BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645731|ref|NP_207908.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
         (256 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1KLX|A  Chain A, Helicobacter Pylori Cysteine Rich Prote...    51  1e-07
pdb|3PVA|A  Chain A, Penicillin V Acylase From B. Sphaericus...    27  2.3
pdb|2PVA|A  Chain A, Oxidized Penicillin V Acylase From B. S...    27  2.3
pdb|1A17|    Tetratricopeptide Repeats Of Protein Phosphatase 5    26  5.2
pdb|1YEB|    Cytochrome C (B-2036 Composite, Reduced State)        25  6.7
pdb|1STM|A  Chain A, Satellite Panicum Mosaic Virus >gi|1942...    25  6.7

>pdb|1KLX|A Chain A, Helicobacter Pylori Cysteine Rich Protein B (Hcpb)
          Length = 138

 Score = 51.2 bits (121), Expect = 1e-07
 Identities = 30/69 (43%), Positives = 40/69 (57%)

Query: 68  LGIMYENGRGVPKDEKKAAEYFQKAVDNDIPRGYNNLGVMYKEGRGVPKDEKKAVEYFRI 127
           LG  YENG+ V KD +KAA+Y+ KA   +   G   LG     G+GV K+EK+AV+ F  
Sbjct: 63  LGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122

Query: 128 ATEKGYTNA 136
           A   G  +A
Sbjct: 123 ACRLGSEDA 131



 Score = 48.5 bits (114), Expect = 7e-07
 Identities = 29/98 (29%), Positives = 49/98 (49%)

Query: 81  DEKKAAEYFQKAVDNDIPRGYNNLGVMYKEGRGVPKDEKKAVEYFRIATEKGYTNAYINL 140
           +++K  +Y  KA + +   G   LG  Y+ G+ V KD +KA +Y+  A      +  + L
Sbjct: 40  NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLIL 99

Query: 141 GIMYMEGRGVPSNYVKATECFRKAMHKGNVEAYILLGD 178
           G     G+GV  N  +A + F KA   G+ +A  +L +
Sbjct: 100 GYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNN 137



 Score = 41.2 bits (95), Expect = 1e-04
 Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 15/141 (10%)

Query: 111 GRGVPKDEKKAVEYFRIATEKGYTNAYINLGIMYMEGRGVPSNYVKATECFR---KAMHK 167
           G  V KD KKA++Y+  A E       ++L         V ++ +   + F+   KA   
Sbjct: 4   GGTVKKDLKKAIQYYVKACELNEMFGCLSL---------VSNSQINKQKLFQYLSKACEL 54

Query: 168 GNVEAYILLGDIYYSGNDQLGIEPDKDKAIVYYKMAADMSSSRAYEGLAESYQYGLGVEK 227
            +      LGD Y +G     ++ D  KA  YY  A  ++       L      G GV K
Sbjct: 55  NSGNGCRFLGDFYENGKY---VKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVK 111

Query: 228 DKKKAEEYMQKACDFDIDKNC 248
           ++K+A +  +KAC    +  C
Sbjct: 112 NEKQAVKTFEKACRLGSEDAC 132



 Score = 36.2 bits (82), Expect = 0.004
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 41  YNNKEYERAASFYKSAIKNGEPLAYVLLGIMYENGRGVPKDEKKAAEYFQKA 92
           Y  K+  +AA +Y  A    +    ++LG     G+GV K+EK+A + F+KA
Sbjct: 72  YVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123



 Score = 30.0 bits (66), Expect = 0.27
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 6/61 (9%)

Query: 189 IEPDKDKAIVYYKMAADMSSSRAYEGLAESYQYGLGVEKDKKKAEEYMQKACDFDIDKNC 248
           ++ D  KAI YY  A +++       L  + Q       +K+K  +Y+ KAC+ +    C
Sbjct: 7   VKKDLKKAIQYYVKACELNEMFGCLSLVSNSQI------NKQKLFQYLSKACELNSGNGC 60

Query: 249 K 249
           +
Sbjct: 61  R 61



>pdb|3PVA|A Chain A, Penicillin V Acylase From B. Sphaericus
 pdb|3PVA|B Chain B, Penicillin V Acylase From B. Sphaericus
 pdb|3PVA|C Chain C, Penicillin V Acylase From B. Sphaericus
 pdb|3PVA|D Chain D, Penicillin V Acylase From B. Sphaericus
 pdb|3PVA|E Chain E, Penicillin V Acylase From B. Sphaericus
 pdb|3PVA|F Chain F, Penicillin V Acylase From B. Sphaericus
 pdb|3PVA|G Chain G, Penicillin V Acylase From B. Sphaericus
 pdb|3PVA|H Chain H, Penicillin V Acylase From B. Sphaericus
          Length = 335

 Score = 26.9 bits (58), Expect = 2.3
 Identities = 20/62 (32%), Positives = 31/62 (49%), Gaps = 7/62 (11%)

Query: 171 EAYILLG---DIYYSGNDQLG----IEPDKDKAIVYYKMAADMSSSRAYEGLAESYQYGL 223
           EA I+LG    ++Y+  D  G    IEPDK    ++ K    M++S  YE    + +  +
Sbjct: 131 EANIILGFAPPLHYTFTDASGESIVIEPDKTGITIHRKTIGVMTNSPGYEWHQTNLRAYI 190

Query: 224 GV 225
           GV
Sbjct: 191 GV 192



>pdb|2PVA|A Chain A, Oxidized Penicillin V Acylase From B. Sphaericus
 pdb|2PVA|B Chain B, Oxidized Penicillin V Acylase From B. Sphaericus
 pdb|2PVA|C Chain C, Oxidized Penicillin V Acylase From B. Sphaericus
 pdb|2PVA|D Chain D, Oxidized Penicillin V Acylase From B. Sphaericus
          Length = 345

 Score = 26.9 bits (58), Expect = 2.3
 Identities = 20/62 (32%), Positives = 31/62 (49%), Gaps = 7/62 (11%)

Query: 171 EAYILLG---DIYYSGNDQLG----IEPDKDKAIVYYKMAADMSSSRAYEGLAESYQYGL 223
           EA I+LG    ++Y+  D  G    IEPDK    ++ K    M++S  YE    + +  +
Sbjct: 141 EANIILGFAPPLHYTFTDASGESIVIEPDKTGITIHRKTIGVMTNSPGYEWHQTNLRAYI 200

Query: 224 GV 225
           GV
Sbjct: 201 GV 202



>pdb|1A17|   Tetratricopeptide Repeats Of Protein Phosphatase 5
          Length = 166

 Score = 25.8 bits (55), Expect = 5.2
 Identities = 22/85 (25%), Positives = 35/85 (40%), Gaps = 19/85 (22%)

Query: 24 AEHLEQKRNYIYKGEEAYNNKEYERAASFYKSAIK---------NGEPLAYVLLG----I 70
          AE L+ + N  +K       K+YE A  FY  AI+             LAY+        
Sbjct: 13 AEELKTQANDYFKA------KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYA 66

Query: 71 MYENGRGVPKDEKKAAEYFQKAVDN 95
          + +  R +  D+K    Y+++A  N
Sbjct: 67 LGDATRAIELDKKYIKGYYRRAASN 91



>pdb|1YEB|   Cytochrome C (B-2036 Composite, Reduced State)
          Length = 108

 Score = 25.4 bits (54), Expect = 6.7
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 11/76 (14%)

Query: 166 HKGNVEAYILLGDIYYSGNDQLGIEPDKDKAIVYYKMAADMSSSRAYEGLAESYQYGLGV 225
           H G V+ Y      Y   N    ++ D+D    Y      +++ + Y    +    GL  
Sbjct: 44  HSGQVKGYS-----YTDANINKNVKWDEDSMSEY------LTNPKKYIPGTKMAFGGLKK 92

Query: 226 EKDKKKAEEYMQKACD 241
           EKD+     Y++KAC+
Sbjct: 93  EKDRNDLITYLKKACE 108



>pdb|1STM|A Chain A, Satellite Panicum Mosaic Virus
 pdb|1STM|B Chain B, Satellite Panicum Mosaic Virus
 pdb|1STM|C Chain C, Satellite Panicum Mosaic Virus
 pdb|1STM|D Chain D, Satellite Panicum Mosaic Virus
 pdb|1STM|E Chain E, Satellite Panicum Mosaic Virus
          Length = 157

 Score = 25.4 bits (54), Expect = 6.7
 Identities = 15/36 (41%), Positives = 20/36 (54%), Gaps = 1/36 (2%)

Query: 129 TEKGYTNAYINLGIMYMEGRGVPSNYVKATECFRKA 164
           TE+  T   I+ G++  +G   PSN V  T CFR A
Sbjct: 116 TEEAETILAID-GLVSTKGANAPSNTVIVTGCFRLA 150



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.314    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,572,994
Number of Sequences: 13198
Number of extensions: 72458
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 116
Number of HSP's gapped (non-prelim): 14
length of query: 256
length of database: 2,899,336
effective HSP length: 86
effective length of query: 170
effective length of database: 1,764,308
effective search space: 299932360
effective search space used: 299932360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)