BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645723|ref|NP_207900.1| pyruvate ferredoxin
oxidoreductase, delta subunit [Helicobacter pylori 26695]
(130 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1HFE|L Chain L, 1.6 A Resolution Structure Of The Fe-On... 41 5e-05
pdb|1DUR|A Chain A, Replacement For 1fdx 2(4fe4s) Ferredoxi... 39 2e-04
pdb|1FCA| Ferredoxin 39 2e-04
pdb|1KEK|A Chain A, Crystal Structure Of The Free Radical I... 38 3e-04
pdb|2FDN| 2[4fe-4s] Ferredoxin From Clostridium Acidi-Uri... 38 4e-04
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) F... 35 0.004
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) F... 35 0.004
pdb|1CLF| Clostridium Pasteurianum Ferredoxin 34 0.006
pdb|1KQF|B Chain B, Formate Dehydrogenase N From E. Coli >g... 32 0.023
pdb|1BLU| Structure Of The 2[4fe-4s] Ferredoxin From Chro... 31 0.040
pdb|1XER| Structure Of Ferredoxin 30 0.068
pdb|1ROF| Nmr Study Of 4fe-4s Ferredoxin Of Thermotoga Ma... 28 0.26
pdb|1BQX|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c V... 28 0.44
pdb|1H98|A Chain A, New Insights Into Thermostability Of Ba... 27 0.75
pdb|1FXD| Ferredoxin Ii >gi|6137634|pdb|1F2G| The Nmr So... 27 0.98
pdb|1D8C|A Chain A, Malate Synthase G Complexed With Magnes... 26 1.3
pdb|1JB0|C Chain C, Crystal Structure Of Photosystem I: A P... 26 1.7
pdb|1BC6| 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, ... 25 2.9
pdb|1BD6| 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, ... 25 2.9
pdb|1GPI|A Chain A, Cellobiohydrolase Cel7d (Cbh 58) From P... 25 3.7
pdb|1FEH|A Chain A, Fe-Only Hydrogenase From Clostridium Pa... 24 4.9
pdb|1QJ2|A Chain A, Co Dehydrogenase From Oligotropha Carbo... 24 4.9
pdb|1JNR|B Chain B, Structure Of Adenylylsulfate Reductase ... 24 4.9
pdb|1KF6|B Chain B, E. Coli Quinol-Fumarate Reductase With ... 24 4.9
pdb|1EHA|A Chain A, Crystal Structure Of Glycosyltrehalose ... 24 4.9
pdb|1K0T|A Chain A, Nmr Solution Structure Of Unbound, Oxid... 24 4.9
pdb|1FUI|A Chain A, L-Fucose Isomerase From Escherichia Col... 24 4.9
pdb|1EH9|A Chain A, Crystal Structure Of Sulfolobus Solfata... 24 4.9
pdb|1GAO|A Chain A, Crystal Structure Of The L44s Mutant Of... 24 4.9
pdb|1PNF| Pngase F Complex With Di-N-Acetylchitobiose >gi... 23 8.3
pdb|1JI1|A Chain A, Crystal Structure Analysis Of Thermoact... 23 8.3
pdb|1PGS| Peptide-N(4)-(N-Acetyl-Beta-D-Glucosaminyl) Asp... 23 8.3
>pdb|1HFE|L Chain L, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase From
Desulfovibrio Desulfuricans
pdb|1HFE|M Chain M, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase From
Desulfovibrio Desulfuricans
Length = 421
Score = 40.8 bits (94), Expect = 5e-05
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 58 CINCFNCWVYCPDAAILSREGKLKGVDY-SHCKGCGVCVDVCPTN 101
CI C C YCP AAI G+ + + C CG C+ CP N
Sbjct: 35 CIGCDTCSQYCPTAAIFGEMGEPHSIPHIEACINCGQCLTHCPEN 79
Score = 28.1 bits (61), Expect = 0.34
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 34 TEQSYFTTSVAHWRVAKP--VHNNNICINCFNCWVYCPDAAILSREGKLKGVDYSHCKGC 91
T Y T+ + +P + + CINC C +CP+ AI + + V+ G
Sbjct: 40 TCSQYCPTAAIFGEMGEPHSIPHIEACINCGQCLTHCPENAIYEAQSWVPEVEKKLKDGK 99
Query: 92 GVCV 95
C+
Sbjct: 100 VKCI 103
Score = 26.9 bits (58), Expect = 0.75
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
Query: 83 VDYSHCKGCGVCVDVCPT--------NPKSLWMFEEQIEPATALTQWPQ 123
+D + C GC C CPT P S+ E I LT P+
Sbjct: 30 IDEAKCIGCDTCSQYCPTAAIFGEMGEPHSIPHIEACINCGQCLTHCPE 78
>pdb|1DUR|A Chain A, Replacement For 1fdx 2(4fe4s) Ferredoxin From (Now)
Peptostreptococcus Asaccharolyticus
Length = 55
Score = 38.9 bits (89), Expect = 2e-04
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 55 NNICINCFNCWVYCPDAAILSREGKLKGVDYSHCKGCGVCVDVCP 99
N+ CI C C CP I +EG + +D C CG C VCP
Sbjct: 5 NDSCIACGACKPECPVNCI--QEGSIYAIDADSCIDCGSCASVCP 47
>pdb|1FCA| Ferredoxin
Length = 55
Score = 38.5 bits (88), Expect = 2e-04
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 55 NNICINCFNCWVYCPDAAILSREGKLKGVDYSHCKGCGVCVDVCPTN 101
N CI+C C CP AI S+ G +D C CG C VCP +
Sbjct: 5 NEACISCGACEPECPVDAI-SQGGSRYVIDADTCIDCGACAGVCPVD 50
>pdb|1KEK|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|1KEK|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|1B0P|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|1B0P|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2PDA|A Chain A, Crystal Structure Of The Complex Between Pyruvate-
Ferredoxin Oxidoreductase From Desulfovibrio Africanus
And Pyruvate.
pdb|2PDA|B Chain B, Crystal Structure Of The Complex Between Pyruvate-
Ferredoxin Oxidoreductase From Desulfovibrio Africanus
And Pyruvate
Length = 1231
Score = 38.1 bits (87), Expect = 3e-04
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 26/76 (34%)
Query: 58 CINCFNCWVYCPDAAIL--------------------SREGKLKGVDYS------HCKGC 91
CI C C CP +AIL ++ +LKG + C GC
Sbjct: 688 CIQCNQCAFVCPHSAILPVLAKEEELVGAPANFTALEAKGKELKGYKFRIQINTLDCMGC 747
Query: 92 GVCVDVCPTNPKSLWM 107
G C D+CP K+L M
Sbjct: 748 GNCADICPPKEKALVM 763
>pdb|2FDN| 2[4fe-4s] Ferredoxin From Clostridium Acidi-Urici
pdb|1FDN| Ferredoxin
Length = 55
Score = 37.7 bits (86), Expect = 4e-04
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 55 NNICINCFNCWVYCPDAAILSREGKLKGVDYSHCKGCGVCVDVCPTN 101
N CI+C C CP AI S + + +D C CG C VCP +
Sbjct: 5 NEACISCGACEPECPVNAISSGDDRYV-IDADTCIDCGACAGVCPVD 50
>pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And
5-Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And
5-Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And
5-Fluorouracil
pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And
5-Fluorouracil
Length = 1025
Score = 34.7 bits (78), Expect = 0.004
Identities = 19/52 (36%), Positives = 25/52 (47%), Gaps = 5/52 (9%)
Query: 52 VHNNNICINCFNCWVYCPD----AAILSREGKLKGVDYSHCKGCGVCVDVCP 99
V + +CINC C++ C D A E L V C GC +C+ VCP
Sbjct: 947 VIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVT-DTCTGCTLCLSVCP 997
>pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
Length = 1025
Score = 34.7 bits (78), Expect = 0.004
Identities = 19/52 (36%), Positives = 25/52 (47%), Gaps = 5/52 (9%)
Query: 52 VHNNNICINCFNCWVYCPD----AAILSREGKLKGVDYSHCKGCGVCVDVCP 99
V + +CINC C++ C D A E L V C GC +C+ VCP
Sbjct: 947 VIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVT-DTCTGCTLCLSVCP 997
>pdb|1CLF| Clostridium Pasteurianum Ferredoxin
Length = 55
Score = 33.9 bits (76), Expect = 0.006
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 58 CINCFNCWVYCPDAAILSREGKLKGVDYSHCKGCGVCVDVCP 99
C++C C CP AI S+ + +D C CG C +VCP
Sbjct: 8 CVSCGACASECPVNAI-SQGDSIFVIDADTCIDCGNCANVCP 48
Score = 24.3 bits (51), Expect = 4.9
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 88 CKGCGVCVDVCPTN 101
C CG C CP N
Sbjct: 8 CVSCGACASECPVN 21
>pdb|1KQF|B Chain B, Formate Dehydrogenase N From E. Coli
pdb|1KQG|B Chain B, Formate Dehydrogenase N From E. Coli
Length = 294
Score = 32.0 bits (71), Expect = 0.023
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 58 CINCFN--CWVYCPDA-AILSREGKLKGVDYSHCKGCGVCVDVCPTN 101
C++C + C CP A AI+ + +C GCG C+ CP N
Sbjct: 100 CMHCEDPGCLKACPSAGAIIQYANGIVDFQSENCIGCGYCIAGCPFN 146
>pdb|1BLU| Structure Of The 2[4fe-4s] Ferredoxin From Chromatium Vinosum
Length = 82
Score = 31.2 bits (69), Expect = 0.040
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 58 CINCFNCWVYCPDAAILSREGKLKGVDYSHCKGC------GVCVDVCPTN 101
CINC C CP+ AI S+ + ++ S C C CV+VCP +
Sbjct: 8 CINCDVCEPECPNGAI-SQGDETYVIEPSLCTECVGHYETSQCVEVCPVD 56
>pdb|1XER| Structure Of Ferredoxin
Length = 103
Score = 30.4 bits (67), Expect = 0.068
Identities = 11/29 (37%), Positives = 16/29 (54%)
Query: 73 ILSREGKLKGVDYSHCKGCGVCVDVCPTN 101
+L G + GVD+ C G C++ CP N
Sbjct: 30 VLGIHGTIVGVDFDLCIADGSCINACPVN 58
Score = 24.3 bits (51), Expect = 4.9
Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 49 AKPVHNNNICINCFNCWVYCPDAAI 73
A PV N CI C C CP AAI
Sbjct: 75 ADPV-NEQACIFCMACVNVCPVAAI 98
>pdb|1ROF| Nmr Study Of 4fe-4s Ferredoxin Of Thermotoga Maritima
pdb|1VJW| Structure Of Oxidoreductase (Nadp+(A),Ferredoxin(A))
Length = 60
Score = 28.5 bits (62), Expect = 0.26
Identities = 10/17 (58%), Positives = 12/17 (69%)
Query: 83 VDYSHCKGCGVCVDVCP 99
VD C GCGVC ++CP
Sbjct: 5 VDADACIGCGVCENLCP 21
Score = 28.1 bits (61), Expect = 0.34
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 58 CINCFNCWVYCPDAAILSREGKLKGVDYSHCKGCGV-CVDVCPTNPKSL 105
CI C C CPD L +GK K + C D CPT S+
Sbjct: 10 CIGCGVCENLCPDVFQLGDDGKAKVLQPETDLPCAKDAADSCPTGAISV 58
>pdb|1BQX|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c Variant Of Bacillus
Schlegelii Fe7s8 Ferredoxin
pdb|1BWE|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c Variant Of Bacillus
Schlegelii Fe7s8 Ferredoxin
Length = 77
Score = 27.7 bits (60), Expect = 0.44
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 61 CFNCWVYCPDAAILSREGKLKGVDYSHCKGCGVCVDVCPTN 101
C +C CP I E + +D C CG C VCP +
Sbjct: 13 CASCVEVCPVDCIHEGEDQYY-IDPDVCIDCGACEAVCPVS 52
Score = 23.5 bits (49), Expect = 8.3
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 56 NICINCFNCWVYCPDAAI 73
++CI+C C CP +AI
Sbjct: 37 DVCIDCGACEAVCPVSAI 54
>pdb|1H98|A Chain A, New Insights Into Thermostability Of Bacterial
Ferredoxins: High Resolution Crystal Structure Of The
Seven-Iron Ferredoxin From Thermus Thermophilus
Length = 78
Score = 26.9 bits (58), Expect = 0.75
Identities = 22/78 (28%), Positives = 28/78 (35%), Gaps = 14/78 (17%)
Query: 57 ICINCF-----NCWVYCPDAAILSREGKLKGVDYSHCKGCGVCVDVCPTNPKSLWMFEEQ 111
IC C +C CP I G + C CG CV CP N ++ E+
Sbjct: 4 ICEPCIGVKDQSCVEVCPVECIYDG-GDQFYIHPEECIDCGACVPACPVNA----IYPEE 58
Query: 112 IEPATALTQWPQKQEKKK 129
P QW EK +
Sbjct: 59 DVP----EQWKSYIEKNR 72
>pdb|1FXD| Ferredoxin Ii
pdb|1F2G| The Nmr Solution Structure Of The 3fe Ferredoxin Ii From
Desulfovibrio Gigas, 15 Structures
Length = 58
Score = 26.6 bits (57), Expect = 0.98
Identities = 10/28 (35%), Positives = 15/28 (52%)
Query: 51 PVHNNNICINCFNCWVYCPDAAILSREG 78
P+ N+ C+ C C CPD ++ EG
Sbjct: 1 PIEVNDDCMACEACVEICPDVFEMNEEG 28
Score = 23.5 bits (49), Expect = 8.3
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 88 CKGCGVCVDVCP 99
C C CV++CP
Sbjct: 8 CMACEACVEICP 19
>pdb|1D8C|A Chain A, Malate Synthase G Complexed With Magnesium And Glyoxylate
Length = 723
Score = 26.2 bits (56), Expect = 1.3
Identities = 10/18 (55%), Positives = 13/18 (71%)
Query: 17 EKNAQSEMEKHNDERHYT 34
EKN + + K ND+RHYT
Sbjct: 303 EKNGRQIVRKLNDDRHYT 320
>pdb|1JB0|C Chain C, Crystal Structure Of Photosystem I: A Photosynthetic
Reaction Center And Core Antenna System From
Cyanobacteria
Length = 80
Score = 25.8 bits (55), Expect = 1.7
Identities = 9/17 (52%), Positives = 10/17 (57%)
Query: 85 YSHCKGCGVCVDVCPTN 101
Y C GC CV CPT+
Sbjct: 7 YDTCIGCTQCVRACPTD 23
Score = 25.4 bits (54), Expect = 2.2
Identities = 15/58 (25%), Positives = 24/58 (40%), Gaps = 7/58 (12%)
Query: 58 CINCFNCWVYCPDAAILS------REGKLKGVDYSH-CKGCGVCVDVCPTNPKSLWMF 108
CI C C CP + + G++ + C GC C CPT+ S+ ++
Sbjct: 10 CIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRVY 67
>pdb|1BC6| 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, 20 Structures
Length = 77
Score = 25.0 bits (53), Expect = 2.9
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 63 NCWVYCPDAAILSREGKLKGVDYSHCKGCGVCVDVCPTN 101
+C CP I E + +D C CG C VCP +
Sbjct: 15 SCVEVCPVDCIHEGEDQYY-IDPDVCIDCGACEAVCPVS 52
Score = 23.5 bits (49), Expect = 8.3
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 56 NICINCFNCWVYCPDAAI 73
++CI+C C CP +AI
Sbjct: 37 DVCIDCGACEAVCPVSAI 54
>pdb|1BD6| 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, Minimized Average
Structure
Length = 77
Score = 25.0 bits (53), Expect = 2.9
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 63 NCWVYCPDAAILSREGKLKGVDYSHCKGCGVCVDVCPTN 101
+C CP I E + +D C CG C VCP +
Sbjct: 15 SCVEVCPVDCIHEGEDQYY-IDPDVCIDCGACEAVCPVS 52
Score = 23.5 bits (49), Expect = 8.3
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 56 NICINCFNCWVYCPDAAI 73
++CI+C C CP +AI
Sbjct: 37 DVCIDCGACEAVCPVSAI 54
>pdb|1GPI|A Chain A, Cellobiohydrolase Cel7d (Cbh 58) From Phanerochaete
Chrysosporium. Catalytic Module At 1.32 Ang Resolution
Length = 431
Score = 24.6 bits (52), Expect = 3.7
Identities = 17/51 (33%), Positives = 23/51 (44%), Gaps = 7/51 (13%)
Query: 44 AHWRVAKPVHNNNICINCF--NCW--VYCPDAAILSREGKLKGVDYSHCKG 90
++WR VH+ + NC+ N W CPD + L G DYS G
Sbjct: 36 SNWRW---VHSTSGYTNCYTGNEWDTSLCPDGKTCAANCALDGADYSGTYG 83
>pdb|1FEH|A Chain A, Fe-Only Hydrogenase From Clostridium Pasteurianum
pdb|1C4A|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
Pasteurianum
pdb|1C4C|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
Pasteurianum
Length = 574
Score = 24.3 bits (51), Expect = 4.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 83 VDYSHCKGCGVCVDVCPTNPKSLWM 107
VD + C CG CV+ C N ++ M
Sbjct: 142 VDRTKCLLCGRCVNACGKNTETYAM 166
>pdb|1QJ2|A Chain A, Co Dehydrogenase From Oligotropha Carboxidovorans
pdb|1QJ2|G Chain G, Co Dehydrogenase From Oligotropha Carboxidovorans
Length = 166
Score = 24.3 bits (51), Expect = 4.9
Identities = 15/38 (39%), Positives = 18/38 (46%), Gaps = 2/38 (5%)
Query: 82 GVDYSHCKGCGVCVDVCPTNPKSLWMFEEQIEPATALT 119
G D SHC C VD+ + KS MF Q A+ T
Sbjct: 41 GCDTSHCGAC--TVDLDGMSVKSCTMFAVQANGASITT 76
>pdb|1JNR|B Chain B, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNR|D Chain D, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|B Chain B, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|D Chain D, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
Length = 150
Score = 24.3 bits (51), Expect = 4.9
Identities = 14/39 (35%), Positives = 20/39 (50%), Gaps = 6/39 (15%)
Query: 56 NICINCFNCWVYCPDAAILSREGKLKG-VDYSHCKGCGV 93
++C C++C CP AI ++G VDYS G V
Sbjct: 45 DMCWECYSCVKMCPQGAI-----DVRGYVDYSPLGGACV 78
>pdb|1KF6|B Chain B, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KF6|N Chain N, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1L0V|B Chain B, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1L0V|N Chain N, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1KFY|B Chain B, Quinol-Fumarate Reductase With Quinol Inhibitor 2-[1-(4-
Chloro-Phenyl)-Ethyl]-4,6-Dinitro-Phenol
pdb|1KFY|N Chain N, Quinol-Fumarate Reductase With Quinol Inhibitor 2-[1-(4-
Chloro-Phenyl)-Ethyl]-4,6-Dinitro-Phenol
Length = 243
Score = 24.3 bits (51), Expect = 4.9
Identities = 26/101 (25%), Positives = 38/101 (36%), Gaps = 36/101 (35%)
Query: 53 HNNNICINCFNCWVYCPD----------AAIL--------SRE-GKLKGVDYSH------ 87
H + CINC C+ CP AAI SR+ GK + + +
Sbjct: 143 HQFSGCINCGLCYAACPQFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVW 202
Query: 88 -CKGCGVCVDVCPTNPKSLWMFEEQIEPATALTQWPQKQEK 127
C G C +VCP + ++PA A+ Q + K
Sbjct: 203 SCTFVGYCSEVCP----------KHVDPAAAIQQGKVESSK 233
Score = 23.5 bits (49), Expect = 8.3
Identities = 7/15 (46%), Positives = 9/15 (59%)
Query: 85 YSHCKGCGVCVDVCP 99
+S C CG+C CP
Sbjct: 145 FSGCINCGLCYAACP 159
>pdb|1EHA|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
From Sulfolobus Solfataricus
Length = 558
Score = 24.3 bits (51), Expect = 4.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 77 EGKLKGVDYSHCKGCGVCVDV 97
EG K VD +H KG GV +DV
Sbjct: 168 EGFRKLVDEAHKKGLGVILDV 188
>pdb|1K0T|A Chain A, Nmr Solution Structure Of Unbound, Oxidized Photosystem I
Subunit Psac, Containing [4fe-4s] Clusters Fa And Fb
Length = 80
Score = 24.3 bits (51), Expect = 4.9
Identities = 15/58 (25%), Positives = 24/58 (40%), Gaps = 7/58 (12%)
Query: 58 CINCFNCWVYCPDAAILS------REGKLKGVDYSH-CKGCGVCVDVCPTNPKSLWMF 108
CI C C CP + + G++ + C GC C CPT+ S+ ++
Sbjct: 10 CIGCTQCVRACPLDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRVY 67
Score = 23.5 bits (49), Expect = 8.3
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 85 YSHCKGCGVCVDVCP 99
Y C GC CV CP
Sbjct: 7 YDTCIGCTQCVRACP 21
>pdb|1FUI|A Chain A, L-Fucose Isomerase From Escherichia Coli
pdb|1FUI|B Chain B, L-Fucose Isomerase From Escherichia Coli
pdb|1FUI|C Chain C, L-Fucose Isomerase From Escherichia Coli
pdb|1FUI|D Chain D, L-Fucose Isomerase From Escherichia Coli
pdb|1FUI|E Chain E, L-Fucose Isomerase From Escherichia Coli
pdb|1FUI|F Chain F, L-Fucose Isomerase From Escherichia Coli
Length = 591
Score = 24.3 bits (51), Expect = 4.9
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 95 VDVCPTNPKSLWMFEEQIEP-----ATALTQWPQK 124
+D+ PT PK++W F P A AL QK
Sbjct: 97 IDMDPTRPKAIWGFNGTERPGAVYLAAALAAHSQK 131
>pdb|1EH9|A Chain A, Crystal Structure Of Sulfolobus Solfataricus
Glycosyltrehalose Trehalohydrolase
Length = 558
Score = 24.3 bits (51), Expect = 4.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 77 EGKLKGVDYSHCKGCGVCVDV 97
EG K VD +H KG GV +DV
Sbjct: 168 EGFRKLVDEAHKKGLGVILDV 188
>pdb|1GAO|A Chain A, Crystal Structure Of The L44s Mutant Of Ferredoxin I
pdb|1GAO|B Chain B, Crystal Structure Of The L44s Mutant Of Ferredoxin I
pdb|1GAO|C Chain C, Crystal Structure Of The L44s Mutant Of Ferredoxin I
pdb|1GAO|D Chain D, Crystal Structure Of The L44s Mutant Of Ferredoxin I
Length = 106
Score = 24.3 bits (51), Expect = 4.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 58 CINCFNCWVYCPDAAILSRE 77
CI+C +C CP AI S +
Sbjct: 39 CIDCASCEPECPAQAIFSED 58
>pdb|1PNF| Pngase F Complex With Di-N-Acetylchitobiose
pdb|1PNG| Peptide-N(4)-(N-Acetyl-Beta-D-Glucosaminyl) Asparagine Amidase F
(Pngase F) (E.C.3.5.1.52)
Length = 314
Score = 23.5 bits (49), Expect = 8.3
Identities = 11/37 (29%), Positives = 20/37 (53%)
Query: 15 PFEKNAQSEMEKHNDERHYTEQSYFTTSVAHWRVAKP 51
P+ K ++K+ TE++Y T+++ W AKP
Sbjct: 160 PYGKAHTLGLKKNIQLPTNTEKAYLRTTISGWGHAKP 196
>pdb|1JI1|A Chain A, Crystal Structure Analysis Of Thermoactinomyces Vulgaris
R- 47 Alpha-Amylase 1
pdb|1JI1|B Chain B, Crystal Structure Analysis Of Thermoactinomyces Vulgaris
R- 47 Alpha-Amylase 1
Length = 637
Score = 23.5 bits (49), Expect = 8.3
Identities = 18/73 (24%), Positives = 28/73 (37%), Gaps = 10/73 (13%)
Query: 4 WNEFEMG--------AVLFPFEKNAQSEMEKHNDERHYTEQSYFTTSVAHWRVAKPVHNN 55
W+EF A++ + NA + N T FT V+ W K NN
Sbjct: 377 WSEFRNAVKGVNSNAAIIGEYWGNANPWTAQGNQWDAATNFDGFTQPVSEWITGKDYQNN 436
Query: 56 NICINC--FNCWV 66
+ I+ F+ W+
Sbjct: 437 SASISTTQFDSWL 449
>pdb|1PGS| Peptide-N(4)-(N-Acetyl-Beta-D-Glucosaminyl) Asparagine Amidase
(N-Glycosidase F) (Png-Ase F) (E.C.3.5.1.52)
Length = 314
Score = 23.5 bits (49), Expect = 8.3
Identities = 11/37 (29%), Positives = 20/37 (53%)
Query: 15 PFEKNAQSEMEKHNDERHYTEQSYFTTSVAHWRVAKP 51
P+ K ++K+ TE++Y T+++ W AKP
Sbjct: 160 PYGKAHTLGLKKNIQLPTNTEKAYLRTTISGWGHAKP 196
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.132 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 836,026
Number of Sequences: 13198
Number of extensions: 31656
Number of successful extensions: 137
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 81
Number of HSP's gapped (non-prelim): 50
length of query: 130
length of database: 2,899,336
effective HSP length: 78
effective length of query: 52
effective length of database: 1,869,892
effective search space: 97234384
effective search space used: 97234384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)