLDNPKDFEELSKIATKNKPLIFYFSISPSFFA-TTAQHLAKNALNHANTRLIL 133
I+Y + + K+F SKIA +K + S PS F TTA+ +A+ + +L
Sbjct: 133 IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLL 192
Query: 134 EKPLGHDLKTCK 145
E + ++ K
Sbjct: 193 ESTMNEYIEQRK 204
>pdb|1LB8|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB8|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB9|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
pdb|1LB9|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
Length = 263
Score = 26.2 bits (56), Expect = 7.5
Identities = 20/72 (27%), Positives = 34/72 (46%), Gaps = 1/72 (1%)
Query: 75 ISYLCVRLDNPKDFEELSKIATKNKPLIFYFSISPSFFA-TTAQHLAKNALNHANTRLIL 133
I+Y + + K+F SKIA +K + S PS F TTA+ +A+ + +L
Sbjct: 133 IAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLL 192
Query: 134 EKPLGHDLKTCK 145
E + ++ K
Sbjct: 193 ESTMNEYIEQRK 204
>pdb|1DOF|A Chain A, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|D Chain D, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|B Chain B, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|C Chain C, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
Length = 403
Score = 25.8 bits (55), Expect = 9.7
Identities = 14/39 (35%), Positives = 20/39 (50%), Gaps = 1/39 (2%)
Query: 171 GVQNILELRLNNPILNILWDQISAVEICVYETLGVEERG 209
G + I L N I+N + ++ +C E LGV ERG
Sbjct: 11 GSEEIRRLFTNEAIINA-YLEVERALVCALEELGVAERG 48
>pdb|1UCH| Deubiquitinating Enzyme Uch-L3 (Human) At 1.8 Angstrom Resolution
Length = 230
Score = 25.8 bits (55), Expect = 9.7
Identities = 18/67 (26%), Positives = 31/67 (45%), Gaps = 17/67 (25%)
Query: 321 KIHFNAVNTLEFFLSQDKITLTLKDHQNPLILETHNKQEFLRPYAKLLYDAIQNNHNNFA 380
K+HF + +TL+ FL + ++++ + LE YDAI+ H A
Sbjct: 110 KMHFESGSTLKKFLEE---SVSMSPEERARYLEN--------------YDAIRVTHETSA 152
Query: 381 HQLELEA 387
H+ + EA
Sbjct: 153 HEGQTEA 159
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.138 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,373,487
Number of Sequences: 13198
Number of extensions: 94847
Number of successful extensions: 232
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 194
Number of HSP's gapped (non-prelim): 19
length of query: 425
length of database: 2,899,336
effective HSP length: 91
effective length of query: 334
effective length of database: 1,698,318
effective search space: 567238212
effective search space used: 567238212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)