BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644742|ref|NP_206912.1| hypothetical protein
[Helicobacter pylori 26695]
         (231 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1FS9|A  Chain A, Cytochrome C Nitrite Reductase From Wol...    25  5.8
pdb|1FS8|A  Chain A, Cytochrome C Nitrite Reductase From Wol...    25  5.8
pdb|1HHS|A  Chain A, Rna Dependent Rna Polymerase From Dsrna...    25  9.9
pdb|1HI8|A  Chain A, Rna Dependent Rna Polymerase From Dsrna...    25  9.9

>pdb|1FS9|A Chain A, Cytochrome C Nitrite Reductase From Wolinella
           Succinogenes- Azide Complex
          Length = 507

 Score = 25.4 bits (54), Expect = 5.8
 Identities = 8/38 (21%), Positives = 23/38 (60%)

Query: 145 RSLGEEISIFNPKDYDSWQERADTEILRQLQESKKYFV 182
           +++ EE + + P+ +DSW++  +++ +  + + K   V
Sbjct: 47  KAMSEEWARYYPRQFDSWKKTKESDNITDMLKEKPALV 84



>pdb|1FS8|A Chain A, Cytochrome C Nitrite Reductase From Wolinella
           Succinogenes- Sulfate Complex
 pdb|1FS7|A Chain A, Cytochrome C Nitrite Reductase From Wolinella Succinogenes
          Length = 485

 Score = 25.4 bits (54), Expect = 5.8
 Identities = 8/38 (21%), Positives = 23/38 (60%)

Query: 145 RSLGEEISIFNPKDYDSWQERADTEILRQLQESKKYFV 182
           +++ EE + + P+ +DSW++  +++ +  + + K   V
Sbjct: 25  KAMSEEWARYYPRQFDSWKKTKESDNITDMLKEKPALV 62



>pdb|1HHS|A Chain A, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
 pdb|1HHS|B Chain B, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
 pdb|1HHS|C Chain C, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
 pdb|1HHT|P Chain P, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
           Plus Template
 pdb|1HHT|Q Chain Q, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
           Plus Template
 pdb|1HHT|R Chain R, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
           Plus Template
 pdb|1HI0|P Chain P, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
           Plus Initiation Complex
 pdb|1HI0|Q Chain Q, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
           Plus Initiation Complex
 pdb|1HI0|R Chain R, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
           Plus Initiation Complex
 pdb|1HI1|A Chain A, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
           Plus Bound Ntp
 pdb|1HI1|B Chain B, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
           Plus Bound Ntp
 pdb|1HI1|C Chain C, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
           Plus Bound Ntp
          Length = 664

 Score = 24.6 bits (52), Expect = 9.9
 Identities = 14/36 (38%), Positives = 19/36 (51%), Gaps = 2/36 (5%)

Query: 72  RNAVFDQLNENTLLVLHD--KIDYRWKEASLDSPIH 105
           R A   +L    L VL D  K+ Y+W EA + + IH
Sbjct: 607 RQAGLAELTPIDLEVLADPNKLQYKWTEADVSANIH 642



>pdb|1HI8|A Chain A, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
 pdb|1HI8|B Chain B, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
          Length = 664

 Score = 24.6 bits (52), Expect = 9.9
 Identities = 14/36 (38%), Positives = 19/36 (51%), Gaps = 2/36 (5%)

Query: 72  RNAVFDQLNENTLLVLHD--KIDYRWKEASLDSPIH 105
           R A   +L    L VL D  K+ Y+W EA + + IH
Sbjct: 607 RQAGLAELTPIDLEVLADPNKLQYKWTEADVSANIH 642



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.325    0.142    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,270,111
Number of Sequences: 13198
Number of extensions: 49793
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 4
length of query: 231
length of database: 2,899,336
effective HSP length: 85
effective length of query: 146
effective length of database: 1,777,506
effective search space: 259515876
effective search space used: 259515876
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)