BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645717|ref|NP_207894.1| glucokinase (glk)
[Helicobacter pylori 26695]
(336 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FYU|A Chain A, Crystal Structure Of Erythrina Corallod... 26 5.6
pdb|1A66|A Chain A, Solution Nmr Structure Of The Core Nfat... 26 5.6
pdb|1IWE|A Chain A, Imp Complex Of The Recombinant Mouse-Mu... 26 7.3
pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus ... 25 9.6
>pdb|1FYU|A Chain A, Crystal Structure Of Erythrina Corallodendron Lectin In
Hexagonal Crystal Form
pdb|1FYU|B Chain B, Crystal Structure Of Erythrina Corallodendron Lectin In
Hexagonal Crystal Form
Length = 255
Score = 26.2 bits (56), Expect = 5.6
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 56 KESLKLHPIYG-SFAVATPIMGDFVQMTNNHWTFSI 90
+++ + H +Y SF + P D V T+NH TF+I
Sbjct: 220 RDAAETHDVYSWSFQASLPETNDAVIPTSNHNTFAI 255
>pdb|1A66|A Chain A, Solution Nmr Structure Of The Core Nfatc1DNA COMPLEX, 18
Structures
Length = 178
Score = 26.2 bits (56), Expect = 5.6
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 289 SPFRARFETKGRMGAFLASIPVHVVLKKTPGLDGAGIALENYL 331
S RAR+ET+G GA AS H +++ L+ + L+ ++
Sbjct: 23 SHHRARYETEGSRGAVKASAGGHPIVQLHGYLENEPLMLQLFI 65
>pdb|1IWE|A Chain A, Imp Complex Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase
pdb|1IWE|B Chain B, Imp Complex Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase
pdb|1LNY|A Chain A, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
Imp, Gdp And Mg
pdb|1LNY|B Chain B, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
Imp, Gdp And Mg
pdb|1LON|A Chain A, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
Imp, Gdp And Hadacidin
pdb|1LOO|A Chain A, Crystal Structure Of The Mouse-Muscle Adenylosuccinate
Synthetase Ligated With Gtp
pdb|1MEZ|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Samp, Gdp, So4(2-), And Mg(2+)
pdb|1MF0|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Amp, Gdp, Hpo4(2-), And Mg(2+)
pdb|1MF1|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Amp
pdb|1J4B|A Chain A, Recombinant Mouse-Muscle Adenylosuccinate Synthetase
Length = 457
Score = 25.8 bits (55), Expect = 7.3
Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 10/124 (8%)
Query: 75 MGDFVQMTNNHWTFSIETTRQCLTLKKLLVINDFVAQAYAISAMQENDLAQI-----GGI 129
+GD +Q + W + R+C L +++ + + A+ + D+ + GI
Sbjct: 318 IGDLLQNRGHEWGVTTGRKRRCGWLDLMILRYAHMVNGFTALALTKLDILDVLSEIKVGI 377
Query: 130 KCEINAPKAILGPGTGLGVSTLIQNSDGSLKVLPGEGGHVSFA-PFDDLEILVWQYARSK 188
++N + P ++Q + + LPG + A ++DL Y R
Sbjct: 378 SYKLNGKRIPYFPAN----QEILQKVEVEYETLPGWKADTTGARKWEDLPPQAQSYVRFV 433
Query: 189 FNHV 192
NH+
Sbjct: 434 ENHM 437
>pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus Jannaschii
Mevalonate Kinase
Length = 317
Score = 25.4 bits (54), Expect = 9.6
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 181 VWQYARSKFNHVSAE--RFLSGSGLVLIYEALSKRKGLEKVAKLSKAELTPQIISE 234
+ + +KF + E FL +++Y K+K E V +++K E +I E
Sbjct: 169 ILEIKNNKFRKIKGEFEEFLKNCKFLIVYAEKRKKKTAELVNEVAKIENKDEIFKE 224
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.140 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,954,544
Number of Sequences: 13198
Number of extensions: 78376
Number of successful extensions: 156
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 155
Number of HSP's gapped (non-prelim): 4
length of query: 336
length of database: 2,899,336
effective HSP length: 89
effective length of query: 247
effective length of database: 1,724,714
effective search space: 426004358
effective search space used: 426004358
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)