BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645729|ref|NP_207906.1| hypothetical protein
[Helicobacter pylori 26695]
(228 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3BTA|A Chain A, Crystal Structure Of Botulinum Neurotox... 32 0.047
pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botuli... 31 0.14
pdb|1G8X|A Chain A, Structure Of A Genetically Engineered M... 27 2.0
pdb|1QOY|A Chain A, E.Coli Hemolysin E (Hlye, Clya, Shea) 26 4.4
pdb|1I1I|P Chain P, Neurolysin (Endopeptidase 24.16) Crysta... 25 7.5
pdb|1M6J|A Chain A, Crystal Structure Of Triosephosphate Is... 25 7.5
pdb|1FXK|C Chain C, Crystal Structure Of Archaeal Prefoldin... 25 9.7
pdb|1CG3|A Chain A, Structure Of The Mutant (R143l) Of Aden... 25 9.7
pdb|1CG1|A Chain A, Structure Of The Mutant (K16q) Of Adeny... 25 9.7
pdb|1CG4|A Chain A, Structure Of The Mutant (R303l) Of Aden... 25 9.7
pdb|1KKF|A Chain A, Complex Of E. Coli Adenylosuccinate Syn... 25 9.7
pdb|1ADE|A Chain A, Structure Of Adenylosuccinate Synthetas... 25 9.7
>pdb|3BTA|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype A
Length = 1295
Score = 32.3 bits (72), Expect = 0.047
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 129 IKKLENQLIETTTRLLTSYQIFLNNARDSANNQITANKTESLEAL-NQA---KTSANNEI 184
++ ++N L + + Y+ + N N QI + + EAL NQA K N +
Sbjct: 691 VQTIDNALSKRNEKWDEVYKYIVTNWLAKVNTQIDLIRKKMKEALENQAEATKAIINYQY 750
Query: 185 TANQTQALTNINEAKENANNQITENKTQAITNINEAKNQ 223
+ NIN ++ ++++ E+ +A+ NIN+ NQ
Sbjct: 751 NQYTEEEKNNINFNIDDLSSKLNESINKAMININKFLNQ 789
>pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With Doxorubicin
pdb|1EPW|A Chain A, Crystal Structure Of Clostridium Neurotoxin Type B
pdb|1F31|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With A Trisaccharide
Length = 1290
Score = 30.8 bits (68), Expect = 0.14
Identities = 26/109 (23%), Positives = 43/109 (38%), Gaps = 4/109 (3%)
Query: 118 LNANTENIKSEIKKLENQLIETTTRLLTSYQIFLNNARDSANNQITANKTESLEALNQAK 177
L + +N IK ++N L + + Y + + + N Q K +ALN
Sbjct: 667 LESYIDNKNKIIKTIDNALTKRNEKWSDMYGLIVAQWLSTVNTQFYTIKEGMYKALNYQA 726
Query: 178 TSANNEITANQT----QALTNINEAKENANNQITENKTQAITNINEAKN 222
+ I + +NIN + N+++ E QAI NIN N
Sbjct: 727 QALEEIIKYRYNIYSEKEKSNINIDFNDINSKLNEGINQAIDNINNFIN 775
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 26.9 bits (58), Expect = 2.0
Identities = 30/180 (16%), Positives = 68/180 (37%), Gaps = 28/180 (15%)
Query: 59 LLSLDFFKNANEIDSSLRNSIEWLNNAGESLKTKMKEYEGFFSDFNTSMRTNEQE----- 113
L S DF + + S + E+ ++ E E ++ T +R ++E
Sbjct: 789 LESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAP 848
Query: 114 -------VSATLNA-------NTENIKSEIKKLE---------NQLIETTTRLLTSYQIF 150
+ +T +A + E ++ E+K+ + N++++ T+ ++
Sbjct: 849 AGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVY 908
Query: 151 LNNARDSANNQITANKTESLEALNQAKTSANNEITANQTQALTNINEAKENANNQITENK 210
L + + K ++LEA + S + ++ L + E N ++TE K
Sbjct: 909 LGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERK 968
>pdb|1QOY|A Chain A, E.Coli Hemolysin E (Hlye, Clya, Shea)
Length = 318
Score = 25.8 bits (55), Expect = 4.4
Identities = 22/76 (28%), Positives = 34/76 (43%), Gaps = 6/76 (7%)
Query: 89 LKTKMKEYEGFFSDF-NTSMRTNEQEVSATLNANTENIKSEIKKLENQLIETTTRLLTSY 147
LK K+K + FF+ NT + N+ +A L TE K E + TTR Y
Sbjct: 226 LKNKLKSVQNFFTTLSNTVKQANKDIDAAKLKLTTEIAAIGEIKTETE----TTRFYVDY 281
Query: 148 -QIFLNNARDSANNQI 162
+ L+ +++A I
Sbjct: 282 DDLMLSLLKEAAKKMI 297
>pdb|1I1I|P Chain P, Neurolysin (Endopeptidase 24.16) Crystal Structure
Length = 681
Score = 25.0 bits (53), Expect = 7.5
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 12 LEITEQPEVKEITNELLKQLQNALNS---NSL-FSEQVELSLKGIVRILEVLLSLDFFKN 67
+ + E ++++I E + L+ ++ N L SE + +K + + + L +DF KN
Sbjct: 124 VHLQETCDLEKIKPEARRYLEKSIKMGKRNGLHLSEHIRNEIKSMKKRMSELC-IDFNKN 182
Query: 68 ANEIDSSL 75
NE D+SL
Sbjct: 183 LNEDDTSL 190
>pdb|1M6J|A Chain A, Crystal Structure Of Triosephosphate Isomerase From
Entamoeba Histolytica
pdb|1M6J|B Chain B, Crystal Structure Of Triosephosphate Isomerase From
Entamoeba Histolytica
Length = 261
Score = 25.0 bits (53), Expect = 7.5
Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 37 SNSLFSEQVELSLKGIVRILEVLLSLDFFKNANEIDSSLRNSIEWLNNA--GESLKTKMK 94
SN +E+V++++ ++++ + + + AN+ + + ++ +NNA E+ K +
Sbjct: 112 SNEQVAEKVKVAIDAGLKVIACIGETEAQRIANQTEEVVAAQLKAINNAISKEAWKNIIL 171
Query: 95 EYEGFFS--DFNTSMRTNEQEVSATLNA-NTENIKSEI 129
YE ++ T+ QEV + TENI E+
Sbjct: 172 AYEPVWAIGTGKTATPDQAQEVHQYIRKWMTENISKEV 209
>pdb|1FXK|C Chain C, Crystal Structure Of Archaeal Prefoldin (Gimc)
Length = 133
Score = 24.6 bits (52), Expect = 9.7
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 17/114 (14%)
Query: 26 ELLKQLQNALNSNSLFSEQVELSLKGI--VRILEVLLSLDFFKNANE----------IDS 73
E++ QL + L +Q+E I + ILE LS K+ +E I +
Sbjct: 5 EIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKA 64
Query: 74 SLRNSIEWLNNAGESLKTKMKEYEGFFSDFNTSMRTNEQEVSATLNANTENIKS 127
L+++ E + + G + K F D S+++ + E+ +TL EN+++
Sbjct: 65 ELKDTSEVIMSVGAGVAIKKN-----FEDAMESIKSQKNELESTLQKMGENLRA 113
>pdb|1CG3|A Chain A, Structure Of The Mutant (R143l) Of Adenylosuccinate
Synthetase From E. Coli Complexed With Hadacidin, Gdp,
6- Phosphoryl-Imp, And Mg2+
Length = 431
Score = 24.6 bits (52), Expect = 9.7
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 8/42 (19%)
Query: 125 IKSEIKKLENQLIETTTRLLTS--------YQIFLNNARDSA 158
+ E+K+LE++ I RLL S Y + L+NAR+ A
Sbjct: 79 LMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKA 120
>pdb|1CG1|A Chain A, Structure Of The Mutant (K16q) Of Adenylosuccinate
Synthetase From E. Coli Complexed With Hadacidin, Gdp,
6- Phosphoryl-Imp, And Mg2+
Length = 431
Score = 24.6 bits (52), Expect = 9.7
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 8/42 (19%)
Query: 125 IKSEIKKLENQLIETTTRLLTS--------YQIFLNNARDSA 158
+ E+K+LE++ I RLL S Y + L+NAR+ A
Sbjct: 79 LMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKA 120
>pdb|1CG4|A Chain A, Structure Of The Mutant (R303l) Of Adenylosuccinate
Synthetase From E. Coli Complexed With, Gdp,
6-Phosphoryl- Imp, And Mg2+
Length = 431
Score = 24.6 bits (52), Expect = 9.7
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 8/42 (19%)
Query: 125 IKSEIKKLENQLIETTTRLLTS--------YQIFLNNARDSA 158
+ E+K+LE++ I RLL S Y + L+NAR+ A
Sbjct: 79 LMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKA 120
>pdb|1KKF|A Chain A, Complex Of E. Coli Adenylosuccinate Synthetase With Imp,
Hadacidin, Pyrophosphate, And Mg
pdb|1KKB|A Chain A, Complex Of Escherichia Coli Adenylosuccinate Synthetase
With Imp And Hadacidin
pdb|1KJX|A Chain A, Imp Complex Of E. Coli Adenylosuccinate Synthetase
Length = 432
Score = 24.6 bits (52), Expect = 9.7
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 8/42 (19%)
Query: 125 IKSEIKKLENQLIETTTRLLTS--------YQIFLNNARDSA 158
+ E+K+LE++ I RLL S Y + L+NAR+ A
Sbjct: 80 LMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKA 121
>pdb|1ADE|A Chain A, Structure Of Adenylosuccinate Synthetase Ph7 At 25 Degrees
Celsius
pdb|1ADE|B Chain B, Structure Of Adenylosuccinate Synthetase Ph7 At 25 Degrees
Celsius
pdb|1QF5|A Chain A, Design, Synthesis, And X-Ray Crystal Structure Of An
Enzyme Bound Bisubstrate Hybrid Inhibitor Of
Adenylosuccinate Synthetase
pdb|1QF4|A Chain A, Design, Synthesis, And X-Ray Crystal Structure Of An
Enzyme Bound Bisubstrate Hybrid Inhibitor Of
Adenylosuccinate Synthetase
pdb|1HOO|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From E. Coli At Ph6.5 And 25
Degrees Celsius
pdb|1HOO|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From E. Coli At Ph6.5 And 25
Degrees Celsius
pdb|1HOP|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At
Ph6.5 And 25 Degrees Celsius
pdb|1HOP|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At
Ph6.5 And 25 Degrees Celsius
pdb|1HON|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At
Ph6.5 And 25 Degree Celsius
pdb|1HON|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At
Ph6.5 And 25 Degree Celsius
pdb|1CIB|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With Gdp, Imp, Hadacidin, And No3
pdb|1ADI|A Chain A, Structure Of Adenylosuccinate Synthetase At Ph6.5 And 25
Degrees Celsius
pdb|1ADI|B Chain B, Structure Of Adenylosuccinate Synthetase At Ph6.5 And 25
Degrees Celsius
pdb|1CH8|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With A Stringent Effector, Ppg2':3'p
pdb|1GIM| Crystal Structure Of Adenylosuccinate Synthetase From Escherichia
Coli Complexed With Gdp, Imp, Hadacidin, No3-, And Mg2+.
Data Collected At 100k (Ph6.5)
pdb|1CG0|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With Hadacidin, Gdp, 6-Phosphoryl-Imp, And
Mg2+
pdb|1NHT| Entrapment Of 6-Thiophosphoryl-Imp In The Active Site Of
Crystalline Adenylosuccinate Synthetase From Escherichia
Coli Data Collected At 100k
pdb|1SON| Adenylosuccinate Synthetase In Complex With The Natural Feedback
Inhibitor Amp
pdb|1SOO| Adenylosuccinate Synthetase Inhibited By Hydantocidin
5'-Monophosphate
pdb|1JUY| Refined Crystal Structure Of Adenylosuccinate Synthetase From
Escherichia Coli Complexed With Hydantocidin
5'-Phosphate Gdp, Hpo4(2-), Mg2+, And Hadacidin
pdb|1GIN| Crystal Structure Of Adenylosuccinate Synthetase From Escherichia
Coli Complexed With Gdp, Imp, Hadacidin, No3-, And Mg2+.
Data Collected At 298k (Ph6.5).
pdb|1KSZ| Entrapment Of 6-Thiophosphoryl-Imp In The Active Site Of
Crystalline Adenylosuccinate Synthetase From Escherichia
Coli, Data Collected At 298k
Length = 431
Score = 24.6 bits (52), Expect = 9.7
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 8/42 (19%)
Query: 125 IKSEIKKLENQLIETTTRLLTS--------YQIFLNNARDSA 158
+ E+K+LE++ I RLL S Y + L+NAR+ A
Sbjct: 79 LMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKA 120
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.304 0.120 0.301
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,016,346
Number of Sequences: 13198
Number of extensions: 34429
Number of successful extensions: 44
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 12
length of query: 228
length of database: 2,899,336
effective HSP length: 85
effective length of query: 143
effective length of database: 1,777,506
effective search space: 254183358
effective search space used: 254183358
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 52 (24.6 bits)