BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644741|ref|NP_206911.1| hypothetical protein
[Helicobacter pylori 26695]
(276 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication In... 30 0.30
pdb|1I6Z|A Chain A, Bag Domain Of Bag1 Cochaperone 29 0.51
pdb|1E3P|A Chain A, Tungstate Derivative Of Streptomyces An... 25 7.4
pdb|1CGT| Cyclodextrin Glycosyltransferase (E.C.2.4.1.19) 25 9.7
pdb|5CGT| Maltotriose Complex Of Preconditioned Cyclodext... 25 9.7
pdb|3CGT| Structure Of Cyclodextrin Glycosyltransferase C... 25 9.7
pdb|4CGT| Deletion Mutant Delta(145-150), F151d Of Cyclod... 25 9.7
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 30.0 bits (66), Expect = 0.30
Identities = 30/108 (27%), Positives = 49/108 (44%), Gaps = 13/108 (12%)
Query: 97 LRFETLKVNEKRLKSASENFGLFTLLKKPSLERLERVI--ECEKRFLILDFLAFSCALGY 154
LR E + + K+ E G L+K E LER E +K I++F+A Y
Sbjct: 186 LRKEVIDYLLENTKNVREIEGKIKLIKLKGFEGLERKERKERDKLXQIVEFVANY----Y 241
Query: 155 SVKMEKFLLELVGRSVKEVRSIA-------ASFNALSLARQLERLEYS 195
+VK+E L + + E R IA S + + +AR +R +++
Sbjct: 242 AVKVEDILSDKRNKRTSEARKIAXYLCRKVCSASLIEIARAFKRKDHT 289
>pdb|1I6Z|A Chain A, Bag Domain Of Bag1 Cochaperone
Length = 135
Score = 29.3 bits (64), Expect = 0.51
Identities = 22/76 (28%), Positives = 36/76 (46%), Gaps = 14/76 (18%)
Query: 41 PISSKRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGARLPTFKAFENYWQKSLRFE 100
P LK+L DL++S I N+ Q L+KE SG + + + K L+ E
Sbjct: 14 PEEEVELKKLKDLEVSAEKIANHLQELNKE-------LSGIQ-------QGFLAKELQAE 59
Query: 101 TLKVNEKRLKSASENF 116
L ++++K+ E F
Sbjct: 60 ALCKLDRKVKATIEQF 75
>pdb|1E3P|A Chain A, Tungstate Derivative Of Streptomyces Antibioticus Pnpase
Gpsi Enzyme
Length = 757
Score = 25.4 bits (54), Expect = 7.4
Identities = 19/69 (27%), Positives = 34/69 (48%), Gaps = 6/69 (8%)
Query: 151 ALGYSVKMEKFLLE---LVGRSVKEVRSIAASFNALSLARQLERLEYSNTQI---TRFNL 204
AL S+ E+ + E + GR V ++R++AA A+ E TQI T N+
Sbjct: 340 ALTKSLVRERVIAEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNM 399
Query: 205 MGLKTLLNS 213
+ ++ L++
Sbjct: 400 LRMEQQLDT 408
>pdb|1CGT| Cyclodextrin Glycosyltransferase (E.C.2.4.1.19)
Length = 684
Score = 25.0 bits (53), Expect = 9.7
Identities = 18/52 (34%), Positives = 23/52 (43%), Gaps = 2/52 (3%)
Query: 45 KRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGARLPTFKAFENYWQKS 96
K L +LAD + ATI YF+ K + G R+ K WQKS
Sbjct: 192 KNLYDLADFNHNNATIDKYFKDAIK--LWLDMGVDGIRVDAVKHMPLGWQKS 241
>pdb|5CGT| Maltotriose Complex Of Preconditioned Cyclodextrin
Glycosyltransferase Mutant
pdb|1CGU| Cyclodextrin Glycosyltransferase (E.C.2.4.1.19) Mutant With Asp
229 Replaced By Ala (D229a)
pdb|7CGT| Rameb Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 25.0 bits (53), Expect = 9.7
Identities = 18/52 (34%), Positives = 23/52 (43%), Gaps = 2/52 (3%)
Query: 45 KRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGARLPTFKAFENYWQKS 96
K L +LAD + ATI YF+ K + G R+ K WQKS
Sbjct: 192 KNLYDLADFNHNNATIDKYFKDAIK--LWLDMGVDGIRVAAVKHMPLGWQKS 241
>pdb|3CGT| Structure Of Cyclodextrin Glycosyltransferase Complexed With Its
Main Product Beta-Cyclodextrin
pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltohexaose
pdb|9CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltopentaose
Length = 684
Score = 25.0 bits (53), Expect = 9.7
Identities = 18/52 (34%), Positives = 23/52 (43%), Gaps = 2/52 (3%)
Query: 45 KRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGARLPTFKAFENYWQKS 96
K L +LAD + ATI YF+ K + G R+ K WQKS
Sbjct: 192 KNLYDLADFNHNNATIDKYFKDAIK--LWLDMGVDGIRVDAVKHMPLGWQKS 241
>pdb|4CGT| Deletion Mutant Delta(145-150), F151d Of Cyclodextrin
Glycosyltransferase
Length = 678
Score = 25.0 bits (53), Expect = 9.7
Identities = 18/52 (34%), Positives = 23/52 (43%), Gaps = 2/52 (3%)
Query: 45 KRLKELADLKISCATIRNYFQILSKEGMLYQAHSSGARLPTFKAFENYWQKS 96
K L +LAD + ATI YF+ K + G R+ K WQKS
Sbjct: 186 KNLYDLADFNHNNATIDKYFKDAIK--LWLDMGVDGIRVDAVKHMPLGWQKS 235
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.324 0.139 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,358,126
Number of Sequences: 13198
Number of extensions: 48938
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 154
Number of HSP's gapped (non-prelim): 11
length of query: 276
length of database: 2,899,336
effective HSP length: 87
effective length of query: 189
effective length of database: 1,751,110
effective search space: 330959790
effective search space used: 330959790
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)