BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645734|ref|NP_207911.1| hypothetical protein
[Helicobacter pylori 26695]
(144 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JKW| Structure Of Cyclin Mcs2 28 0.31
pdb|1KXU| Cyclin H, A Positive Regulatory Subunit Of Cdk ... 28 0.31
pdb|1BHL| Cacodylated Catalytic Domain Of Hiv-1 Integrase 27 1.2
pdb|1BI4|B Chain B, Catalytic Domain Of Hiv-1 Integrase 27 1.2
pdb|2ITG| Catalytic Domain Of Hiv-1 Integrase: Ordered Ac... 27 1.2
pdb|1K99|A Chain A, Solution Structure Of The First Hmg Box... 27 1.2
pdb|1BL3|C Chain C, Catalytic Domain Of Hiv-1 Integrase >gi... 27 1.2
pdb|1B0N|A Chain A, Sinr ProteinSINI PROTEIN COMPLEX 25 2.6
pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta >g... 25 2.6
pdb|1CII| Colicin Ia 25 2.6
pdb|1UTR|A Chain A, Uteroglobin-Pcb Complex (Reduced Form) ... 24 5.9
pdb|6GSV|A Chain A, First-Sphere And Second-Sphere Electros... 24 5.9
pdb|6GSW|A Chain A, First-Sphere And Second-Sphere Electros... 24 5.9
pdb|5FWG|A Chain A, Tetra-(5-Fluorotryptophanyl)-Glutathion... 24 5.9
pdb|1CCD| Clara Cell 17-Kda Protein 24 5.9
pdb|6GSX|A Chain A, First-Sphere And Second-Sphere Electros... 24 5.9
pdb|2GST|A Chain A, Glutathione S-Transferase (Isoenzyme 3-... 24 5.9
pdb|6GSU|A Chain A, First-Sphere And Second-Sphere Electros... 24 5.9
pdb|1I6V|B Chain B, Thermus Aquaticus Core Rna Polymerase-R... 24 7.7
pdb|1HQM|B Chain B, Crystal Structure Of Thermus Aquaticus ... 24 7.7
pdb|1KQL|A Chain A, Crystal Structure Of The C-Terminal Reg... 24 7.7
pdb|1L9U|A Chain A, Thermus Aquaticus Rna Polymerase Holoen... 24 7.7
>pdb|1JKW| Structure Of Cyclin Mcs2
Length = 323
Score = 28.5 bits (62), Expect = 0.31
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 62 MLSLKNQFPDKEMSELLDEKTSDFLNQMRESLFVLKEKNLIYSRMAFAVSEFYSS 116
++ LK ++P E E+L + DFLN++ L + L+Y+ A++ SS
Sbjct: 171 LIDLKTRYPILENPEILRKTADDFLNRI-----ALTDAYLLYTPSQIALTAILSS 220
>pdb|1KXU| Cyclin H, A Positive Regulatory Subunit Of Cdk Activating Kinase
Length = 333
Score = 28.5 bits (62), Expect = 0.31
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 62 MLSLKNQFPDKEMSELLDEKTSDFLNQMRESLFVLKEKNLIYSRMAFAVSEFYSS 116
++ LK ++P E E+L + DFLN++ L + L+Y+ A++ SS
Sbjct: 181 LIDLKTRYPILENPEILRKTADDFLNRI-----ALTDAYLLYTPSQIALTAILSS 230
>pdb|1BHL| Cacodylated Catalytic Domain Of Hiv-1 Integrase
Length = 151
Score = 26.6 bits (57), Expect = 1.2
Identities = 12/53 (22%), Positives = 26/53 (48%)
Query: 8 LENALKQLKELIDLTERDIRDIKLAKHTEIFERNHQKQLAIQAFEKEKANIDV 60
+E+ K+LK++I +K A +F NH+++ I + + +D+
Sbjct: 95 IESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDI 147
>pdb|1BI4|B Chain B, Catalytic Domain Of Hiv-1 Integrase
Length = 160
Score = 26.6 bits (57), Expect = 1.2
Identities = 12/53 (22%), Positives = 26/53 (48%)
Query: 8 LENALKQLKELIDLTERDIRDIKLAKHTEIFERNHQKQLAIQAFEKEKANIDV 60
+E+ K+LK++I +K A +F NH+++ I + + +D+
Sbjct: 102 IESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDI 154
>pdb|2ITG| Catalytic Domain Of Hiv-1 Integrase: Ordered Active Site In The
F185h Construct
Length = 163
Score = 26.6 bits (57), Expect = 1.2
Identities = 12/53 (22%), Positives = 26/53 (48%)
Query: 8 LENALKQLKELIDLTERDIRDIKLAKHTEIFERNHQKQLAIQAFEKEKANIDV 60
+E+ K+LK++I +K A +F NH+++ I + + +D+
Sbjct: 102 IESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDI 154
>pdb|1K99|A Chain A, Solution Structure Of The First Hmg Box In Human
Upstream Binding Factor
Length = 99
Score = 26.6 bits (57), Expect = 1.2
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 8 LENALKQLKELIDLTERDIRDIKLAKHTEIFERNHQKQLAIQAFEKEKANIDVQMLSLKN 67
+E K K +++ D+ I K+ E+ E+ K IQ F++EK + + +
Sbjct: 23 MEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKY--IQDFQREKQEFERNLARFRE 80
Query: 68 QFPD 71
PD
Sbjct: 81 DHPD 84
>pdb|1BL3|C Chain C, Catalytic Domain Of Hiv-1 Integrase
pdb|1BI4|C Chain C, Catalytic Domain Of Hiv-1 Integrase
pdb|1BL3|B Chain B, Catalytic Domain Of Hiv-1 Integrase
pdb|1BL3|A Chain A, Catalytic Domain Of Hiv-1 Integrase
pdb|1BI4|A Chain A, Catalytic Domain Of Hiv-1 Integrase
Length = 160
Score = 26.6 bits (57), Expect = 1.2
Identities = 12/53 (22%), Positives = 26/53 (48%)
Query: 8 LENALKQLKELIDLTERDIRDIKLAKHTEIFERNHQKQLAIQAFEKEKANIDV 60
+E+ K+LK++I +K A +F NH+++ I + + +D+
Sbjct: 102 IESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDI 154
>pdb|1B0N|A Chain A, Sinr ProteinSINI PROTEIN COMPLEX
Length = 111
Score = 25.4 bits (54), Expect = 2.6
Identities = 15/43 (34%), Positives = 23/43 (52%)
Query: 39 ERNHQKQLAIQAFEKEKANIDVQMLSLKNQFPDKEMSELLDEK 81
ERN Q +IQ EK A +DV + +L ++ + E LD +
Sbjct: 35 ERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSE 77
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 25.4 bits (54), Expect = 2.6
Identities = 21/89 (23%), Positives = 41/89 (45%), Gaps = 14/89 (15%)
Query: 9 ENALKQLKELIDLTERDIRDI------KLAKHTEIFERNHQKQLAIQAFEKEKANIDVQM 62
E + +LK L + +E +I+DI K ++ R+ + A + +KE N +Q
Sbjct: 119 EKQIAELKALKESSESNIKDIKKKLEAKRLDRIQVXXRSTSDKAAQERLKKEINNSHIQE 178
Query: 63 LSLKNQFPDKEMSELLDEKTSDFLNQMRE 91
+ + +LL EKT+ + ++ E
Sbjct: 179 V--------VQTIKLLTEKTARYQQKLEE 199
>pdb|1CII| Colicin Ia
Length = 602
Score = 25.4 bits (54), Expect = 2.6
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 41 NHQKQL--AIQAFEKEKANIDVQMLSLKNQFPDKEMSELLDEKTSDFLNQMRESLFVLKE 98
N QK A+ A KEK NI Q+ + + +++ + + T D +N E L + E
Sbjct: 384 NEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRKQDELKATKDAINFTTEFLKSVSE 443
Query: 99 K 99
K
Sbjct: 444 K 444
>pdb|1UTR|A Chain A, Uteroglobin-Pcb Complex (Reduced Form)
pdb|1UTR|B Chain B, Uteroglobin-Pcb Complex (Reduced Form)
Length = 96
Score = 24.3 bits (51), Expect = 5.9
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 6 SHLENALKQLKELIDLTERDIRDIKLAKHTE 36
S L+NA QLK L+D ++ R I + K TE
Sbjct: 53 SDLQNAGTQLKRLVDTLPQETR-INIVKLTE 82
>pdb|6GSV|A Chain A, First-Sphere And Second-Sphere Electrostatic Effects In
The Active Site Of A Class Mu Glutathione Transferase
pdb|6GSV|B Chain B, First-Sphere And Second-Sphere Electrostatic Effects In
The Active Site Of A Class Mu Glutathione Transferase
Length = 217
Score = 24.3 bits (51), Expect = 5.9
Identities = 16/53 (30%), Positives = 25/53 (46%), Gaps = 4/53 (7%)
Query: 52 EKEKANIDVQMLSLKNQFPDKEMSELLDEKTSDFLNQMRESLFVLKEKNLIYS 104
E+E+ D+ ++NQ D M ++ DF Q E L + EK +YS
Sbjct: 90 EEERIRADI----VENQVMDNRMQLIMLCYNPDFEKQKPEFLKTIPEKMKLYS 138
>pdb|6GSW|A Chain A, First-Sphere And Second-Sphere Electrostatic Effects In
The Active Site Of A Class Mu Glutathione Transferase
pdb|6GSW|B Chain B, First-Sphere And Second-Sphere Electrostatic Effects In
The Active Site Of A Class Mu Glutathione Transferase
Length = 217
Score = 24.3 bits (51), Expect = 5.9
Identities = 16/53 (30%), Positives = 25/53 (46%), Gaps = 4/53 (7%)
Query: 52 EKEKANIDVQMLSLKNQFPDKEMSELLDEKTSDFLNQMRESLFVLKEKNLIYS 104
E+E+ D+ ++NQ D M ++ DF Q E L + EK +YS
Sbjct: 90 EEERIRADI----VENQVMDNRMQLIMLCYNPDFEKQKPEFLKTIPEKMKLYS 138
>pdb|5FWG|A Chain A, Tetra-(5-Fluorotryptophanyl)-Glutathione Transferase
pdb|5FWG|B Chain B, Tetra-(5-Fluorotryptophanyl)-Glutathione Transferase
Length = 217
Score = 24.3 bits (51), Expect = 5.9
Identities = 16/53 (30%), Positives = 25/53 (46%), Gaps = 4/53 (7%)
Query: 52 EKEKANIDVQMLSLKNQFPDKEMSELLDEKTSDFLNQMRESLFVLKEKNLIYS 104
E+E+ D+ ++NQ D M ++ DF Q E L + EK +YS
Sbjct: 90 EEERIRADI----VENQVMDNRMQLIMLCYNPDFEKQKPEFLKTIPEKMKLYS 138
>pdb|1CCD| Clara Cell 17-Kda Protein
Length = 77
Score = 24.3 bits (51), Expect = 5.9
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 6 SHLENALKQLKELIDLTERDIRDIKLAKHTE 36
S L+NA QLK L+D ++ R I + K TE
Sbjct: 34 SDLQNAGTQLKRLVDTLPQETR-INIVKLTE 63
>pdb|6GSX|A Chain A, First-Sphere And Second-Sphere Electrostatic Effects In
The Active Site Of A Class Mu Glutathione Transferase
pdb|6GSX|B Chain B, First-Sphere And Second-Sphere Electrostatic Effects In
The Active Site Of A Class Mu Glutathione Transferase
pdb|6GSY|A Chain A, First-Sphere And Second-Sphere Electrostatic Effects In
The Active Site Of A Class Mu Glutathione Transferase
pdb|6GSY|B Chain B, First-Sphere And Second-Sphere Electrostatic Effects In
The Active Site Of A Class Mu Glutathione Transferase
Length = 217
Score = 24.3 bits (51), Expect = 5.9
Identities = 16/53 (30%), Positives = 25/53 (46%), Gaps = 4/53 (7%)
Query: 52 EKEKANIDVQMLSLKNQFPDKEMSELLDEKTSDFLNQMRESLFVLKEKNLIYS 104
E+E+ D+ ++NQ D M ++ DF Q E L + EK +YS
Sbjct: 90 EEERIRADI----VENQVMDNRMQLIMLCYNPDFEKQKPEFLKTIPEKMKLYS 138
>pdb|2GST|A Chain A, Glutathione S-Transferase (Isoenzyme 3-3) (E.C.2.5.1.18)
Complex With
(9s,10s)-9-(S-Glutathionyl)-10-Hydroxy-9,10-
Dihrophenanthrene
pdb|2GST|B Chain B, Glutathione S-Transferase (Isoenzyme 3-3) (E.C.2.5.1.18)
Complex With
(9s,10s)-9-(S-Glutathionyl)-10-Hydroxy-9,10-
Dihrophenanthrene
pdb|3GST|A Chain A, Glutathione S-Transferase (Isoenzyme 3-3) (E.C.2.5.1.18)
Complex With
(9r,10r)-9-(S-Glutathionyl)-10-Hydroxy-9,10-
Dihrophenanthrene
pdb|3GST|B Chain B, Glutathione S-Transferase (Isoenzyme 3-3) (E.C.2.5.1.18)
Complex With
(9r,10r)-9-(S-Glutathionyl)-10-Hydroxy-9,10-
Dihrophenanthrene
pdb|4GST|A Chain A, Glutathione S-Transferase (Isoenzyme 3-3) (E.C.2.5.1.18)
Complex With 1-(S-(Glutathionyl)-2,4,6-
Trinitrocyclohexadienate Anion
pdb|4GST|B Chain B, Glutathione S-Transferase (Isoenzyme 3-3) (E.C.2.5.1.18)
Complex With 1-(S-(Glutathionyl)-2,4,6-
Trinitrocyclohexadienate Anion
pdb|5GST|A Chain A, Glutathione S-Transferase (Isoenzyme 3-3) (E.C.2.5.1.18)
Complex With 1-(S-(Glutathionyl)-2,4-Dinitrobenzene
pdb|5GST|B Chain B, Glutathione S-Transferase (Isoenzyme 3-3) (E.C.2.5.1.18)
Complex With 1-(S-(Glutathionyl)-2,4-Dinitrobenzene
pdb|6GST|A Chain A, First-Sphere And Second-Sphere Electrostatic Effects In
The Active Site Of A Class Mu Glutathione Transferase
pdb|6GST|B Chain B, First-Sphere And Second-Sphere Electrostatic Effects In
The Active Site Of A Class Mu Glutathione Transferase
pdb|1GSB|A Chain A, Glutathione S-Transferase (Isoenzyme 3-3) (E.C.2.5.1.18)
Complex With Glutathione (Form B Crystal)
pdb|1GSB|B Chain B, Glutathione S-Transferase (Isoenzyme 3-3) (E.C.2.5.1.18)
Complex With Glutathione (Form B Crystal)
pdb|1GSB|C Chain C, Glutathione S-Transferase (Isoenzyme 3-3) (E.C.2.5.1.18)
Complex With Glutathione (Form B Crystal)
pdb|1GSB|D Chain D, Glutathione S-Transferase (Isoenzyme 3-3) (E.C.2.5.1.18)
Complex With Glutathione (Form B Crystal)
pdb|1GSC|A Chain A, Glutathione S-Transferase (Isoenzyme 3-3) (E.C.2.5.1.18)
Complex With Glutathione (Form C Crystal)
pdb|1GSC|B Chain B, Glutathione S-Transferase (Isoenzyme 3-3) (E.C.2.5.1.18)
Complex With Glutathione (Form C Crystal)
pdb|1GSC|C Chain C, Glutathione S-Transferase (Isoenzyme 3-3) (E.C.2.5.1.18)
Complex With Glutathione (Form C Crystal)
pdb|1GSC|D Chain D, Glutathione S-Transferase (Isoenzyme 3-3) (E.C.2.5.1.18)
Complex With Glutathione (Form C Crystal)
Length = 217
Score = 24.3 bits (51), Expect = 5.9
Identities = 16/53 (30%), Positives = 25/53 (46%), Gaps = 4/53 (7%)
Query: 52 EKEKANIDVQMLSLKNQFPDKEMSELLDEKTSDFLNQMRESLFVLKEKNLIYS 104
E+E+ D+ ++NQ D M ++ DF Q E L + EK +YS
Sbjct: 90 EEERIRADI----VENQVMDNRMQLIMLCYNPDFEKQKPEFLKTIPEKMKLYS 138
>pdb|6GSU|A Chain A, First-Sphere And Second-Sphere Electrostatic Effects In
The Active Site Of A Class Mu Glutathione Transferase
pdb|6GSU|B Chain B, First-Sphere And Second-Sphere Electrostatic Effects In
The Active Site Of A Class Mu Glutathione Transferase
Length = 217
Score = 24.3 bits (51), Expect = 5.9
Identities = 16/53 (30%), Positives = 25/53 (46%), Gaps = 4/53 (7%)
Query: 52 EKEKANIDVQMLSLKNQFPDKEMSELLDEKTSDFLNQMRESLFVLKEKNLIYS 104
E+E+ D+ ++NQ D M ++ DF Q E L + EK +YS
Sbjct: 90 EEERIRADI----VENQVMDNRMQLIMLCYNPDFEKQKPEFLKTIPEKMKLYS 138
>pdb|1I6V|B Chain B, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex
pdb|1I6V|A Chain A, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex
Length = 314
Score = 23.9 bits (50), Expect = 7.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 3 VLHSHLENALKQLKELIDLTERDIRDI 29
VLHS E ++ ++ L+ L +D+R+I
Sbjct: 264 VLHSLKEEGIESVRALLALNLKDLRNI 290
>pdb|1HQM|B Chain B, Crystal Structure Of Thermus Aquaticus Core Rna
Polymerase- Includes Complete Structure With Side-Chains
(Except For Disordered Regions)-Further Refined From
Original Deposition-Contains Additional Sequence
Information
pdb|1HQM|A Chain A, Crystal Structure Of Thermus Aquaticus Core Rna
Polymerase- Includes Complete Structure With Side-Chains
(Except For Disordered Regions)-Further Refined From
Original Deposition-Contains Additional Sequence
Information
Length = 313
Score = 23.9 bits (50), Expect = 7.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 3 VLHSHLENALKQLKELIDLTERDIRDI 29
VLHS E ++ ++ L+ L +D+R+I
Sbjct: 263 VLHSLKEEGIESVRALLALNLKDLRNI 289
>pdb|1KQL|A Chain A, Crystal Structure Of The C-Terminal Region Of Striated
Muscle Alpha-Tropomyosin At 2.7 Angstrom Resolution
pdb|1KQL|B Chain B, Crystal Structure Of The C-Terminal Region Of Striated
Muscle Alpha-Tropomyosin At 2.7 Angstrom Resolution
Length = 56
Score = 23.9 bits (50), Expect = 7.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 7 HLENALKQLKELIDLTERDIRDIKL 31
HLEN + +LK+L+D E ++ KL
Sbjct: 13 HLENEVARLKKLVDDLEDELYAQKL 37
>pdb|1L9U|A Chain A, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|B Chain B, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|J Chain J, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|K Chain K, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9Z|A Chain A, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
pdb|1L9Z|B Chain B, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
Length = 314
Score = 23.9 bits (50), Expect = 7.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 3 VLHSHLENALKQLKELIDLTERDIRDI 29
VLHS E ++ ++ L+ L +D+R+I
Sbjct: 264 VLHSLKEEGIESVRALLALNLKDLRNI 290
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.134 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 676,242
Number of Sequences: 13198
Number of extensions: 21054
Number of successful extensions: 85
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 22
length of query: 144
length of database: 2,899,336
effective HSP length: 80
effective length of query: 64
effective length of database: 1,843,496
effective search space: 117983744
effective search space used: 117983744
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)