BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645728|ref|NP_207905.1| excinuclease ABC subunit B
(uvrB) [Helicobacter pylori 26695]
(658 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Pro... 692 0.0
pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Pro... 689 0.0
pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb... 633 0.0
pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide... 633 0.0
pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Termin... 40 6e-04
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a >gi|11513344... 40 0.001
pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein... 39 0.002
pdb|1E52|A Chain A, Solution Structure Of Escherichia Coli ... 39 0.002
pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dn... 38 0.004
pdb|1QOJ|B Chain B, Crystal Structure Of E.Coli Uvrb C-Term... 36 0.012
pdb|1D7M|A Chain A, Coiled-Coil Dimerization Domain From Co... 33 0.13
pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegi... 30 0.85
pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex 28 3.2
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of I... 28 4.2
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gt... 28 4.2
pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex ... 28 4.2
pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex 28 4.2
pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex >gi|4389380|pdb|1AN... 28 4.2
pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding... 28 4.2
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding... 28 4.2
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrol... 28 4.2
pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 ... 28 4.2
pdb|1GZS|A Chain A, Crystal Structure Of The Complex Betwee... 28 4.2
pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed... 28 4.2
pdb|1AJE| Cdc42 From Human, Nmr, 20 Structures 28 4.2
pdb|1BG2| Human Ubiquitous Kinesin Motor Domain 27 5.5
pdb|1C20|A Chain A, Solution Structure Of The Dna-Binding D... 27 5.5
pdb|1TSP| Mol_id: 1; Molecule: Tailspike-Protein; Chain: ... 27 5.5
pdb|1KQQ|A Chain A, Solution Structure Of The Dead Ringer A... 27 5.5
pdb|1QQ1|A Chain A, Tailspike Protein, Mutant E359g 27 5.5
pdb|1QA1|A Chain A, Tailspike Protein, Mutant V331g 27 5.5
pdb|1QA3|A Chain A, Tailspike Protein, Mutant A334i 27 5.5
pdb|1TYW| Structure Of Tailspike-Protein >gi|2392586|pdb|... 27 5.5
pdb|1QA2|A Chain A, Tailspike Protein, Mutant A334v 27 5.5
pdb|1QRB|A Chain A, Plasticity And Steric Strain In A Paral... 27 5.5
pdb|1CLW|A Chain A, Tailspike Protein From Phage P22, V331a... 27 5.5
pdb|1TYV| Structure Of Tailspike-Protein 27 5.5
pdb|1QRC|A Chain A, Tailspike Protein, Mutant W391a 27 5.5
pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked ... 27 5.5
pdb|1BVO|A Chain A, Dorsal Homologue Gambif1 Bound To Dna 27 7.2
pdb|1A76| Flap Endonuclease-1 From Methanococcus Jannasch... 27 7.2
pdb|1JNL|H Chain H, Crystal Structure Of Fab-Estradiol Comp... 27 9.4
pdb|1JNN|H Chain H, Crystal Structure Of Fab-Estradiol Comp... 27 9.4
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 692 bits (1786), Expect = 0.0
Identities = 357/655 (54%), Positives = 468/655 (70%), Gaps = 7/655 (1%)
Query: 4 FDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIMS 63
F L +PY P GDQPQAI L L+ +QTL+G TG+GKT+T++N+IAQ NKP L+++
Sbjct: 5 FQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIA 64
Query: 64 HNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLRL 123
HNKTL QLYSE K FFPHN VEYF+S++DYYQPE+Y+P+ D +IEKD+ IND++++LR
Sbjct: 65 HNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRH 124
Query: 124 SATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSRN 183
SAT++L DVI++ASVS YGLG+PEEY +++ ++VG + + L +LV++ Y RN
Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRN 184
Query: 184 EVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSVMLY 243
++ F RG+FR G+ V+IFPA D IR+EFFGDEIERI DAL + + V ++
Sbjct: 185 DIDF-RGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGKVLGEREHVAIF 243
Query: 244 AASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVCK 303
AS F E++ LAI++IE EL RL + Q K+LE RL+QRT +DLEM+ G C
Sbjct: 244 PASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCS 303
Query: 304 GIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSVL 363
GIENY+RH + P TP+ L DY F +FL+IVDESHV+LPQ GMY GD +RK VL
Sbjct: 304 GIENYSRHLALRPPGSTPYTLLDY---FPDDFLIIVDESHVTLPQLRGMYNGDRARKQVL 360
Query: 364 VEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGLLDP 423
V++GFRLPSALDNRPL F+EF K Q ++VSATP ELE S V EQIIRPTGLLDP
Sbjct: 361 VDHGFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSP-GVVEQIIRPTGLLDP 419
Query: 424 KFEVRDSDKQVQDLFDEIKLVVARGERVLITTLTKKMAEELCKYYAEWGLKARYMHSEID 483
+VR + Q+ DL EI+ V R ER L+TTLTKKMAE+L Y E G+K Y+HSEI
Sbjct: 420 TIDVRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIK 479
Query: 484 AIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGR 543
+ER IIR LRL ++D+L+GINLLREGLD+PEVSLVAI+DADKEGFLRSE SLIQT+GR
Sbjct: 480 TLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR 539
Query: 544 AARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELK--L 601
AARNANG V++YA IT+SM+ A + T RRA QEE+N+ H I P+TV + + + ++
Sbjct: 540 AARNANGHVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATY 599
Query: 602 RDDEIRIAKALKKDKMPKSEREKIIKELDKKMRECTKNLDFEEAMRLRDEIAQLR 656
+E + +A M K ERE++I+ L+ +M+E K LDFE A +LRD I +L+
Sbjct: 600 AAEETEMYEAKPAAAMTKQEREELIRTLEAEMKEAAKALDFERAAQLRDIIFELK 654
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 689 bits (1779), Expect = 0.0
Identities = 358/656 (54%), Positives = 469/656 (70%), Gaps = 8/656 (1%)
Query: 4 FDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIMS 63
F L +PY P GDQPQAI L L+ +QTL+G TG+GKT+T++N+IAQ NKP L+++
Sbjct: 5 FQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIA 64
Query: 64 HNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLRL 123
HNKTL QLYSE K FFPHN VEYF+S++DYYQPE+Y+P+ D +IEKD+ IND++++LR
Sbjct: 65 HNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRH 124
Query: 124 SATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSRN 183
SAT++L DVI++ASVS YGLG+PEEY +++ ++VG + + L +LV++ Y RN
Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRN 184
Query: 184 EVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERI-AVFDALEKNEIKRLDSVML 242
++ F RG+FR G+ V+IFPA D IR+EFFGDEIERI A DAL + + V +
Sbjct: 185 DIDF-RGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIRAEVDALTGKVLGEREHVAI 243
Query: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302
+ AS F E++ LAI++IE EL RL + Q K+LE RL+QRT +DLEM+ G C
Sbjct: 244 FPASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFC 303
Query: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362
GIENY+RH + P TP+ L DY F +FL+IVDESHV+LPQ GMY GD +RK V
Sbjct: 304 SGIENYSRHLALRPPGSTPYTLLDY---FPDDFLIIVDESHVTLPQLRGMYNGDRARKQV 360
Query: 363 LVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGLLD 422
LV++GFRLPSALDNRPL F+EF K Q ++VSATP ELE S V EQIIRPTGLLD
Sbjct: 361 LVDHGFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSP-GVVEQIIRPTGLLD 419
Query: 423 PKFEVRDSDKQVQDLFDEIKLVVARGERVLITTLTKKMAEELCKYYAEWGLKARYMHSEI 482
P +VR + Q+ DL EI+ V R ER L+TTLTKKMAE+L Y E G+K Y+HSEI
Sbjct: 420 PTIDVRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEI 479
Query: 483 DAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMG 542
+ER IIR LRL ++D+L+GINLLREGLD+PEVSLVAI+DADKEGFLRSE SLIQT+G
Sbjct: 480 KTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIG 539
Query: 543 RAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELK-- 600
RAARNANG V++YA IT+SM+ A + T RRA QEE+N+ H I P+TV + + + ++
Sbjct: 540 RAARNANGHVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRAT 599
Query: 601 LRDDEIRIAKALKKDKMPKSEREKIIKELDKKMRECTKNLDFEEAMRLRDEIAQLR 656
+E + +A M K ERE++I+ L+ +M+E K LDFE A +LRD I +L+
Sbjct: 600 YAAEETEMYEAKPAAAMTKQEREELIRTLEAEMKEAAKALDFERAAQLRDIIFELK 655
>pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide
Excision Repair Enzyme
Length = 665
Score = 633 bits (1632), Expect = 0.0
Identities = 335/644 (52%), Positives = 450/644 (69%), Gaps = 10/644 (1%)
Query: 12 PAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIMSHNKTLCAQ 71
P GDQP+AI L ++L++ + TL+G TG+GKT TMA +I +PAL+++ NK L AQ
Sbjct: 10 PKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQ 69
Query: 72 LYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLRLSATTSLLG 131
L +EF+ FP N VEYFIS++DYYQPE+Y+P +DL+IEKD+SIN ++ERLR S T SLL
Sbjct: 70 LAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLT 129
Query: 132 YDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSRNEVVFDRGS 191
DVIV+ASVSA YGLG+P EY ++ G+ + L +L+E+GY RN++ G
Sbjct: 130 RRDVIVVASVSAIYGLGDPREYRARNLVVERGKPYPREVLLERLLELGYQRNDIDLSPGR 189
Query: 192 FRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSVMLYAASQFAVG 251
FRA GE ++IFPAY + E IR+E FGDE+ERI+ + ++ L +L+ A+ + +
Sbjct: 190 FRAKGEVLEIFPAY-ETEPIRVELFGDEVERISQVHPVTGERLRELPGFVLFPATHY-LS 247
Query: 252 SERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVCKGIENYARH 311
E L +K IE EL R+++F+E+ ++L RLK+RT +DLEM+ G C G+ENYAR+
Sbjct: 248 PEGLEEILKEIEKELWERVRYFEERGEVLYAQRLKERTLYDLEMLRVMGTCPGVENYARY 307
Query: 312 FTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSVLVEYGFRLP 371
FTGKAP E P+ L DY F +FLV +DESHV++PQ GMY GD +RK LV+YGFRLP
Sbjct: 308 FTGKAPGEPPYTLLDY---FPEDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLP 364
Query: 372 SALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGLLDPKFEVRDSD 431
SALDNRPL+F+EF+ + Q +FVSATP EL S + V EQIIRPTGLLDP V+ ++
Sbjct: 365 SALDNRPLRFEEFLERVSQVVFVSATPGPFELAHSGR-VVEQIIRPTGLLDPLVRVKPTE 423
Query: 432 KQVQDLFDEIKLVVARGERVLITTLTKKMAEELCKYYAEWGLKARYMHSEIDAIERNHII 491
Q+ DL + I+ ARGER L+T LT +MAEEL + E G++ARY+H E+DA +R +I
Sbjct: 424 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALI 483
Query: 492 RSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRAARNANGK 551
R LRL +D L+GINLLREGLD+PEVSLVAI+DADKEGFLRSE SLIQT+GRAARNA G+
Sbjct: 484 RDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGE 543
Query: 552 VLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIRIAKA 611
V LYA +++++MQ+A E T+ RRA QE +N H ITP+TV + + ++ E
Sbjct: 544 VWLYADRVSEAMQRAIEETNRRRALQEAYNLEHGITPETVRKEVRAVIRPEGYE---EAP 600
Query: 612 LKKDKMPKSEREKIIKELDKKMRECTKNLDFEEAMRLRDEIAQL 655
L+ D + RE+ I EL+ M + + LDFE A RLRDEI L
Sbjct: 601 LEADLSGEDLRER-IAELELAMWQAAEALDFERAARLRDEIRAL 643
>pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair
Enzyme Uvrb From Thermus Thermophilus
Length = 664
Score = 633 bits (1632), Expect = 0.0
Identities = 335/644 (52%), Positives = 450/644 (69%), Gaps = 10/644 (1%)
Query: 12 PAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIMSHNKTLCAQ 71
P GDQP+AI L ++L++ + TL+G TG+GKT TMA +I +PAL+++ NK L AQ
Sbjct: 9 PKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQ 68
Query: 72 LYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLRLSATTSLLG 131
L +EF+ FP N VEYFIS++DYYQPE+Y+P +DL+IEKD+SIN ++ERLR S T SLL
Sbjct: 69 LAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLT 128
Query: 132 YDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSRNEVVFDRGS 191
DVIV+ASVSA YGLG+P EY ++ G+ + L +L+E+GY RN++ G
Sbjct: 129 RRDVIVVASVSAIYGLGDPREYRARNLVVERGKPYPREVLLERLLELGYQRNDIDLSPGR 188
Query: 192 FRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSVMLYAASQFAVG 251
FRA GE ++IFPAY + E IR+E FGDE+ERI+ + ++ L +L+ A+ + +
Sbjct: 189 FRAKGEVLEIFPAY-ETEPIRVELFGDEVERISQVHPVTGERLRELPGFVLFPATHY-LS 246
Query: 252 SERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVCKGIENYARH 311
E L +K IE EL R+++F+E+ ++L RLK+RT +DLEM+ G C G+ENYAR+
Sbjct: 247 PEGLEEILKEIEKELWERVRYFEERGEVLYAQRLKERTLYDLEMLRVMGTCPGVENYARY 306
Query: 312 FTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSVLVEYGFRLP 371
FTGKAP E P+ L DY F +FLV +DESHV++PQ GMY GD +RK LV+YGFRLP
Sbjct: 307 FTGKAPGEPPYTLLDY---FPEDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLP 363
Query: 372 SALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGLLDPKFEVRDSD 431
SALDNRPL+F+EF+ + Q +FVSATP EL S + V EQIIRPTGLLDP V+ ++
Sbjct: 364 SALDNRPLRFEEFLERVSQVVFVSATPGPFELAHSGR-VVEQIIRPTGLLDPLVRVKPTE 422
Query: 432 KQVQDLFDEIKLVVARGERVLITTLTKKMAEELCKYYAEWGLKARYMHSEIDAIERNHII 491
Q+ DL + I+ ARGER L+T LT +MAEEL + E G++ARY+H E+DA +R +I
Sbjct: 423 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALI 482
Query: 492 RSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRAARNANGK 551
R LRL +D L+GINLLREGLD+PEVSLVAI+DADKEGFLRSE SLIQT+GRAARNA G+
Sbjct: 483 RDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGE 542
Query: 552 VLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIRIAKA 611
V LYA +++++MQ+A E T+ RRA QE +N H ITP+TV + + ++ E
Sbjct: 543 VWLYADRVSEAMQRAIEETNRRRALQEAYNLEHGITPETVRKEVRAVIRPEGYE---EAP 599
Query: 612 LKKDKMPKSEREKIIKELDKKMRECTKNLDFEEAMRLRDEIAQL 655
L+ D + RE+ I EL+ M + + LDFE A RLRDEI L
Sbjct: 600 LEADLSGEDLRER-IAELELAMWQAAEALDFERAARLRDEIRAL 642
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 40.4 bits (93), Expect = 6e-04
Identities = 30/98 (30%), Positives = 49/98 (49%), Gaps = 7/98 (7%)
Query: 436 DLFDEIKLVVARGERVLITTLTKKMAEELCKYYAEWGLKARYMHSEIDAIERNHIIRSLR 495
DL+D I + A +I T++ EEL ++S++ ER+ I++ R
Sbjct: 23 DLYDSISVTQA-----VIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFR 77
Query: 496 LKEFDILIGINLLREGLDLPEVSLVAIMD--ADKEGFL 531
ILI +LL G+D+ +VSLV D A+KE ++
Sbjct: 78 SGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYI 115
>pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
Length = 394
Score = 39.7 bits (91), Expect = 0.001
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 436 DLFDEIKLVVARGERVLITTLTKKMAEELCKYYAEWGLKARYMHSEIDAIERNHIIRSLR 495
DL+D I + A +I T++ EEL ++S++ ER+ I + R
Sbjct: 252 DLYDSISVTQA-----VIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIXKEFR 306
Query: 496 LKEFDILIGINLLREGLDLPEVSLVAIMD--ADKEGFL 531
ILI +LL G+D+ +VSLV D A+KE ++
Sbjct: 307 SGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYI 344
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 38.9 bits (89), Expect = 0.002
Identities = 19/69 (27%), Positives = 37/69 (53%)
Query: 452 LITTLTKKMAEELCKYYAEWGLKARYMHSEIDAIERNHIIRSLRLKEFDILIGINLLREG 511
L+ TK+ +EL + G KA +H ++ +R +IR + K+ ILI ++ G
Sbjct: 242 LVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVXSRG 301
Query: 512 LDLPEVSLV 520
+D+ +++ V
Sbjct: 302 IDVNDLNCV 310
>pdb|1E52|A Chain A, Solution Structure Of Escherichia Coli Uvrb C-Terminal
Domain
pdb|1E52|B Chain B, Solution Structure Of Escherichia Coli Uvrb C-Terminal
Domain
Length = 63
Score = 38.5 bits (88), Expect = 0.002
Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 615 DKMPKSEREKIIKELDKKMRECTKNLDFEEAMRLRDEIAQLRTL 658
D PK+ ++KI EL+ M + +NL+FEEA ++RD++ QLR L
Sbjct: 16 DMSPKALQQKI-HELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 37.7 bits (86), Expect = 0.004
Identities = 27/125 (21%), Positives = 56/125 (44%), Gaps = 15/125 (12%)
Query: 433 QVQDLFDEIKLVVARGERVLIT--------TLTKKMAEELCKYYAEW---GLKARYMHSE 481
+V ++++ ++ V RG + I L K A E+ +Y ++ K MH
Sbjct: 563 RVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGR 622
Query: 482 IDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTM 541
+ E++ ++ +DIL+ ++ G+D+P +++ I + ++ G L Q
Sbjct: 623 LSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGL----AQLHQLR 678
Query: 542 GRAAR 546
GR R
Sbjct: 679 GRVGR 683
>pdb|1QOJ|B Chain B, Crystal Structure Of E.Coli Uvrb C-Terminal Domain, And A
Model For Uvrb-Uvrc Interaction.
pdb|1QOJ|A Chain A, Crystal Structure Of E.Coli Uvrb C-Terminal Domain, And A
Model For Uvrb-Uvrc Interaction
Length = 63
Score = 36.2 bits (82), Expect = 0.012
Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 615 DKMPKSEREKIIKELDKKMRECTKNLDFEEAMRLRDEIAQLRTL 658
D PK+ ++KI EL+ + +NL+FEEA ++RD++ QLR L
Sbjct: 16 DXSPKALQQKI-HELEGLXXQHAQNLEFEEAAQIRDQLHQLREL 58
>pdb|1D7M|A Chain A, Coiled-Coil Dimerization Domain From Cortexillin I
pdb|1D7M|B Chain B, Coiled-Coil Dimerization Domain From Cortexillin I
Length = 101
Score = 32.7 bits (73), Expect = 0.13
Identities = 19/62 (30%), Positives = 35/62 (55%), Gaps = 3/62 (4%)
Query: 596 EEELKLRDDEIRIAKALKKDKMPKSEREKIIKELDKKMRECTKNLDFEEAMRLRDEIAQL 655
E+ +K +D + +L+ + +EREK ++EL+ K+ E KNL+ E+ R+ E
Sbjct: 21 EQLIKQKDQLNSLLASLESEG---AEREKRLRELEAKLDETLKNLELEKLARMELEARLA 77
Query: 656 RT 657
+T
Sbjct: 78 KT 79
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 30.0 bits (66), Expect = 0.85
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 5/108 (4%)
Query: 11 PPAGDQPQAIEALTKS-----LKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIMSHN 65
PP Q Q A K L+ N G T SGKT+TM + +I
Sbjct: 53 PPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIA 112
Query: 66 KTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSS 113
+ +YS + H +V YF + D + + + +L + +D +
Sbjct: 113 HDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKN 160
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 28.1 bits (61), Expect = 3.2
Identities = 24/86 (27%), Positives = 40/86 (45%), Gaps = 9/86 (10%)
Query: 571 SYRRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIRIAKALKKDKMPKSERE--KIIKE 628
SY + + F ++ + P T + +L LRDD+ I K +K P + + + KE
Sbjct: 89 SYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKE 148
Query: 629 LDK-KMRECTK------NLDFEEAMR 647
+D K EC+ F+EA+R
Sbjct: 149 IDSVKYLECSALTQRGLKTVFDEAIR 174
>pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
Length = 188
Score = 27.7 bits (60), Expect = 4.2
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 570 TSYRRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIRIAKALKKDKMP--KSEREKIIK 627
+S+ K++ +I + PKT + ++ LRDD I K K + P EK+ +
Sbjct: 88 SSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLAR 147
Query: 628 ELDK-KMRECT 637
+L K EC+
Sbjct: 148 DLKAVKYVECS 158
>pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 27.7 bits (60), Expect = 4.2
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 570 TSYRRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIRIAKALKKDKMP--KSEREKIIK 627
+S+ K++ +I + PKT + ++ LRDD I K K + P EK+ +
Sbjct: 88 SSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLAR 147
Query: 628 ELDK-KMRECT 637
+L K EC+
Sbjct: 148 DLKAVKYVECS 158
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 27.7 bits (60), Expect = 4.2
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 570 TSYRRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIRIAKALKKDKMP--KSEREKIIK 627
+S+ K++ +I + PKT + ++ LRDD I K K + P EK+ +
Sbjct: 88 SSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLAR 147
Query: 628 ELDK-KMRECT 637
+L K EC+
Sbjct: 148 DLKAVKYVECS 158
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
Length = 184
Score = 27.7 bits (60), Expect = 4.2
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 570 TSYRRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIRIAKALKKDKMP--KSEREKIIK 627
+S+ K++ +I + PKT + ++ LRDD I K K + P EK+ +
Sbjct: 88 SSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLAR 147
Query: 628 ELDK-KMRECT 637
+L K EC+
Sbjct: 148 DLKAVKYVECS 158
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 27.7 bits (60), Expect = 4.2
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 570 TSYRRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIRIAKALKKDKMP--KSEREKIIK 627
+S+ K++ +I + PKT + ++ LRDD I K K + P EK+ +
Sbjct: 88 SSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLAR 147
Query: 628 ELDK-KMRECT 637
+L K EC+
Sbjct: 148 DLKAVKYVECS 158
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 27.7 bits (60), Expect = 4.2
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 570 TSYRRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIRIAKALKKDKMP--KSEREKIIK 627
+S+ K++ +I + PKT + ++ LRDD I K K + P EK+ +
Sbjct: 91 SSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLAR 150
Query: 628 ELDK-KMRECT 637
+L K EC+
Sbjct: 151 DLKAVKYVECS 161
>pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 27.7 bits (60), Expect = 4.2
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 570 TSYRRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIRIAKALKKDKMP--KSEREKIIK 627
+S+ K++ +I + PKT + ++ LRDD I K K + P EK+ +
Sbjct: 88 SSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLAR 147
Query: 628 ELDK-KMRECT 637
+L K EC+
Sbjct: 148 DLKAVKYVECS 158
>pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-Gap.
pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX
Length = 191
Score = 27.7 bits (60), Expect = 4.2
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 570 TSYRRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIRIAKALKKDKMP--KSEREKIIK 627
+S+ K++ +I + PKT + ++ LRDD I K K + P EK+ +
Sbjct: 88 SSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLAR 147
Query: 628 ELDK-KMRECT 637
+L K EC+
Sbjct: 148 DLKAVKYVECS 158
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 27.7 bits (60), Expect = 4.2
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 570 TSYRRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIRIAKALKKDKMP--KSEREKIIK 627
+S+ K++ +I + PKT + ++ LRDD I K K + P EK+ +
Sbjct: 88 SSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLAR 147
Query: 628 ELDK-KMRECT 637
+L K EC+
Sbjct: 148 DLKAVKYVECS 158
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 27.7 bits (60), Expect = 4.2
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 570 TSYRRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIRIAKALKKDKMP--KSEREKIIK 627
+S+ K++ +I + PKT + ++ LRDD I K K + P EK+ +
Sbjct: 90 SSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLAR 149
Query: 628 ELDK-KMRECT 637
+L K EC+
Sbjct: 150 DLKAVKYVECS 160
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 27.7 bits (60), Expect = 4.2
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 570 TSYRRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIRIAKALKKDKMP--KSEREKIIK 627
+S+ K++ +I + PKT + ++ LRDD I K K + P EK+ +
Sbjct: 88 SSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLAR 147
Query: 628 ELDK-KMRECT 637
+L K EC+
Sbjct: 148 DLKAVKYVECS 158
>pdb|1AJE| Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 27.7 bits (60), Expect = 4.2
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 570 TSYRRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIRIAKALKKDKMP--KSEREKIIK 627
+S+ K++ +I + PKT + ++ LRDD I K K + P EK+ +
Sbjct: 95 SSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLAR 154
Query: 628 ELDK-KMRECT 637
+L K EC+
Sbjct: 155 DLKAVKYVECS 165
>pdb|1BG2| Human Ubiquitous Kinesin Motor Domain
Length = 325
Score = 27.3 bits (59), Expect = 5.5
Identities = 18/76 (23%), Positives = 34/76 (44%)
Query: 38 GVTGSGKTYTMANIIAQTNKPALIMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQP 97
G T SGKT+TM + +I + + +YS + H +V YF + D +
Sbjct: 85 GQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRD 144
Query: 98 ESYIPRRDLFIEKDSS 113
+ + +L + +D +
Sbjct: 145 LLDVSKTNLSVHEDKN 160
>pdb|1C20|A Chain A, Solution Structure Of The Dna-Binding Domain From The Dead
Ringer Protein
Length = 128
Score = 27.3 bits (59), Expect = 5.5
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 432 KQVQDLFDEIKLVVARGERVLITTLTKKMAEELCK 466
K V DL++ LV+ARG L+ + KK+ +E+ K
Sbjct: 49 KSVLDLYELYNLVIARGG--LVDVINKKLWQEIIK 81
>pdb|1TSP| Mol_id: 1; Molecule: Tailspike-Protein; Chain: Null; Domain:
Residues 109 - 666; Synonym: Tsp
Length = 559
Score = 27.3 bits (59), Expect = 5.5
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 20 IEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIMSHNKTLC 69
I L+K+L + Y + G GSG YT I+ + A+ + N C
Sbjct: 457 IHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDC 506
>pdb|1KQQ|A Chain A, Solution Structure Of The Dead Ringer Arid-Dna Complex
Length = 139
Score = 27.3 bits (59), Expect = 5.5
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 432 KQVQDLFDEIKLVVARGERVLITTLTKKMAEELCK 466
K V DL++ LV+ARG L+ + KK+ +E+ K
Sbjct: 51 KSVLDLYELYNLVIARGG--LVDVINKKLWQEIIK 83
>pdb|1QQ1|A Chain A, Tailspike Protein, Mutant E359g
Length = 559
Score = 27.3 bits (59), Expect = 5.5
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 20 IEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIMSHNKTLC 69
I L+K+L + Y + G GSG YT I+ + A+ + N C
Sbjct: 457 IHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDC 506
>pdb|1QA1|A Chain A, Tailspike Protein, Mutant V331g
Length = 554
Score = 27.3 bits (59), Expect = 5.5
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 20 IEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIMSHNKTLC 69
I L+K+L + Y + G GSG YT I+ + A+ + N C
Sbjct: 452 IHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDC 501
>pdb|1QA3|A Chain A, Tailspike Protein, Mutant A334i
Length = 554
Score = 27.3 bits (59), Expect = 5.5
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 20 IEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIMSHNKTLC 69
I L+K+L + Y + G GSG YT I+ + A+ + N C
Sbjct: 452 IHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDC 501
>pdb|1TYW| Structure Of Tailspike-Protein
pdb|1TYU| Structure Of Tailspike-Protein
pdb|1TYX| Title Of Tailspike-Protein
Length = 543
Score = 27.3 bits (59), Expect = 5.5
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 20 IEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIMSHNKTLC 69
I L+K+L + Y + G GSG YT I+ + A+ + N C
Sbjct: 441 IHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDC 490
>pdb|1QA2|A Chain A, Tailspike Protein, Mutant A334v
Length = 554
Score = 27.3 bits (59), Expect = 5.5
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 20 IEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIMSHNKTLC 69
I L+K+L + Y + G GSG YT I+ + A+ + N C
Sbjct: 452 IHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDC 501
>pdb|1QRB|A Chain A, Plasticity And Steric Strain In A Parallel Beta-Helix:
Rational Mutations In P22 Tailspike Protein
Length = 559
Score = 27.3 bits (59), Expect = 5.5
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 20 IEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIMSHNKTLC 69
I L+K+L + Y + G GSG YT I+ + A+ + N C
Sbjct: 457 IHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDC 506
>pdb|1CLW|A Chain A, Tailspike Protein From Phage P22, V331a Mutant
Length = 554
Score = 27.3 bits (59), Expect = 5.5
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 20 IEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIMSHNKTLC 69
I L+K+L + Y + G GSG YT I+ + A+ + N C
Sbjct: 452 IHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDC 501
>pdb|1TYV| Structure Of Tailspike-Protein
Length = 542
Score = 27.3 bits (59), Expect = 5.5
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 20 IEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIMSHNKTLC 69
I L+K+L + Y + G GSG YT I+ + A+ + N C
Sbjct: 440 IHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDC 489
>pdb|1QRC|A Chain A, Tailspike Protein, Mutant W391a
Length = 559
Score = 27.3 bits (59), Expect = 5.5
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 20 IEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIMSHNKTLC 69
I L+K+L + Y + G GSG YT I+ + A+ + N C
Sbjct: 457 IHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDC 506
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 27.3 bits (59), Expect = 5.5
Identities = 18/76 (23%), Positives = 34/76 (44%)
Query: 38 GVTGSGKTYTMANIIAQTNKPALIMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQP 97
G T SGKT+TM + +I + + +YS + H +V YF + D +
Sbjct: 85 GQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRD 144
Query: 98 ESYIPRRDLFIEKDSS 113
+ + +L + +D +
Sbjct: 145 LLDVSKTNLSVHEDKN 160
>pdb|1BVO|A Chain A, Dorsal Homologue Gambif1 Bound To Dna
Length = 175
Score = 26.9 bits (58), Expect = 7.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 635 ECTKNLDFEEAMRLRDEI 652
+C K D EEA+RLR EI
Sbjct: 103 QCVKKKDVEEALRLRQEI 120
>pdb|1A76| Flap Endonuclease-1 From Methanococcus Jannaschii
pdb|1A77| Flap Endonuclease-1 From Methanococcus Jannaschii
Length = 326
Score = 26.9 bits (58), Expect = 7.2
Identities = 15/42 (35%), Positives = 24/42 (56%), Gaps = 1/42 (2%)
Query: 614 KDKMPKSEREKIIKELDKKMRECTKNLDFEEAMRLRDEIAQL 655
K+K K RE + ++ + KM+E K DFEEA + ++ L
Sbjct: 87 KEKTRKVRRE-MKEKAELKMKEAIKKEDFEEAAKYAKRVSYL 127
>pdb|1JNL|H Chain H, Crystal Structure Of Fab-Estradiol Complexes
Length = 216
Score = 26.6 bits (57), Expect = 9.4
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 285 LKQRTEHDLEMISATGVCKGIENYARHFTGKA 316
+KQR E L+ I GI Y F GKA
Sbjct: 37 VKQRPEQGLDWIGRINPANGISKYDPRFQGKA 68
>pdb|1JNN|H Chain H, Crystal Structure Of Fab-Estradiol Complexes
Length = 214
Score = 26.6 bits (57), Expect = 9.4
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 285 LKQRTEHDLEMISATGVCKGIENYARHFTGKA 316
+KQR E L+ I GI Y F GKA
Sbjct: 37 VKQRPEQGLDWIGRINPANGISKYDPRFQGKA 68
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.137 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,587,925
Number of Sequences: 13198
Number of extensions: 148568
Number of successful extensions: 530
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 484
Number of HSP's gapped (non-prelim): 43
length of query: 658
length of database: 2,899,336
effective HSP length: 94
effective length of query: 564
effective length of database: 1,658,724
effective search space: 935520336
effective search space used: 935520336
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)