BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645719|ref|NP_207896.1| LPS biosynthesis protein
[Helicobacter pylori 26695]
(431 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1C7S|A Chain A, Beta-N-Acetylhexosaminidase Mutant D539... 30 0.69
pdb|1QBA| Bacterial Chitobiase, Glycosyl Hydrolase Family... 30 0.69
pdb|1C7T|A Chain A, Beta-N-Acetylhexosaminidase Mutant E540... 30 0.69
pdb|1AYY|C Chain C, Glycosylasparaginase >gi|3212474|pdb|1A... 26 9.9
pdb|1ERW| Human Thioredoxin Double Mutant With Cys 32 Rep... 26 9.9
pdb|1MJH|B Chain B, Structure-Based Assignment Of The Bioch... 26 9.9
pdb|1ERT| Human Thioredoxin (Reduced Form) >gi|2982059|pd... 26 9.9
pdb|9GAC|A Chain A, Precursor Of The T152c Mutant Glycosyla... 26 9.9
pdb|3TRX| Thioredoxin (Reduced Form) >gi|231098|pdb|4TRX|... 26 9.9
pdb|1AIU| Human Thioredoxin (D60n Mutant, Reduced Form) 26 9.9
pdb|9GAA|A Chain A, Precursor Of The T152a Mutant Glycosyla... 26 9.9
pdb|1ERV| Human Thioredoxin Mutant With Cys 73 Replaced B... 26 9.9
pdb|9GAF|C Chain C, Precursor Of The W11f Mutant Glycosylas... 26 9.9
>pdb|1C7S|A Chain A, Beta-N-Acetylhexosaminidase Mutant D539a Complexed With
Di- N-Acetyl-Beta-D-Glucosamine (Chitobiase)
Length = 858
Score = 29.6 bits (65), Expect = 0.69
Identities = 15/43 (34%), Positives = 18/43 (40%), Gaps = 1/43 (2%)
Query: 259 KPWDYPFGLKADLWLNALAKTPFMSDWIDSIARVEIGSEKWHR 301
KPW +GL A LW P M I A + + WHR
Sbjct: 697 KPWPGAYGLSAQLWSETQRTDPQMEYMIFPRA-LSVAERSWHR 738
>pdb|1QBA| Bacterial Chitobiase, Glycosyl Hydrolase Family 20
pdb|1QBB| Bacterial Chitobiase Complexed With Chitobiose (Dinag)
Length = 858
Score = 29.6 bits (65), Expect = 0.69
Identities = 15/43 (34%), Positives = 18/43 (40%), Gaps = 1/43 (2%)
Query: 259 KPWDYPFGLKADLWLNALAKTPFMSDWIDSIARVEIGSEKWHR 301
KPW +GL A LW P M I A + + WHR
Sbjct: 697 KPWPGAYGLSAQLWSETQRTDPQMEYMIFPRA-LSVAERSWHR 738
>pdb|1C7T|A Chain A, Beta-N-Acetylhexosaminidase Mutant E540d Complexed With
Di- N Acetyl-D-Glucosamine (Chitobiase)
Length = 858
Score = 29.6 bits (65), Expect = 0.69
Identities = 15/43 (34%), Positives = 18/43 (40%), Gaps = 1/43 (2%)
Query: 259 KPWDYPFGLKADLWLNALAKTPFMSDWIDSIARVEIGSEKWHR 301
KPW +GL A LW P M I A + + WHR
Sbjct: 697 KPWPGAYGLSAQLWSETQRTDPQMEYMIFPRA-LSVAERSWHR 738
>pdb|1AYY|C Chain C, Glycosylasparaginase
pdb|1AYY|A Chain A, Glycosylasparaginase
pdb|2GAC|A Chain A, T152c Mutant Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAC|C Chain C, T152c Mutant Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAW|A Chain A, Wild Type Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAW|C Chain C, Wild Type Glycosylasparaginase From Flavobacterium
Meningosepticum
Length = 151
Score = 25.8 bits (55), Expect = 9.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 19 AFAFDKNYLIPAGACLYSLLESIAKANKKIRYTLHALVVG 58
A D+NY I + AC+ + I+ A + T H ++VG
Sbjct: 67 ACIMDENYNIGSVACMEHIKNPISVARAVMEKTPHVMLVG 106
>pdb|1ERW| Human Thioredoxin Double Mutant With Cys 32 Replaced By Ser And
Cys 35 Replaced By Ser
Length = 105
Score = 25.8 bits (55), Expect = 9.9
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 109 LVKYFLADLFPKYSKMVWSDVDVIFCNEFSAD 140
++K F L KYS +++ +VDV C + +++
Sbjct: 37 MIKPFFHSLSEKYSNVIFLEVDVDDCQDVASE 68
>pdb|1MJH|B Chain B, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
pdb|1MJH|A Chain A, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
Length = 162
Score = 25.8 bits (55), Expect = 9.9
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 34 LYSLLESIAKANKKIRYTLHALVVGLNEEDKAKLNQITEPFKEFAALEVRDI 85
++SLL +A NK + + L L EE K K+ I + ++ +V+DI
Sbjct: 52 IFSLLLGVAGLNKSVEEFENELKNKLTEEAKNKMENIKKELED-VGFKVKDI 102
>pdb|1ERT| Human Thioredoxin (Reduced Form)
pdb|1AUC| Human Thioredoxin (Oxidized With Diamide)
pdb|1ERU| Human Thioredoxin (Oxidized Form)
Length = 105
Score = 25.8 bits (55), Expect = 9.9
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 109 LVKYFLADLFPKYSKMVWSDVDVIFCNEFSAD 140
++K F L KYS +++ +VDV C + +++
Sbjct: 37 MIKPFFHSLSEKYSNVIFLEVDVDDCQDVASE 68
>pdb|9GAC|A Chain A, Precursor Of The T152c Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAC|C Chain C, Precursor Of The T152c Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 25.8 bits (55), Expect = 9.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 19 AFAFDKNYLIPAGACLYSLLESIAKANKKIRYTLHALVVG 58
A D+NY I + AC+ + I+ A + T H ++VG
Sbjct: 67 ACIMDENYNIGSVACMEHIKNPISVARAVMEKTPHVMLVG 106
>pdb|3TRX| Thioredoxin (Reduced Form)
pdb|4TRX| Thioredoxin (Reduced Form)
Length = 105
Score = 25.8 bits (55), Expect = 9.9
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 109 LVKYFLADLFPKYSKMVWSDVDVIFCNEFSAD 140
++K F L KYS +++ +VDV C + +++
Sbjct: 37 MIKPFFHSLSEKYSNVIFLEVDVDDCQDVASE 68
>pdb|1AIU| Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 25.8 bits (55), Expect = 9.9
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 109 LVKYFLADLFPKYSKMVWSDVDVIFCNEFSAD 140
++K F L KYS +++ +VDV C + +++
Sbjct: 37 MIKPFFHSLSEKYSNVIFLEVDVNDCQDVASE 68
>pdb|9GAA|A Chain A, Precursor Of The T152a Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAA|C Chain C, Precursor Of The T152a Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 25.8 bits (55), Expect = 9.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 19 AFAFDKNYLIPAGACLYSLLESIAKANKKIRYTLHALVVG 58
A D+NY I + AC+ + I+ A + T H ++VG
Sbjct: 67 ACIMDENYNIGSVACMEHIKNPISVARAVMEKTPHVMLVG 106
>pdb|1ERV| Human Thioredoxin Mutant With Cys 73 Replaced By Ser (Reduced
Form)
Length = 105
Score = 25.8 bits (55), Expect = 9.9
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 109 LVKYFLADLFPKYSKMVWSDVDVIFCNEFSAD 140
++K F L KYS +++ +VDV C + +++
Sbjct: 37 MIKPFFHSLSEKYSNVIFLEVDVDDCQDVASE 68
>pdb|9GAF|C Chain C, Precursor Of The W11f Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAF|A Chain A, Precursor Of The W11f Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 25.8 bits (55), Expect = 9.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 19 AFAFDKNYLIPAGACLYSLLESIAKANKKIRYTLHALVVG 58
A D+NY I + AC+ + I+ A + T H ++VG
Sbjct: 67 ACIMDENYNIGSVACMEHIKNPISVARAVMEKTPHVMLVG 106
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.325 0.139 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,591,765
Number of Sequences: 13198
Number of extensions: 112365
Number of successful extensions: 290
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 13
length of query: 431
length of database: 2,899,336
effective HSP length: 91
effective length of query: 340
effective length of database: 1,698,318
effective search space: 577428120
effective search space used: 577428120
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)