BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645726|ref|NP_207903.1| adenylosuccinate lyase
(purB) [Helicobacter pylori 26695]
(440 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate ... 419 e-118
pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase >gi|... 404 e-113
pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase >gi|... 402 e-113
pdb|1DOF|A Chain A, The Crystal Structure Of Adenylosuccina... 231 9e-62
pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Del... 67 4e-12
pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Del... 66 9e-12
pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2... 66 9e-12
pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck >gi|2... 65 1e-11
pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey D... 59 1e-09
pdb|1KQ7|A Chain A, E315q Mutant Form Of Fumarase C From E.... 55 1e-08
pdb|1FUQ|A Chain A, Fumarase With Bound Pyromellitic Acid >... 54 3e-08
pdb|1FUO|A Chain A, Fumarase C With Bound Citrate >gi|19421... 54 3e-08
pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish ... 54 3e-08
pdb|1JSW|B Chain B, Native L-Aspartate Ammonia Lyase >gi|23... 54 5e-08
pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substr... 52 2e-07
pdb|1AOS|A Chain A, Human Argininosuccinate Lyase >gi|29146... 48 3e-06
pdb|1K62|B Chain B, Crystal Structure Of The Human Arginino... 48 3e-06
pdb|1YFM| Recombinant Yeast Fumarase 47 6e-06
pdb|1JEY|B Chain B, Crystal Structure Of The Ku Heterodimer... 27 4.6
pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases... 26 7.8
pdb|1DMG|A Chain A, Crystal Structure Of Ribosomal Protein L4 26 7.8
pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free ... 26 7.8
>pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate Lyases
Length = 431
Score = 419 bits (1076), Expect = e-118
Identities = 215/438 (49%), Positives = 300/438 (68%), Gaps = 10/438 (2%)
Query: 1 MLERYANEEMKALWNEQTKFETYLEVEKAVVRAWNKLGQIQDSDCEKICAKAAFNLERIK 60
M+ERY+ EM A+W ++ +F+ +LEVE AW +LG I D + + A+F++ RI
Sbjct: 1 MIERYSRPEMSAIWTDENRFQAWLEVEILACEAWAELGVIPKEDVKVMRENASFDINRIL 60
Query: 61 EIEKTTKHDLIAFTTCVAESLGEESRFFHYGITSSDCIDTAMALLMTKSLKLIQKGVKNL 120
EIEK T+HD++AFT V+ESLGEE ++ HYG+TS+D +DTA++ L+ ++ ++ K ++
Sbjct: 61 EIEKDTRHDVVAFTRAVSESLGEERKWVHYGLTSTDVVDTALSYLLKQANDILLKDLERF 120
Query: 121 YETLKNRALEHKDTLMVGRSHGVFGEPITFGLVLALFADEIKRHLKALDLTMEFISVGAI 180
+ +K +A EHK T+M+GR+HGV EP TFGL LAL+ +E+KR+L+ I VG I
Sbjct: 121 VDIIKEKAKEHKYTVMMGRTHGVHAEPTTFGLKLALWHEEMKRNLERFKQAKAGIEVGKI 180
Query: 181 SGAMGNFAHAPLELEELACEFLGLKTANISNQVIQRDRYARLACDLALLASSCEKIAVNI 240
SGA+G +A+ +E+ CE LGLK A IS Q +QRDR+A LAL+A+S EK AV I
Sbjct: 181 SGAVGTYANIDPFVEQYVCEKLGLKAAPISTQTLQRDRHADYMATLALIATSIEKFAVEI 240
Query: 241 RHLQRSEVYEVEEAFSTGQKGSSAMPHKRNPILSENITGLCRVIRSFTTPMLENVALWHE 300
R LQ+SE EVEE F+ GQKGSSAMPHKRNPI SEN+TG+ RVIR + ENV LWHE
Sbjct: 241 RGLQKSETREVEEFFAKGQKGSSAMPHKRNPIGSENMTGMARVIRGYMMTAYENVPLWHE 300
Query: 301 RDMSHSSVERFALPDLFITSDFMLSRLNSVIKNLVVYPKNMLKNLALSGGLVFSQRVLLE 360
RD+SHSS ER LPD I ++ML+R ++++KNL V+P+NM +N+ + GL++SQRVLL
Sbjct: 301 RDISHSSAERIILPDATIALNYMLNRFSNIVKNLTVFPENMKRNMDRTLGLIYSQRVLLA 360
Query: 361 LPKKGLSREESYSIVQENAMKIWEVLQQGAFKNTDENLFLNALLNDERLKKYLSEDEIKA 420
L GL+REE+Y VQ AM+ WE +Q F+ E +E++ LS ++I
Sbjct: 361 LIDTGLTREEAYDTVQPKAMEAWE--KQVPFRELVE--------AEEKITSRLSPEKIAD 410
Query: 421 CFDYNYYTKNVGAIFKRV 438
CFDYNY+ KNV IF+R+
Sbjct: 411 CFDYNYHLKNVDLIFERL 428
>pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3U|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 431
Score = 404 bits (1038), Expect = e-113
Identities = 207/437 (47%), Positives = 296/437 (67%), Gaps = 10/437 (2%)
Query: 1 MLERYANEEMKALWNEQTKFETYLEVEKAVVRAWNKLGQIQDSDCEKICAKAAFNLERIK 60
M+ERY+ MK LW E+ K+ +LEVE AV RA+ +LG I E+I A ++E K
Sbjct: 1 MVERYSLSPMKDLWTEEAKYRRWLEVELAVTRAYEELGMIPKGVTERIRNNAKIDVELFK 60
Query: 61 EIEKTTKHDLIAFTTCVAESLGEESRFFHYGITSSDCIDTAMALLMTKSLKLIQKGVKNL 120
+IE+ T HD++AF + +GE+SRFFHYG+TSSD +DTA +L + ++ K++ + +K
Sbjct: 61 KIEEKTNHDVVAFVEGIGSMIGEDSRFFHYGLTSSDVLDTANSLALVEAGKILLESLKEF 120
Query: 121 YETLKNRALEHKDTLMVGRSHGVFGEPITFGLVLALFADEIKRHLKALDLTMEFISVGAI 180
+ L A +K T +GR+HGV EP +FGL + + E+KR+++ L+ +E +S G I
Sbjct: 121 CDVLWEVANRYKHTPTIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQRLERAIEEVSYGKI 180
Query: 181 SGAMGNFAHAPLELEELACEFLGLKTANISNQVIQRDRYARLACDLALLASSCEKIAVNI 240
SGA+GN+A+ P E+EE A +LGLK +S QV+ RDR+A LA++A+ E+IAV I
Sbjct: 181 SGAVGNYANVPPEVEEKALSYLGLKPEPVSTQVVPRDRHAFYLSTLAIVAAGIERIAVEI 240
Query: 241 RHLQRSEVYEVEEAFSTGQKGSSAMPHKRNPILSENITGLCRVIRSFTTPMLENVALWHE 300
RHLQR+EV EVEE F GQ+GSSAMPHK+NPI E +TGL R++R++ P LEN+ALWHE
Sbjct: 241 RHLQRTEVLEVEEPFRKGQRGSSAMPHKKNPITCERLTGLSRMMRAYVDPSLENIALWHE 300
Query: 301 RDMSHSSVERFALPDLFITSDFMLSRLNSVIKNLVVYPKNMLKNLALSGGLVFSQRVLLE 360
RD+SHSSVER+ PD T +M+ +V++N+ V + M KN+ L+ GLVFSQRVLL+
Sbjct: 301 RDISHSSVERYVFPDATQTLYYMIVTATNVVRNMKVNEERMKKNIDLTKGLVFSQRVLLK 360
Query: 361 LPKKGLSREESYSIVQENAMKIWEVLQQGAFKNTDENLFLNALLNDERLKKYLSEDEIKA 420
L +KGL+R+E+Y IVQ NA+K W E FL LL DE +KK ++++E++
Sbjct: 361 LIEKGLTRKEAYDIVQRNALKTW----------NSEKHFLEYLLEDEEVKKLVTKEELEE 410
Query: 421 CFDYNYYTKNVGAIFKR 437
FD +YY K+V IF+R
Sbjct: 411 LFDISYYLKHVDHIFER 427
>pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3C|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 429
Score = 402 bits (1033), Expect = e-113
Identities = 206/436 (47%), Positives = 295/436 (67%), Gaps = 10/436 (2%)
Query: 2 LERYANEEMKALWNEQTKFETYLEVEKAVVRAWNKLGQIQDSDCEKICAKAAFNLERIKE 61
+ERY+ MK LW E+ K+ +LEVE AV RA+ +LG I E+I A ++E K+
Sbjct: 1 VERYSLSPMKDLWTEEAKYRRWLEVELAVTRAYEELGMIPKGVTERIRNNAKIDVELFKK 60
Query: 62 IEKTTKHDLIAFTTCVAESLGEESRFFHYGITSSDCIDTAMALLMTKSLKLIQKGVKNLY 121
IE+ T HD++AF + +GE+SRFFHYG+TSSD +DTA +L + ++ K++ + +K
Sbjct: 61 IEEKTNHDVVAFVEGIGSMIGEDSRFFHYGLTSSDVLDTANSLALVEAGKILLESLKEFC 120
Query: 122 ETLKNRALEHKDTLMVGRSHGVFGEPITFGLVLALFADEIKRHLKALDLTMEFISVGAIS 181
+ L A +K T +GR+HGV EP +FGL + + E+KR+++ L+ +E +S G IS
Sbjct: 121 DVLWEVANRYKHTPTIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQRLERAIEEVSYGKIS 180
Query: 182 GAMGNFAHAPLELEELACEFLGLKTANISNQVIQRDRYARLACDLALLASSCEKIAVNIR 241
GA+GN+A+ P E+EE A +LGLK +S QV+ RDR+A LA++A+ E+IAV IR
Sbjct: 181 GAVGNYANVPPEVEEKALSYLGLKPEPVSTQVVPRDRHAFYLSTLAIVAAGIERIAVEIR 240
Query: 242 HLQRSEVYEVEEAFSTGQKGSSAMPHKRNPILSENITGLCRVIRSFTTPMLENVALWHER 301
HLQR+EV EVEE F GQ+GSSAMPHK+NPI E +TGL R++R++ P LEN+ALWHER
Sbjct: 241 HLQRTEVLEVEEPFRKGQRGSSAMPHKKNPITCERLTGLSRMMRAYVDPSLENIALWHER 300
Query: 302 DMSHSSVERFALPDLFITSDFMLSRLNSVIKNLVVYPKNMLKNLALSGGLVFSQRVLLEL 361
D+SHSSVER+ PD T +M+ +V++N+ V + M KN+ L+ GLVFSQRVLL+L
Sbjct: 301 DISHSSVERYVFPDATQTLYYMIVTATNVVRNMKVNEERMKKNIDLTKGLVFSQRVLLKL 360
Query: 362 PKKGLSREESYSIVQENAMKIWEVLQQGAFKNTDENLFLNALLNDERLKKYLSEDEIKAC 421
+KGL+R+E+Y IVQ NA+K W E FL LL DE +KK ++++E++
Sbjct: 361 IEKGLTRKEAYDIVQRNALKTW----------NSEKHFLEYLLEDEEVKKLVTKEELEEL 410
Query: 422 FDYNYYTKNVGAIFKR 437
FD +YY K+V IF+R
Sbjct: 411 FDISYYLKHVDHIFER 426
>pdb|1DOF|A Chain A, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|D Chain D, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|B Chain B, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|C Chain C, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
Length = 403
Score = 231 bits (590), Expect = 9e-62
Identities = 138/376 (36%), Positives = 216/376 (56%), Gaps = 9/376 (2%)
Query: 4 RYANEEMKALWNEQTKFETYLEVEKAVVRAWNKLGQIQDSDCEKICAKAAFNLERIKEIE 63
RY +EE++ L+ + YLEVE+A+V A +LG + CEK+ KA+ + + + +E
Sbjct: 9 RYGSEEIRRLFTNEAIINAYLEVERALVCALEELGVAERGCCEKV-NKASVSADEVYRLE 67
Query: 64 KTTKHDLIAFTTCVAESLGEESRFFHYGITSSDCIDTAMALLMTKSLKLIQKGVKNLYET 123
+ T HD+++ + + G R+ HYG TS+D IDTA ALL+ ++L +++ + + +
Sbjct: 68 RETGHDILSLVLLLEQKSG--CRYVHYGATSNDIIDTAWALLIRRALAAVKEKARAVGDQ 125
Query: 124 LKNRALEHKDTLMVGRSHGVFGEPITFGLVLALFADEIKRHLKALDLTMEFI--SVGAIS 181
L + A ++K MVGR+HG + EPIT G A + E+ + L L EFI +G
Sbjct: 126 LASMARKYKTLEMVGRTHGQWAEPITLGFKFANYYYELYIACRQLALAEEFIRAKIGGAV 185
Query: 182 GAMGNFAHAPLELEELACEFLGLKTANISNQVIQRDRYARLACDLALLASSCEKIAVNIR 241
G M ++ LE+ E LGL I+ QV R+ +A LA LAL+A+ E++AV IR
Sbjct: 186 GTMASWGELGLEVRRRVAERLGLPHHVITTQVAPRESFAVLASALALMAAVFERLAVEIR 245
Query: 242 HLQRSEVYEVEEAFSTGQKGSSAMPHKRNPILSENITGLCRVIRSFTTPMLENVALWHER 301
L R E+ EV E G GSSAMPHK NP SE I L R +R+ T ENVALWHER
Sbjct: 246 ELSRPEIGEVVE----GGGGSSAMPHKANPTASERIVSLARYVRALTHVAFENVALWHER 301
Query: 302 DMSHSSVERFALPDLFITSDFMLSRLNSVIKNLVVYPKNMLKNLALSGGLVFSQRVLLEL 361
D+++S+ ER +P+ + D +L+ V+KN+ + + + +NL + + ++ + +
Sbjct: 302 DLTNSANERVWIPEALLALDEILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRM 361
Query: 362 PKKGLSREESYSIVQE 377
K+G SR E+Y +E
Sbjct: 362 IKEGASRAEAYKKAKE 377
>pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|D Chain D, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|B Chain B, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
Length = 468
Score = 67.0 bits (162), Expect = 4e-12
Identities = 93/373 (24%), Positives = 162/373 (42%), Gaps = 29/373 (7%)
Query: 16 EQTKFETYLEVEKAVVRAWNKLGQIQDSDCEKICAKAAFNLERIKE-------IEKTTKH 68
+Q E ++ A +A K G + ++ EKI + LE+I E + K +
Sbjct: 33 DQRLSEVDIQGSMAYAKALEKAGILTKTELEKILS----GLEKISEEWSKGVFVVKQSDE 88
Query: 69 DL-IAFTTCVAESLGEESRFFHYGITSSDCIDTAMALLMTKSLKLIQKGVKNLYETLKNR 127
D+ A + E +G+ + H G + +D + T + L M SL +I + L +TL R
Sbjct: 89 DIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVER 148
Query: 128 ALEHKDTLMVGRSHGVFGEPITFGLVLALFADEIKRHLKALDLTMEFISVGAI-SGAM-G 185
A D ++ G +H +PI + L A + R + L + I+V + SGA+ G
Sbjct: 149 AAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAG 208
Query: 186 NFAHAPLELEELACEFLGLKTANISNQVIQRDRYARLACDLALLASSCEKIAVNIRHLQR 245
N E+ EF + + N + + +RD LL K+A ++
Sbjct: 209 NPLDIDREMLRSELEFASI-SLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYST 267
Query: 246 SEV--YEVEEAFSTGQKGSSAMPHKRNPILSENITGLC-RVIRSFTT--PMLENVALWHE 300
SE + +AFSTG SS MP K+NP E I RV + +L+ + +
Sbjct: 268 SEFGFLTLSDAFSTG---SSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYN 324
Query: 301 RDMSHSSVERFALPDLFITSDFMLSRLNSVIKNLVVYPKNMLKNLALSGGLVFSQRVLLE 360
+D+ ++ A+ D+ T +L VI L + +NM K L + + + L
Sbjct: 325 KDLQE---DKEAVFDVVDTLTAVLQVATGVISTLQISKENMEKALTPE---MLATDLALY 378
Query: 361 LPKKGLSREESYS 373
L +KG+ ++++
Sbjct: 379 LVRKGVPFRQAHT 391
>pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
pdb|1HY0|A Chain A, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 65.9 bits (159), Expect = 9e-12
Identities = 91/373 (24%), Positives = 161/373 (42%), Gaps = 29/373 (7%)
Query: 16 EQTKFETYLEVEKAVVRAWNKLGQIQDSDCEKICAKAAFNLERIKE--------IEKTTK 67
EQ E ++ A +A K G + ++ EKI + LE+I E + ++ +
Sbjct: 31 EQRLSEVDIQASIAYAKALEKAGILTKTELEKILS----GLEKISEELSKGVIVVTQSDE 86
Query: 68 HDLIAFTTCVAESLGEESRFFHYGITSSDCIDTAMALLMTKSLKLIQKGVKNLYETLKNR 127
A + E +G+ + H G + ++ + T + L M SL +I + L +TL R
Sbjct: 87 DIQTANERRLKELIGDIAGKLHTGRSRNEQVVTDLKLFMKNSLSIISTHLLQLIKTLVER 146
Query: 128 ALEHKDTLMVGRSHGVFGEPITFGLVLALFADEIKRHLKALDLTMEFISVGAI-SGAM-G 185
A D ++ G +H +PI + L A + R + L + I+V + SGA+ G
Sbjct: 147 AAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAG 206
Query: 186 NFAHAPLELEELACEFLGLKTANISNQVIQRDRYARLACDLALLASSCEKIAVNIRHLQR 245
N E+ EF + + N + + +RD LL K+A ++
Sbjct: 207 NPLDIDREMLRSELEFASI-SLNSMDAISERDFVVEFLSVATLLLIHLSKMAEDLIIYST 265
Query: 246 SEV--YEVEEAFSTGQKGSSAMPHKRNPILSENITGLC-RVIRSFTT--PMLENVALWHE 300
SE + +AFSTG SS MP K+NP E I RV + +L+ + +
Sbjct: 266 SEFGFLTLSDAFSTG---SSLMPQKKNPDSLELIRSKSGRVFGRLASILMVLKGLPSTYN 322
Query: 301 RDMSHSSVERFALPDLFITSDFMLSRLNSVIKNLVVYPKNMLKNLALSGGLVFSQRVLLE 360
+D+ ++ A+ D+ T +L VI L + +NM K L + + + L
Sbjct: 323 KDLQE---DKEAVIDVVDTLTAVLQVATGVISTLQISKENMEKALTPE---MLATDLALY 376
Query: 361 LPKKGLSREESYS 373
L +KG+ ++++
Sbjct: 377 LVRKGMPFRQAHT 389
>pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|C Chain C, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|B Chain B, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
Length = 468
Score = 65.9 bits (159), Expect = 9e-12
Identities = 92/373 (24%), Positives = 162/373 (42%), Gaps = 29/373 (7%)
Query: 16 EQTKFETYLEVEKAVVRAWNKLGQIQDSDCEKICAKAAFNLERIKE-------IEKTTKH 68
+Q E ++ A +A K G + ++ EKI + LE+I E + K +
Sbjct: 33 DQRLSEVDIQGSMAYAKALEKAGILTKTELEKILS----GLEKISEEWSKGVFVVKQSDE 88
Query: 69 DL-IAFTTCVAESLGEESRFFHYGITSSDCIDTAMALLMTKSLKLIQKGVKNLYETLKNR 127
D+ A + E +G+ + H G + +D + T + L M SL +I + L +TL R
Sbjct: 89 DIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVER 148
Query: 128 ALEHKDTLMVGRSHGVFGEPITFGLVLALFADEIKRHLKALDLTMEFISVGAI-SGAM-G 185
A D ++ G +H +PI + L A + R + L + I+V + SGA+ G
Sbjct: 149 AAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAG 208
Query: 186 NFAHAPLELEELACEFLGLKTANISNQVIQRDRYARLACDLALLASSCEKIAVNIRHLQR 245
N E+ EF + + N + + +RD LL K+A ++
Sbjct: 209 NPLDIDREMLRSELEFASI-SLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYST 267
Query: 246 SEV--YEVEEAFSTGQKGSSAMPHKRNPILSENITGLC-RVIRSFTT--PMLENVALWHE 300
SE + +AFSTG +S MP K+NP E I RV + +L+ + +
Sbjct: 268 SEFGFLTLSDAFSTG---ASLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYN 324
Query: 301 RDMSHSSVERFALPDLFITSDFMLSRLNSVIKNLVVYPKNMLKNLALSGGLVFSQRVLLE 360
+D+ ++ A+ D+ T +L VI L + +NM K L + + + L
Sbjct: 325 KDLQE---DKEAVFDVVDTLTAVLQVATGVISTLQISKENMEKALTPE---MLATDLALY 378
Query: 361 LPKKGLSREESYS 373
L +KG+ ++++
Sbjct: 379 LVRKGVPFRQAHT 391
>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck
pdb|1AUW|B Chain B, H91n Delta 2 Crystallin From Duck
pdb|1AUW|C Chain C, H91n Delta 2 Crystallin From Duck
pdb|1AUW|D Chain D, H91n Delta 2 Crystallin From Duck
Length = 468
Score = 65.5 bits (158), Expect = 1e-11
Identities = 93/373 (24%), Positives = 162/373 (42%), Gaps = 29/373 (7%)
Query: 16 EQTKFETYLEVEKAVVRAWNKLGQIQDSDCEKICAKAAFNLERIKE-------IEKTTKH 68
+Q E ++ A +A K G + ++ EKI + LE+I E + K +
Sbjct: 33 DQRLSEVDIQGSMAYAKALEKAGILTKTELEKILS----GLEKISEEWSKGVFVVKQSDE 88
Query: 69 DL-IAFTTCVAESLGEESRFFHYGITSSDCIDTAMALLMTKSLKLIQKGVKNLYETLKNR 127
D+ A + E +G+ + H G + +D + T + L M SL +I + L +TL R
Sbjct: 89 DINTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVER 148
Query: 128 ALEHKDTLMVGRSHGVFGEPITFGLVLALFADEIKRHLKALDLTMEFISVGAI-SGAM-G 185
A D ++ G +H +PI + L A + R + L + I+V + SGA+ G
Sbjct: 149 AAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAG 208
Query: 186 NFAHAPLELEELACEFLGLKTANISNQVIQRDRYARLACDLALLASSCEKIAVNIRHLQR 245
N E+ EF + + N + + +RD LL K+A ++
Sbjct: 209 NPLDIDREMLRSELEFASI-SLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYST 267
Query: 246 SEVYEV--EEAFSTGQKGSSAMPHKRNPILSENITGLC-RVIRSFTT--PMLENVALWHE 300
SE + +AFSTG SS MP K+NP E I RV + +L+ + +
Sbjct: 268 SEFGFLTDSDAFSTG---SSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYN 324
Query: 301 RDMSHSSVERFALPDLFITSDFMLSRLNSVIKNLVVYPKNMLKNLALSGGLVFSQRVLLE 360
+D+ ++ A+ D+ T +L VI L + +NM K L + + + L
Sbjct: 325 KDLQE---DKEAVFDVVDTLTAVLQVATGVISTLQISKENMEKALTPE---MLATDLALY 378
Query: 361 LPKKGLSREESYS 373
L +KG+ ++++
Sbjct: 379 LVRKGVPFRQAHT 391
>pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|C Chain C, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|B Chain B, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|D Chain D, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 58.5 bits (140), Expect = 1e-09
Identities = 91/369 (24%), Positives = 156/369 (41%), Gaps = 35/369 (9%)
Query: 16 EQTKFETYLEVEKAVVRAWNKLGQIQDSDCEKICAKAAFNLERIKEIEKTTKHDLI---- 71
EQ E ++ A +A K + ++ EKI + LE+I E +++K L+
Sbjct: 31 EQRLTEVDIQASMAYAKALEKASILTKTELEKILS----GLEKISE--ESSKGVLVMTQS 84
Query: 72 ------AFTTCVAESLGEESRFFHYGITSSDCIDTAMALLMTKSLKLIQKGVKNLYETLK 125
A + E +G+ + G + ++ + T + LL+ S+ +I + L +TL
Sbjct: 85 DEDIQTAIERRLKELIGDIAGKLQTGRSRNEQVVTDLKLLLKSSISVISTHLLQLIKTLV 144
Query: 126 NRALEHKDTLMVGRSHGVFGEPITFGLVLALFADEIKRHLKALDLTMEFISVGAISGAMG 185
RA D +M G +H PI + L A + R + L + I+V + G
Sbjct: 145 ERAAIEIDIIMPGYTHLQKALPIRWSQFLLSHAVALTRDSERLGEVKKRITVLPLGS--G 202
Query: 186 NFAHAPLELE-ELACEFLGLK--TANISNQVIQRDRYARLACDLALLASSCEKIAVNIRH 242
A PLE++ EL L + T N + + +RD L LL K+A ++
Sbjct: 203 VLAGNPLEIDRELLRSELDMTSITLNSIDAISERDFVVELISVATLLMIHLSKLAEDLII 262
Query: 243 LQRSEV--YEVEEAFSTGQKGSSAMPHKRNPILSENITGLC-RVIRSFTT--PMLENVAL 297
+E + +A+STG SS +P K+NP E I RV +L+ +
Sbjct: 263 FSTTEFGFVTLSDAYSTG---SSLLPQKKNPDSLELIRSKAGRVFGRLAAILMVLKGIPS 319
Query: 298 WHERDMSHSSVERFALPDLFITSDFMLSRLNSVIKNLVVYPKNMLKNLALSGGLVFSQRV 357
+D+ ++ A+ D+ T +L VI L + +NM K L + S +
Sbjct: 320 TFSKDLQE---DKEAVLDVVDTLTAVLQVATGVISTLQINKENMEKALTPE---LLSTDL 373
Query: 358 LLELPKKGL 366
L L +KG+
Sbjct: 374 ALYLVRKGM 382
>pdb|1KQ7|A Chain A, E315q Mutant Form Of Fumarase C From E.Coli
pdb|1KQ7|B Chain B, E315q Mutant Form Of Fumarase C From E.Coli
Length = 467
Score = 55.5 bits (132), Expect = 1e-08
Identities = 57/202 (28%), Positives = 97/202 (47%), Gaps = 16/202 (7%)
Query: 93 TSSDCIDTAM--ALLMTKSLKLIQKGVKNLYETLKNRALEHKDTLMVGRSHGVFGEPITF 150
+S+D TAM A L+ +LI + +K L +TL ++ D + +GR+H P+T
Sbjct: 139 SSNDVFPTAMHVAALLALRKQLIPQ-LKTLTQTLNEKSRAFADIVKIGRTHLQDATPLTL 197
Query: 151 GLVLALFADEIKRHLKALDLTMEFISVGAISG-AMGNFAHAPLELEELACEFLGLKTANI 209
G ++ + ++ +LK ++ ++ ++ A+ G A+G + E + L + T
Sbjct: 198 GQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPEYARRVADELAVITC-- 255
Query: 210 SNQVIQRDRYARLA-CD--------LALLASSCEKIAVNIRHLQRSEVYEVEE-AFSTGQ 259
+ V +++ LA CD L LA+S KIA ++R L + E + Q
Sbjct: 256 APFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENQ 315
Query: 260 KGSSAMPHKRNPILSENITGLC 281
GSS MP K NP E +T LC
Sbjct: 316 PGSSIMPGKVNPTQCEALTMLC 337
>pdb|1FUQ|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUP|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUP|B Chain B, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|B Chain B, Fumarase With Bound Pyromellitic Acid
Length = 472
Score = 54.3 bits (129), Expect = 3e-08
Identities = 56/202 (27%), Positives = 97/202 (47%), Gaps = 16/202 (7%)
Query: 93 TSSDCIDTAM--ALLMTKSLKLIQKGVKNLYETLKNRALEHKDTLMVGRSHGVFGEPITF 150
+S+D TAM A L+ +LI + +K L +TL ++ D + +GR+H P+T
Sbjct: 139 SSNDVFPTAMHVAALLALRKQLIPQ-LKTLTQTLNEKSRAFADIVKIGRTHLQDATPLTL 197
Query: 151 GLVLALFADEIKRHLKALDLTMEFISVGAISG-AMGNFAHAPLELEELACEFLGLKTANI 209
G ++ + ++ +LK ++ ++ ++ A+ G A+G + E + L + T
Sbjct: 198 GQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPEYARRVADELAVITC-- 255
Query: 210 SNQVIQRDRYARLA-CD--------LALLASSCEKIAVNIRHLQRSEVYEVEE-AFSTGQ 259
+ V +++ LA CD L LA+S KIA ++R L + E + +
Sbjct: 256 APFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENE 315
Query: 260 KGSSAMPHKRNPILSENITGLC 281
GSS MP K NP E +T LC
Sbjct: 316 PGSSIMPGKVNPTQCEALTMLC 337
>pdb|1FUO|A Chain A, Fumarase C With Bound Citrate
pdb|1FUO|B Chain B, Fumarase C With Bound Citrate
Length = 467
Score = 54.3 bits (129), Expect = 3e-08
Identities = 56/202 (27%), Positives = 97/202 (47%), Gaps = 16/202 (7%)
Query: 93 TSSDCIDTAM--ALLMTKSLKLIQKGVKNLYETLKNRALEHKDTLMVGRSHGVFGEPITF 150
+S+D TAM A L+ +LI + +K L +TL ++ D + +GR+H P+T
Sbjct: 139 SSNDVFPTAMHVAALLALRKQLIPQ-LKTLTQTLNEKSRAFADIVKIGRTHLQDATPLTL 197
Query: 151 GLVLALFADEIKRHLKALDLTMEFISVGAISG-AMGNFAHAPLELEELACEFLGLKTANI 209
G ++ + ++ +LK ++ ++ ++ A+ G A+G + E + L + T
Sbjct: 198 GQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPEYARRVADELAVITC-- 255
Query: 210 SNQVIQRDRYARLA-CD--------LALLASSCEKIAVNIRHLQRSEVYEVEE-AFSTGQ 259
+ V +++ LA CD L LA+S KIA ++R L + E + +
Sbjct: 256 APFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENE 315
Query: 260 KGSSAMPHKRNPILSENITGLC 281
GSS MP K NP E +T LC
Sbjct: 316 PGSSIMPGKVNPTQCEALTMLC 337
>pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
pdb|2FUS|B Chain B, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
Length = 467
Score = 54.3 bits (129), Expect = 3e-08
Identities = 56/202 (27%), Positives = 97/202 (47%), Gaps = 16/202 (7%)
Query: 93 TSSDCIDTAM--ALLMTKSLKLIQKGVKNLYETLKNRALEHKDTLMVGRSHGVFGEPITF 150
+S+D TAM A L+ +LI + +K L +TL ++ D + +GR+H P+T
Sbjct: 139 SSNDVFPTAMHVAALLALRKQLIPQ-LKTLTQTLNEKSRAFADIVKIGRTHLQDATPLTL 197
Query: 151 GLVLALFADEIKRHLKALDLTMEFISVGAISG-AMGNFAHAPLELEELACEFLGLKTANI 209
G ++ + ++ +LK ++ ++ ++ A+ G A+G + E + L + T
Sbjct: 198 GQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPEYARRVADELAVITC-- 255
Query: 210 SNQVIQRDRYARLA-CD--------LALLASSCEKIAVNIRHLQRSEVYEVEE-AFSTGQ 259
+ V +++ LA CD L LA+S KIA ++R L + E + +
Sbjct: 256 APFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENE 315
Query: 260 KGSSAMPHKRNPILSENITGLC 281
GSS MP K NP E +T LC
Sbjct: 316 PGSSIMPGKVNPTQCEALTMLC 337
>pdb|1JSW|B Chain B, Native L-Aspartate Ammonia Lyase
pdb|1JSW|A Chain A, Native L-Aspartate Ammonia Lyase
pdb|1JSW|D Chain D, Native L-Aspartate Ammonia Lyase
pdb|1JSW|C Chain C, Native L-Aspartate Ammonia Lyase
Length = 478
Score = 53.5 bits (127), Expect = 5e-08
Identities = 54/209 (25%), Positives = 91/209 (42%), Gaps = 14/209 (6%)
Query: 93 TSSDCIDTAMALLMTKSLKLIQKGVKNLYETLKNRALEHKDTLMVGRSHGVFGEPITFGL 152
+++D T + + SL + + L E + +A+E +D L +GR+ P+T G
Sbjct: 143 STNDAYPTGFRIAVYSSLIKLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQ 202
Query: 153 VLALFADEIKRHLKALDLTME-FISVGAISGAMGNFAHAPLELEELACEFLGLKTA---- 207
F+ +K +K + T E + V + A+G + P E LA + L T
Sbjct: 203 EFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTGLNTPKEYSPLAVKKLAEVTGFPCV 262
Query: 208 ---NISNQVIQRDRYARLACDLALLASSCEKIAVNIRHLQ---RSEVYEVEEAFSTGQKG 261
++ Y + L LA KI ++R L R+ + E+ Q G
Sbjct: 263 PAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEIN--LPELQAG 320
Query: 262 SSAMPHKRNPILSENITGLC-RVIRSFTT 289
SS MP K NP++ E + +C +VI + TT
Sbjct: 321 SSIMPAKVNPVVPEVVNQVCFKVIGNDTT 349
>pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
pdb|1FUR|B Chain B, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
Length = 467
Score = 51.6 bits (122), Expect = 2e-07
Identities = 55/202 (27%), Positives = 97/202 (47%), Gaps = 16/202 (7%)
Query: 93 TSSDCIDTAM--ALLMTKSLKLIQKGVKNLYETLKNRALEHKDTLMVGRSHGVFGEPITF 150
+S+D TAM A L+ +LI + +K L +TL ++ D + +GR++ P+T
Sbjct: 139 SSNDVFPTAMHVAALLALRKQLIPQ-LKTLTQTLNEKSRAFADIVKIGRTNLQDATPLTL 197
Query: 151 GLVLALFADEIKRHLKALDLTMEFISVGAISG-AMGNFAHAPLELEELACEFLGLKTANI 209
G ++ + ++ +LK ++ ++ ++ A+ G A+G + E + L + T
Sbjct: 198 GQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPEYARRVADELAVITC-- 255
Query: 210 SNQVIQRDRYARLA-CD--------LALLASSCEKIAVNIRHLQRSEVYEVEE-AFSTGQ 259
+ V +++ LA CD L LA+S KIA ++R L + E + +
Sbjct: 256 APFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENE 315
Query: 260 KGSSAMPHKRNPILSENITGLC 281
GSS MP K NP E +T LC
Sbjct: 316 PGSSIMPGKVNPTQCEALTMLC 337
>pdb|1AOS|A Chain A, Human Argininosuccinate Lyase
pdb|1AOS|B Chain B, Human Argininosuccinate Lyase
Length = 464
Score = 47.8 bits (112), Expect = 3e-06
Identities = 82/368 (22%), Positives = 150/368 (40%), Gaps = 37/368 (10%)
Query: 79 ESLGEESRFFHYGITSSDCIDTAMALLMTKSLKLIQKGVKNLYETLKNRALEHKDTLMVG 138
E +G + H G + +D + T + L M ++ + + L T+ +RA +D L G
Sbjct: 98 ELIGATAGKLHTGRSRNDQVVTDLRLWMRQTCSTLSGLLWELIRTMVDRAEAERDVLFPG 157
Query: 139 RSHGVFGEPITFGLVLALFADEIKRHLKALDLTMEFISVGAI-SGAM-GNFAHAPLELEE 196
+H +PI + + A + R + L + I+V + SGA+ GN EL
Sbjct: 158 YTHLQRAQPIRWSHWILSHAVALTRDSERLLEVRKRINVLPLGSGAIAGNPLGVDRELLR 217
Query: 197 LACEFLGLKTANISNQVIQRDRYARLACDLALLASSCEKIAVNIRHLQRSEV--YEVEEA 254
F G T N + +RD A +L + ++A ++ E ++ +A
Sbjct: 218 AELNF-GAITLNSMDATSERDFVAEFLFWRSLCMTHLSRMAEDLILYCTKEFSFVQLSDA 276
Query: 255 FSTGQKGSSAMPHKRNPILSE-------NITGLCRVIRSFTTPMLENVALWHERDMSHSS 307
+STG SS MP K+NP E + G C + L+ + + +D+
Sbjct: 277 YSTG---SSLMPQKKNPDSLELIRSKAGRVFGRCAGL----LMTLKGLPSTYNKDLQEDK 329
Query: 308 VERFALPDLFITSDFMLSRLNSVIKNLVVYPKNMLKNLALSGGLVFSQRVLLELPKKGLS 367
F + D T +L VI L ++ +NM ALS ++ + + L +KG+
Sbjct: 330 EAVFEVSD---TMSAVLQVATGVISTLQIHQENM--GQALSPDMLATD-LAYYLVRKGMP 383
Query: 368 REESYSIVQENAMKIWEVLQQGAFKNTDENLFLNAL-LNDERLKKYLSEDEIKACFDYNY 426
+++ E + F + + LN L L + + L ++ +DY +
Sbjct: 384 FRQAH-----------EASGKAVFMAETKGVALNQLSLQELQTISPLFSGDVICVWDYRH 432
Query: 427 YTKNVGAI 434
+ GA+
Sbjct: 433 SVEQYGAL 440
>pdb|1K62|B Chain B, Crystal Structure Of The Human Argininosuccinate Lyase
Q286r Mutant
pdb|1K62|A Chain A, Crystal Structure Of The Human Argininosuccinate Lyase
Q286r Mutant
Length = 464
Score = 47.8 bits (112), Expect = 3e-06
Identities = 82/368 (22%), Positives = 150/368 (40%), Gaps = 37/368 (10%)
Query: 79 ESLGEESRFFHYGITSSDCIDTAMALLMTKSLKLIQKGVKNLYETLKNRALEHKDTLMVG 138
E +G + H G + +D + T + L M ++ + + L T+ +RA +D L G
Sbjct: 98 ELIGATAGKLHTGRSRNDQVVTDLRLWMRQTCSTLSGLLWELIRTMVDRAEAERDVLFPG 157
Query: 139 RSHGVFGEPITFGLVLALFADEIKRHLKALDLTMEFISVGAI-SGAM-GNFAHAPLELEE 196
+H +PI + + A + R + L + I+V + SGA+ GN EL
Sbjct: 158 YTHLQRAQPIRWSHWILSHAVALTRDSERLLEVRKRINVLPLGSGAIAGNPLGVDRELLR 217
Query: 197 LACEFLGLKTANISNQVIQRDRYARLACDLALLASSCEKIAVNIRHLQRSEV--YEVEEA 254
F G T N + +RD A +L + ++A ++ E ++ +A
Sbjct: 218 AELNF-GAITLNSMDATSERDFVAEFLFWRSLCMTHLSRMAEDLILYCTKEFSFVQLSDA 276
Query: 255 FSTGQKGSSAMPHKRNPILSE-------NITGLCRVIRSFTTPMLENVALWHERDMSHSS 307
+STG SS MP K+NP E + G C + L+ + + +D+
Sbjct: 277 YSTG---SSLMPRKKNPDSLELIRSKAGRVFGRCAGL----LMTLKGLPSTYNKDLQEDK 329
Query: 308 VERFALPDLFITSDFMLSRLNSVIKNLVVYPKNMLKNLALSGGLVFSQRVLLELPKKGLS 367
F + D T +L VI L ++ +NM ALS ++ + + L +KG+
Sbjct: 330 EAVFEVSD---TMSAVLQVATGVISTLQIHQENM--GQALSPDMLATD-LAYYLVRKGMP 383
Query: 368 REESYSIVQENAMKIWEVLQQGAFKNTDENLFLNAL-LNDERLKKYLSEDEIKACFDYNY 426
+++ E + F + + LN L L + + L ++ +DY +
Sbjct: 384 FRQAH-----------EASGKAVFMAETKGVALNQLSLQELQTISPLFSGDVICVWDYRH 432
Query: 427 YTKNVGAI 434
+ GA+
Sbjct: 433 SVEQYGAL 440
>pdb|1YFM| Recombinant Yeast Fumarase
Length = 488
Score = 46.6 bits (109), Expect = 6e-06
Identities = 48/200 (24%), Positives = 89/200 (44%), Gaps = 12/200 (6%)
Query: 93 TSSDCIDTAMALLMTKSLK--LIQKGVKNLYETLKNRALEHKDTLMVGRSHGVFGEPITF 150
+S+D T M + + ++ LI + + NL L+ ++ E + +GR+H P+T
Sbjct: 164 SSNDTFPTVMHIAASLQIQNELIPE-LTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTL 222
Query: 151 GLVLALFADEIKRHLKALD---LTMEFISVG--AISGAMGNFAHAPLELEELACEFLGLK 205
G + + +++ ++ + T+ F++ G A+ + +++ E + GLK
Sbjct: 223 GQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTKPGFDVKIAEQISKETGLK 282
Query: 206 TANISNQ---VIQRDRYARLACDLALLASSCEKIAVNIRHLQRSEVYEVEEAF-STGQKG 261
N+ + D + L LA S KIA +IR+L E + G
Sbjct: 283 FQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGPRCGYHELMLPENEPG 342
Query: 262 SSAMPHKRNPILSENITGLC 281
SS MP K NP +E +T +C
Sbjct: 343 SSIMPGKVNPTQNEALTQVC 362
>pdb|1JEY|B Chain B, Crystal Structure Of The Ku Heterodimer Bound To Dna
pdb|1JEQ|B Chain B, Crystal Structure Of The Ku Heterodimer
Length = 565
Score = 26.9 bits (58), Expect = 4.6
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 373 SIVQENAMKIWEVLQQGAFKNTDENLFLNALLNDERLKKYLSEDEIK 419
SI+QE K W V+ K D LND+ + L ED I+
Sbjct: 266 SILQERVKKTWTVVDAKTLKKEDIQKETVYCLNDDDETEVLKEDIIQ 312
>pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases For Tryptophanyl-
Trna Synthetase Complexed With Tryptophanyl-5'amp
Length = 328
Score = 26.2 bits (56), Expect = 7.8
Identities = 25/126 (19%), Positives = 56/126 (43%), Gaps = 11/126 (8%)
Query: 23 YLEVEKAVVRAWNK----LGQIQDSDCEKICAKAAFNLERIKEIEKTTKHDLIAFTTCVA 78
++E+ + + +NK L I ++ K+ A+ ++ K++ K+ + A+ T +
Sbjct: 150 HIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPK-AYITLLD 208
Query: 79 ESLGEESRFFHYGITSSDCIDTAMALLMTKSLKLIQKGVKNLYETLKNRALEHKDTLMVG 138
++ E + S D+ + K K + N+Y TL +++E + G
Sbjct: 209 DAKTIEKKI------KSAVTDSEGTIRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEG 262
Query: 139 RSHGVF 144
+ +GVF
Sbjct: 263 KGYGVF 268
>pdb|1DMG|A Chain A, Crystal Structure Of Ribosomal Protein L4
Length = 225
Score = 26.2 bits (56), Expect = 7.8
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 104 LLMTKSLKLIQKGVKNLYETLKNRALEHKDTLMV 137
LL+ LKL + K+L E L+N L K TL+V
Sbjct: 122 LLVLDDLKLERPKTKSLKEILQNLQLSDKKTLIV 155
>pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|B Chain B, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|C Chain C, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|D Chain D, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|E Chain E, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|F Chain F, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site
Length = 326
Score = 26.2 bits (56), Expect = 7.8
Identities = 25/126 (19%), Positives = 56/126 (43%), Gaps = 11/126 (8%)
Query: 23 YLEVEKAVVRAWNK----LGQIQDSDCEKICAKAAFNLERIKEIEKTTKHDLIAFTTCVA 78
++E+ + + +NK L I ++ K+ A+ ++ K++ K+ + A+ T +
Sbjct: 150 HIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPK-AYITLLD 208
Query: 79 ESLGEESRFFHYGITSSDCIDTAMALLMTKSLKLIQKGVKNLYETLKNRALEHKDTLMVG 138
++ E + S D+ + K K + N+Y TL +++E + G
Sbjct: 209 DAKTIEKKI------KSAVTDSEGTIRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEG 262
Query: 139 RSHGVF 144
+ +GVF
Sbjct: 263 KGYGVF 268
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.134 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,275,385
Number of Sequences: 13198
Number of extensions: 84725
Number of successful extensions: 227
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 22
length of query: 440
length of database: 2,899,336
effective HSP length: 91
effective length of query: 349
effective length of database: 1,698,318
effective search space: 592712982
effective search space used: 592712982
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)