BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645736|ref|NP_207913.1| hypothetical protein
[Helicobacter pylori 26695]
(76 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1MWS|A Chain A, Structure Of Nitrocefin Acyl-Penicillin... 24 3.5
pdb|1MWX|A Chain A, Structure Of Penicillin Binding Protein... 24 3.5
pdb|1CDY| Structure Of T-Cell Surface Glycoprotein Cd4 Mu... 23 4.5
pdb|1CDI| Cd4 (D1d2 Fragment) Type Ii Crystal Form 23 4.5
pdb|1CDU| Structure Of T-Cell Surface Glycoprotein Cd4 Mu... 23 4.5
pdb|1CDH| Cd4 (D1d2 Fragment) Type I Crystal Form >gi|209... 23 4.5
pdb|1WIO|A Chain A, Structure Of T-Cell Surface Glycoprotei... 23 4.5
pdb|1MWR|A Chain A, Structure Of Semet Penicillin Binding P... 23 4.5
pdb|1G9M|C Chain C, Hiv-1 Hxbc2 Gp120 Envelope Glycoprotein... 23 4.5
pdb|3CD4| Cd4 (N-Terminal Fragment Consisting Of Residues... 23 4.5
pdb|1TMF|1 Chain 1, Theiler's Murine Encephalomyelitis Viru... 23 7.7
pdb|1TME|1 Chain 1, Theiler's Murine Encephalomyelitis Viru... 23 7.7
>pdb|1MWS|A Chain A, Structure Of Nitrocefin Acyl-Penicillin Binding Protein 2a
From Methicillin Resistant Staphylococcus Aureus Strain
27r At 2.00 A Resolution.
pdb|1MWS|B Chain B, Structure Of Nitrocefin Acyl-Penicillin Binding Protein 2a
From Methicillin Resistant Staphylococcus Aureus Strain
27r At 2.00 A Resolution.
pdb|1MWT|A Chain A, Structure Of Penicillin G Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.45 A Resolution.
pdb|1MWT|B Chain B, Structure Of Penicillin G Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.45 A Resolution.
pdb|1MWU|A Chain A, Structure Of Methicillin Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.60 A Resolution.
pdb|1MWU|B Chain B, Structure Of Methicillin Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.60 A Resolution
Length = 646
Score = 23.9 bits (50), Expect = 3.5
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 25 NYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKIN 60
N KRV+ K++ N +DR + E+ +K++
Sbjct: 69 NKKRVDAQYKIKTNYGNIDRNVQFNFVKEDGMWKLD 104
>pdb|1MWX|A Chain A, Structure Of Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
At 1.80 A Resolution.
pdb|1MWX|B Chain B, Structure Of Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
At 1.80 A Resolution
Length = 646
Score = 23.9 bits (50), Expect = 3.5
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 25 NYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKIN 60
N KRV+ K++ N +DR + E+ +K++
Sbjct: 69 NKKRVDAQYKIKTNYGNIDRNVQFNFVKEDGMWKLD 104
>pdb|1CDY| Structure Of T-Cell Surface Glycoprotein Cd4 Mutant With Gly 47
Replaced By Ser
Length = 178
Score = 23.5 bits (49), Expect = 4.5
Identities = 9/43 (20%), Positives = 24/43 (54%)
Query: 24 GNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKINLHETSH 66
GN+ + KN K+E+++ + V + K+ ++ + + + +H
Sbjct: 65 GNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTH 107
>pdb|1CDI| Cd4 (D1d2 Fragment) Type Ii Crystal Form
Length = 179
Score = 23.5 bits (49), Expect = 4.5
Identities = 9/43 (20%), Positives = 24/43 (54%)
Query: 24 GNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKINLHETSH 66
GN+ + KN K+E+++ + V + K+ ++ + + + +H
Sbjct: 66 GNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTH 108
>pdb|1CDU| Structure Of T-Cell Surface Glycoprotein Cd4 Mutant With Phe 43
Replaced By Val
Length = 178
Score = 23.5 bits (49), Expect = 4.5
Identities = 9/43 (20%), Positives = 24/43 (54%)
Query: 24 GNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKINLHETSH 66
GN+ + KN K+E+++ + V + K+ ++ + + + +H
Sbjct: 65 GNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTH 107
>pdb|1CDH| Cd4 (D1d2 Fragment) Type I Crystal Form
pdb|1CDJ| Structure Of T-Cell Surface Glycoprotein Cd4
pdb|1JL4|D Chain D, Crystal Structure Of The Human Cd4 N-Terminal Two Domain
Fragment Complexed To A Class Ii Mhc Molecule
Length = 178
Score = 23.5 bits (49), Expect = 4.5
Identities = 9/43 (20%), Positives = 24/43 (54%)
Query: 24 GNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKINLHETSH 66
GN+ + KN K+E+++ + V + K+ ++ + + + +H
Sbjct: 65 GNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTH 107
>pdb|1WIO|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4, Tetragonal
Crystal Form
pdb|1WIO|B Chain B, Structure Of T-Cell Surface Glycoprotein Cd4, Tetragonal
Crystal Form
pdb|1WIP|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4, Monoclinic
Crystal Form
pdb|1WIP|B Chain B, Structure Of T-Cell Surface Glycoprotein Cd4, Monoclinic
Crystal Form
pdb|1WIQ|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4, Trigonal
Crystal Form
pdb|1WIQ|B Chain B, Structure Of T-Cell Surface Glycoprotein Cd4, Trigonal
Crystal Form
Length = 363
Score = 23.5 bits (49), Expect = 4.5
Identities = 9/43 (20%), Positives = 24/43 (54%)
Query: 24 GNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKINLHETSH 66
GN+ + KN K+E+++ + V + K+ ++ + + + +H
Sbjct: 65 GNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTH 107
>pdb|1MWR|A Chain A, Structure Of Semet Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
(Trigonal Form) At 2.45 A Resolution.
pdb|1MWR|B Chain B, Structure Of Semet Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
(Trigonal Form) At 2.45 A Resolution
Length = 646
Score = 23.5 bits (49), Expect = 4.5
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 25 NYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKIN 60
N KRV+ K++ N +DR + E+ +K++
Sbjct: 69 NKKRVDAQYKIKTNYGNIDRNVQFNFVKEDGXWKLD 104
>pdb|1G9M|C Chain C, Hiv-1 Hxbc2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1GC1|C Chain C, Hiv-1 Gp120 Core Complexed With Cd4 And A Neutralizing
Human Antibody
pdb|1G9N|C Chain C, Hiv-1 Yu2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
Length = 185
Score = 23.5 bits (49), Expect = 4.5
Identities = 9/43 (20%), Positives = 24/43 (54%)
Query: 24 GNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKINLHETSH 66
GN+ + KN K+E+++ + V + K+ ++ + + + +H
Sbjct: 65 GNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTH 107
>pdb|3CD4| Cd4 (N-Terminal Fragment Consisting Of Residues 1-182)
Length = 182
Score = 23.5 bits (49), Expect = 4.5
Identities = 9/43 (20%), Positives = 24/43 (54%)
Query: 24 GNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKINLHETSH 66
GN+ + KN K+E+++ + V + K+ ++ + + + +H
Sbjct: 65 GNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTH 107
>pdb|1TMF|1 Chain 1, Theiler's Murine Encephalomyelitis Virus Coat Protein
(Bean Strain)
Length = 276
Score = 22.7 bits (47), Expect = 7.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 34 KVENNEAALDRVAEIKKAIEN 54
KV N++A++D VAE K EN
Sbjct: 9 KVSNDDASVDFVAEPVKLPEN 29
>pdb|1TME|1 Chain 1, Theiler's Murine Encephalomyelitis Virus (Da Strain)
Length = 274
Score = 22.7 bits (47), Expect = 7.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 34 KVENNEAALDRVAEIKKAIEN 54
KV N++A++D VAE K EN
Sbjct: 9 KVSNDDASVDFVAEPVKLPEN 29
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.309 0.126 0.323
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 373,971
Number of Sequences: 13198
Number of extensions: 10707
Number of successful extensions: 28
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 12
length of query: 76
length of database: 2,899,336
effective HSP length: 52
effective length of query: 24
effective length of database: 2,213,040
effective search space: 53112960
effective search space used: 53112960
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.7 bits)