BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644644|ref|NP_206813.1| co-chaperone (groES)
[Helicobacter pylori 26695]
(118 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1LEP|A Chain A, Three-Dimensional Structure Of The Immu... 76 1e-15
pdb|1JH2|E Chain E, Crystal Structure Of Tetradecameric Myc... 71 3e-14
pdb|1GRU|O Chain O, Solution Structure Of Groes-Adp7-Groel-... 49 1e-07
pdb|1HF2|B Chain B, Crystal Structure Of The Bacterial Cell... 29 0.12
pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamat... 27 0.46
pdb|1TEN| Tenascin (Third Fibronectin Type Iii Repeat) 25 3.0
pdb|1ELU|A Chain A, Complex Between The Cystine C-S Lyase C... 24 3.9
pdb|1KVW| Carboxylic Ester Hydrolase, Single Mutant H48q ... 24 5.0
pdb|1IW7|C Chain C, Crystal Structure Of The Rna Polymerase... 24 5.0
pdb|2BP2| Prophospholipase A2 24 5.0
pdb|1IRB| Carboxylic Ester Hydrolase 24 5.0
pdb|1KVX| Carboxylic Ester Hydrolase, Single Mutant D99a ... 24 5.0
pdb|3BP2| Phospholipase A2 (E.C.3.1.1.4) (Phosphatide Acy... 24 5.0
pdb|1CEH| Phospholipase A2 (Pla2) (E.C.3.1.1.4) Mutant Wi... 24 5.0
pdb|4BP2| Prophospholipase A2 (Phosphatide-2-Acyl Hydrola... 24 5.0
pdb|1G4I|A Chain A, Crystal Structure Of The Bovine Pancrea... 24 5.0
pdb|1KVY| Carboxylic Ester Hydrolase, Single Mutant D49e ... 23 6.6
pdb|1BVS|B Chain B, Ruva Complexed To A Holliday Junction. ... 23 8.6
>pdb|1LEP|A Chain A, Three-Dimensional Structure Of The Immunodominant
Heat-Shock Protein Chaperonin-10 Of Mycobacterium
Leprae
pdb|1LEP|B Chain B, Three-Dimensional Structure Of The Immunodominant
Heat-Shock Protein Chaperonin-10 Of Mycobacterium
Leprae
pdb|1LEP|C Chain C, Three-Dimensional Structure Of The Immunodominant
Heat-Shock Protein Chaperonin-10 Of Mycobacterium
Leprae
pdb|1LEP|D Chain D, Three-Dimensional Structure Of The Immunodominant
Heat-Shock Protein Chaperonin-10 Of Mycobacterium
Leprae
pdb|1LEP|E Chain E, Three-Dimensional Structure Of The Immunodominant
Heat-Shock Protein Chaperonin-10 Of Mycobacterium
Leprae
pdb|1LEP|F Chain F, Three-Dimensional Structure Of The Immunodominant
Heat-Shock Protein Chaperonin-10 Of Mycobacterium
Leprae
pdb|1LEP|G Chain G, Three-Dimensional Structure Of The Immunodominant
Heat-Shock Protein Chaperonin-10 Of Mycobacterium
Leprae
Length = 99
Score = 75.9 bits (185), Expect = 1e-15
Identities = 40/95 (42%), Positives = 58/95 (60%), Gaps = 6/95 (6%)
Query: 1 MKFQPLGERVLVERLEEENKTSSGIIIPDNAKEKPLMGVVKAV--SHKISEGCK----CV 54
+K +PL +++LV+ E E T SG++IP+NAKEKP G V AV +G K V
Sbjct: 3 VKIKPLEDKILVQAGEAETMTPSGLVIPENAKEKPQEGTVVAVGPGRWDEDGAKRIPVDV 62
Query: 55 KEGDVIAFGKYKGAEIVLDGTEYMVLELEDILGIV 89
EGD++ + KY G EI +G EY++L D+L +V
Sbjct: 63 SEGDIVIYSKYGGTEIKYNGEEYLILSARDVLAVV 97
>pdb|1JH2|E Chain E, Crystal Structure Of Tetradecameric Mycobacterium
Tuberculosis Chaperonin 10 At 2.8a Resolution.
pdb|1JH2|G Chain G, Crystal Structure Of Tetradecameric Mycobacterium
Tuberculosis Chaperonin 10 At 2.8a Resolution.
pdb|1JH2|A Chain A, Crystal Structure Of Tetradecameric Mycobacterium
Tuberculosis Chaperonin 10 At 2.8a Resolution.
pdb|1JH2|B Chain B, Crystal Structure Of Tetradecameric Mycobacterium
Tuberculosis Chaperonin 10 At 2.8a Resolution.
pdb|1JH2|D Chain D, Crystal Structure Of Tetradecameric Mycobacterium
Tuberculosis Chaperonin 10 At 2.8a Resolution.
pdb|1JH2|H Chain H, Crystal Structure Of Tetradecameric Mycobacterium
Tuberculosis Chaperonin 10 At 2.8a Resolution.
pdb|1JH2|J Chain J, Crystal Structure Of Tetradecameric Mycobacterium
Tuberculosis Chaperonin 10 At 2.8a Resolution.
pdb|1JH2|C Chain C, Crystal Structure Of Tetradecameric Mycobacterium
Tuberculosis Chaperonin 10 At 2.8a Resolution.
pdb|1JH2|F Chain F, Crystal Structure Of Tetradecameric Mycobacterium
Tuberculosis Chaperonin 10 At 2.8a Resolution.
pdb|1JH2|I Chain I, Crystal Structure Of Tetradecameric Mycobacterium
Tuberculosis Chaperonin 10 At 2.8a Resolution.
pdb|1JH2|M Chain M, Crystal Structure Of Tetradecameric Mycobacterium
Tuberculosis Chaperonin 10 At 2.8a Resolution.
pdb|1JH2|N Chain N, Crystal Structure Of Tetradecameric Mycobacterium
Tuberculosis Chaperonin 10 At 2.8a Resolution.
pdb|1JH2|K Chain K, Crystal Structure Of Tetradecameric Mycobacterium
Tuberculosis Chaperonin 10 At 2.8a Resolution.
pdb|1JH2|L Chain L, Crystal Structure Of Tetradecameric Mycobacterium
Tuberculosis Chaperonin 10 At 2.8a Resolution.
pdb|1HX5|A Chain A, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1HX5|B Chain B, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1HX5|C Chain C, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1HX5|D Chain D, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1HX5|E Chain E, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1HX5|F Chain F, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1HX5|G Chain G, Crystal Structure Of M. Tuberculosis Chaperonin-10
Length = 99
Score = 71.2 bits (173), Expect = 3e-14
Identities = 39/95 (41%), Positives = 56/95 (58%), Gaps = 6/95 (6%)
Query: 1 MKFQPLGERVLVERLEEENKTSSGIIIPDNAKEKPLMGVVKAV--SHKISEGCK----CV 54
+ +PL +++LV+ E E T+SG++IPD AKEKP G V AV +G K V
Sbjct: 3 VNIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDV 62
Query: 55 KEGDVIAFGKYKGAEIVLDGTEYMVLELEDILGIV 89
EGD + + KY G EI +G EY++L D+L +V
Sbjct: 63 AEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVV 97
>pdb|1GRU|O Chain O, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|P Chain P, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|Q Chain Q, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|R Chain R, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|S Chain S, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|T Chain T, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|U Chain U, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1AON|O Chain O, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|P Chain P, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|Q Chain Q, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|R Chain R, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|S Chain S, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|T Chain T, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|U Chain U, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
Length = 97
Score = 48.9 bits (115), Expect = 1e-07
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 1 MKFQPLGERVLVERLEEENKTSSGIIIPDNAKEKPLMGVVKAVSH-KISEGCKC----VK 55
M +PL +RV+V+R E E K++ GI++ +A K G V AV + +I E + VK
Sbjct: 1 MNIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVKPLDVK 60
Query: 56 EGDVIAFGKYKGAEI-VLDGTEYMVLELEDILGIV 89
GD++ F G + +D E +++ DIL IV
Sbjct: 61 VGDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIV 95
>pdb|1HF2|B Chain B, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
pdb|1HF2|C Chain C, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
pdb|1HF2|A Chain A, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
pdb|1HF2|D Chain D, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
Length = 210
Score = 29.3 bits (64), Expect = 0.12
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 41 KAVSHKISEGCKCVKEGDVIAFGKY-KGAEIVLDGT 75
K + I G V GDVI FG KGAEI+ G+
Sbjct: 102 KVIKRNIRSGQTVVHSGDVIVFGNVNKGAEILAGGS 137
>pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase
pdb|1EA0|B Chain B, Alpha Subunit Of A. Brasilense Glutamate Synthase
Length = 1479
Score = 27.3 bits (59), Expect = 0.46
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 43 VSHKISEGCKCVKEGDVIAFGKY 65
+S E C+C+ E +++AFG Y
Sbjct: 81 ISLDAQEACRCIVETEILAFGYY 103
>pdb|1TEN| Tenascin (Third Fibronectin Type Iii Repeat)
Length = 90
Score = 24.6 bits (52), Expect = 3.0
Identities = 11/31 (35%), Positives = 18/31 (57%)
Query: 7 GERVLVERLEEENKTSSGIIIPDNAKEKPLM 37
G+R ++ E+EN+ S G + PD E L+
Sbjct: 43 GDRTTIDLTEDENQYSIGNLKPDTEYEVSLI 73
>pdb|1ELU|A Chain A, Complex Between The Cystine C-S Lyase C-Des And Its
Reaction Product Cysteine Persulfide.
pdb|1ELU|B Chain B, Complex Between The Cystine C-S Lyase C-Des And Its
Reaction Product Cysteine Persulfide.
pdb|1ELQ|A Chain A, Crystal Structure Of The Cystine C-S Lyase C-Des
pdb|1ELQ|B Chain B, Crystal Structure Of The Cystine C-S Lyase C-Des
Length = 390
Score = 24.3 bits (51), Expect = 3.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 5 PLGERVLVERLEEENKTSSGIIIPD 29
PLG R +V++LEE+ I PD
Sbjct: 339 PLGHRAIVQKLEEQRIYLRTIADPD 363
>pdb|1KVW| Carboxylic Ester Hydrolase, Single Mutant H48q Of Bovine
Pancreatic Pla2 Enzyme
Length = 123
Score = 23.9 bits (50), Expect = 5.0
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 7/32 (21%)
Query: 87 GIVGSGS-------CCHTGNHDHKHAKEHEAC 111
G+ GSG+ CC T ++ +K AK+ ++C
Sbjct: 30 GLGGSGTPVDDLDRCCQTQDNCYKQAKKLDSC 61
>pdb|1IW7|C Chain C, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|M Chain M, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
Length = 1119
Score = 23.9 bits (50), Expect = 5.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 60 IAFGKYKGAEIVLDGTEYMVLELEDILGIVGSG 92
+ FGK KG +D E VL + LG+V G
Sbjct: 924 VYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPG 956
>pdb|2BP2| Prophospholipase A2
Length = 130
Score = 23.9 bits (50), Expect = 5.0
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 7/32 (21%)
Query: 87 GIVGSGS-------CCHTGNHDHKHAKEHEAC 111
G+ GSG+ CC T ++ +K AK+ ++C
Sbjct: 37 GLGGSGTPVDDLDRCCQTHDNCYKQAKKLDSC 68
>pdb|1IRB| Carboxylic Ester Hydrolase
Length = 123
Score = 23.9 bits (50), Expect = 5.0
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 7/32 (21%)
Query: 87 GIVGSGS-------CCHTGNHDHKHAKEHEAC 111
G+ GSG+ CC T ++ +K AK+ ++C
Sbjct: 30 GLGGSGTPVDDLDRCCQTHDNCYKQAKKLDSC 61
>pdb|1KVX| Carboxylic Ester Hydrolase, Single Mutant D99a Of Bovine
Pancreatic Pla2, 1.9 A Orthorhombic Form
Length = 123
Score = 23.9 bits (50), Expect = 5.0
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 7/32 (21%)
Query: 87 GIVGSGS-------CCHTGNHDHKHAKEHEAC 111
G+ GSG+ CC T ++ +K AK+ ++C
Sbjct: 30 GLGGSGTPVDDLDRCCQTHDNCYKQAKKLDSC 61
>pdb|3BP2| Phospholipase A2 (E.C.3.1.1.4) (Phosphatide Acyl-Hydrolase) -
Transaminated Enzyme
Length = 123
Score = 23.9 bits (50), Expect = 5.0
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 7/32 (21%)
Query: 87 GIVGSGS-------CCHTGNHDHKHAKEHEAC 111
G+ GSG+ CC T ++ +K AK+ ++C
Sbjct: 30 GLGGSGTPVDDLDRCCQTHDNCYKQAKKLDSC 61
>pdb|1CEH| Phospholipase A2 (Pla2) (E.C.3.1.1.4) Mutant With Asp 99 Replaced
By Asn (D99n)
Length = 123
Score = 23.9 bits (50), Expect = 5.0
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 7/32 (21%)
Query: 87 GIVGSGS-------CCHTGNHDHKHAKEHEAC 111
G+ GSG+ CC T ++ +K AK+ ++C
Sbjct: 30 GLGGSGTPVDDLDRCCQTHDNCYKQAKKLDSC 61
>pdb|4BP2| Prophospholipase A2 (Phosphatide-2-Acyl Hydrolase) (E.C.3.1.1.4)
Length = 130
Score = 23.9 bits (50), Expect = 5.0
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 7/32 (21%)
Query: 87 GIVGSGS-------CCHTGNHDHKHAKEHEAC 111
G+ GSG+ CC T ++ +K AK+ ++C
Sbjct: 37 GLGGSGTPVDDLDRCCQTHDNCYKQAKKLDSC 68
>pdb|1G4I|A Chain A, Crystal Structure Of The Bovine Pancreatic Phospholipase
A2 At 0.97a
pdb|1UNE| Carboxylic Ester Hydrolase, 1.5 Angstrom Orthorhombic Form Of The
Bovine Recombinant Pla2
pdb|1BP2| Phospholipase A2 (E.C.3.1.1.4) (Phosphatide Acyl-Hydrolase)
pdb|1MKT| Carboxylic Ester Hydrolase, 1.72 Angstrom Trigonal Form Of The
Bovine Recombinant Pla2 Enzyme
pdb|2BPP| Phospholipase A2 (E.C.3.1.1.4)
pdb|1MKV| Carboxylic Ester Hydrolase Complex (Pla2 + Transition State Analog
Complex)
pdb|1FDK| Carboxylic Ester Hydrolase (Pla2 - Mj33 Inhibitor Complex)
pdb|1BVM|A Chain A, Solution Nmr Structure Of Bovine Pancreatic Phospholipase
A2, 20 Structures
Length = 123
Score = 23.9 bits (50), Expect = 5.0
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 7/32 (21%)
Query: 87 GIVGSGS-------CCHTGNHDHKHAKEHEAC 111
G+ GSG+ CC T ++ +K AK+ ++C
Sbjct: 30 GLGGSGTPVDDLDRCCQTHDNCYKQAKKLDSC 61
>pdb|1KVY| Carboxylic Ester Hydrolase, Single Mutant D49e Coordinated To
Calcium
Length = 123
Score = 23.5 bits (49), Expect = 6.6
Identities = 11/32 (34%), Positives = 18/32 (55%), Gaps = 7/32 (21%)
Query: 87 GIVGSGS-------CCHTGNHDHKHAKEHEAC 111
G+ GSG+ CC T + +K AK+ ++C
Sbjct: 30 GLGGSGTPVDDLDRCCQTHENCYKQAKKLDSC 61
>pdb|1BVS|B Chain B, Ruva Complexed To A Holliday Junction.
pdb|1BVS|D Chain D, Ruva Complexed To A Holliday Junction.
pdb|1BVS|F Chain F, Ruva Complexed To A Holliday Junction.
pdb|1BVS|H Chain H, Ruva Complexed To A Holliday Junction.
pdb|1BVS|A Chain A, Ruva Complexed To A Holliday Junction.
pdb|1BVS|C Chain C, Ruva Complexed To A Holliday Junction.
pdb|1BVS|E Chain E, Ruva Complexed To A Holliday Junction.
pdb|1BVS|G Chain G, Ruva Complexed To A Holliday Junction
Length = 203
Score = 23.1 bits (48), Expect = 8.6
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 35 PLMGVVKAVSHKISEGCKCVKEGDVIAFGKYKGAEIVLDGTEYMVLELEDILGIVGS 91
P + + H + + + + DV + + G I G E +VLEL D +G VG+
Sbjct: 82 PRLAMATLAVHDAAALRQALADSDVASLTRVPG--IGRRGAERIVLELADKVGPVGA 136
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.137 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 738,671
Number of Sequences: 13198
Number of extensions: 30480
Number of successful extensions: 59
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 49
Number of HSP's gapped (non-prelim): 18
length of query: 118
length of database: 2,899,336
effective HSP length: 77
effective length of query: 41
effective length of database: 1,883,090
effective search space: 77206690
effective search space used: 77206690
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)