BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645720|ref|NP_207897.1| hypothetical protein
[Helicobacter pylori 26695]
(435 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1GYD|B Chain B, Structure Of Cellvibrio Cellulosa Alpha... 28 1.5
pdb|1GYH|A Chain A, Structure Of D158a Cellvibrio Cellulosa... 28 1.5
pdb|1GYE|B Chain B, Structure Of Cellvibrio Cellulosa Alpha... 28 1.5
pdb|1CLQ|A Chain A, Crystal Structure Of A Replication Fork... 27 4.5
pdb|1IG9|A Chain A, Structure Of The Replicating Complex Of... 27 4.5
pdb|1H4W|A Chain A, Structure Of Human Trypsin Iv (Brain Tr... 27 4.5
>pdb|1GYD|B Chain B, Structure Of Cellvibrio Cellulosa Alpha-L-Arabinanase
Length = 315
Score = 28.5 bits (62), Expect = 1.5
Identities = 26/93 (27%), Positives = 39/93 (40%), Gaps = 15/93 (16%)
Query: 22 MKAASFVYDLKFMSFNFNLVAPANNPYWNSLTKMQGRLMPQIGVQLDKRQA--LMFGAWF 79
M SF LK N +L PA W+S+ K++ V +D QA A F
Sbjct: 139 MSFGSFWGGLKLFKLNDDLTRPAEPQEWHSIAKLER------SVLMDDSQAGSAQIEAPF 192
Query: 80 IQNLHTHYSYFPYSWGV------TMYYQYIGKN 106
I +Y F SWG+ + Y+ +G++
Sbjct: 193 ILRKGDYYYLFA-SWGLCCRKGDSTYHLVVGRS 224
>pdb|1GYH|A Chain A, Structure Of D158a Cellvibrio Cellulosa
Alpha-L-Arabinanase Mutant
pdb|1GYH|B Chain B, Structure Of D158a Cellvibrio Cellulosa
Alpha-L-Arabinanase Mutant
pdb|1GYH|C Chain C, Structure Of D158a Cellvibrio Cellulosa
Alpha-L-Arabinanase Mutant
pdb|1GYH|D Chain D, Structure Of D158a Cellvibrio Cellulosa
Alpha-L-Arabinanase Mutant
pdb|1GYH|E Chain E, Structure Of D158a Cellvibrio Cellulosa
Alpha-L-Arabinanase Mutant
pdb|1GYH|F Chain F, Structure Of D158a Cellvibrio Cellulosa
Alpha-L-Arabinanase Mutant
Length = 318
Score = 28.5 bits (62), Expect = 1.5
Identities = 26/93 (27%), Positives = 39/93 (40%), Gaps = 15/93 (16%)
Query: 22 MKAASFVYDLKFMSFNFNLVAPANNPYWNSLTKMQGRLMPQIGVQLDKRQA--LMFGAWF 79
M SF LK N +L PA W+S+ K++ V +D QA A F
Sbjct: 142 MSFGSFWGGLKLFKLNDDLTRPAEPQEWHSIAKLER------SVLMDDSQAGSAQIEAPF 195
Query: 80 IQNLHTHYSYFPYSWGV------TMYYQYIGKN 106
I +Y F SWG+ + Y+ +G++
Sbjct: 196 ILRKGDYYYLFA-SWGLCCRKGDSTYHLVVGRS 227
>pdb|1GYE|B Chain B, Structure Of Cellvibrio Cellulosa Alpha-L-Arabinanase
Complexed With Arabinohexaose
Length = 315
Score = 28.5 bits (62), Expect = 1.5
Identities = 26/93 (27%), Positives = 39/93 (40%), Gaps = 15/93 (16%)
Query: 22 MKAASFVYDLKFMSFNFNLVAPANNPYWNSLTKMQGRLMPQIGVQLDKRQA--LMFGAWF 79
M SF LK N +L PA W+S+ K++ V +D QA A F
Sbjct: 140 MSFGSFWGGLKLFKLNDDLTRPAEPQEWHSIAKLER------SVLMDDSQAGSAQIEAPF 193
Query: 80 IQNLHTHYSYFPYSWGV------TMYYQYIGKN 106
I +Y F SWG+ + Y+ +G++
Sbjct: 194 ILRKGDYYYLFA-SWGLCCRKGDSTYHLVVGRS 225
>pdb|1CLQ|A Chain A, Crystal Structure Of A Replication Fork Dna Polymerase
Editing Complex At 2.7 A Resolution
pdb|1WAJ| Dna Polymerase From Bacteriophage Rb69
pdb|1WAF|A Chain A, Dna Polymerase From Bacteriophage Rb69
pdb|1WAF|B Chain B, Dna Polymerase From Bacteriophage Rb69
pdb|1IH7|A Chain A, High-Resolution Structure Of Apo Rb69 Dna Polymerase
Length = 903
Score = 26.9 bits (58), Expect = 4.5
Identities = 18/52 (34%), Positives = 23/52 (43%), Gaps = 1/52 (1%)
Query: 322 EFYAQAQYKGFGIFNRYYFSNKPQMHFYATYGQSLYTGLPWYRAPN-FDMIG 372
EFY + G IF RY SN + Y SL+ P +A FD+ G
Sbjct: 3 EFYLTVEQIGDSIFERYIDSNGRERTREVEYKPSLFAHCPESQATKYFDIYG 54
>pdb|1IG9|A Chain A, Structure Of The Replicating Complex Of A Pol Alpha Family
Dna Polymerase
Length = 903
Score = 26.9 bits (58), Expect = 4.5
Identities = 18/52 (34%), Positives = 23/52 (43%), Gaps = 1/52 (1%)
Query: 322 EFYAQAQYKGFGIFNRYYFSNKPQMHFYATYGQSLYTGLPWYRAPN-FDMIG 372
EFY + G IF RY SN + Y SL+ P +A FD+ G
Sbjct: 3 EFYLTVEQIGDSIFERYIDSNGRERTREVEYKPSLFAHCPESQATKYFDIYG 54
>pdb|1H4W|A Chain A, Structure Of Human Trypsin Iv (Brain Trypsin)
Length = 224
Score = 26.9 bits (58), Expect = 4.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 157 NGWFEGVVDWYGGRNWNNQP 176
NG +GVV W G W N+P
Sbjct: 184 NGQLQGVVSWGHGCAWKNRP 203
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.325 0.143 0.475
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,114,919
Number of Sequences: 13198
Number of extensions: 153309
Number of successful extensions: 359
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 353
Number of HSP's gapped (non-prelim): 11
length of query: 435
length of database: 2,899,336
effective HSP length: 91
effective length of query: 344
effective length of database: 1,698,318
effective search space: 584221392
effective search space used: 584221392
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)