BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644743|ref|NP_206913.1| hypothetical protein
[Helicobacter pylori 26695]
(98 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|5PTD| Phosphatidylinositol-Specific Phospholipase C M... 27 0.36
pdb|4PTD| Phosphatidylinositol-Specific Phospholipase C M... 27 0.36
pdb|7PTD| Phosphatidylinositol-Specific Phospholipase C M... 27 0.36
pdb|1GYM| Phosphatidylinositol-Specific Phospholipase C I... 27 0.36
pdb|6PTD| Phosphatidylinositol-Specific Phospholipase C M... 27 0.36
pdb|3PTD| Phosphatidylinositol-Specific Phospholipase C M... 27 0.36
pdb|2PTD| Phosphatidylinositol-Specific Phospholipase C M... 25 1.0
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel... 25 1.4
pdb|1FKX| Murine Adenosine Deaminase (D296a) 23 3.9
pdb|1B16|A Chain A, Alcohol Dehydrogenase From Drosophila L... 23 6.7
pdb|1EF0|A Chain A, Crystal Structure Of Pi-Scei Miniprecur... 22 8.8
pdb|1LWS|A Chain A, Crystal Structure Of The Intein Homing ... 22 8.8
pdb|1B91|A Chain A, Nmr Structure Of A Histone Acetyltranfe... 22 8.8
pdb|1JVA|A Chain A, Crystal Structure Of The Vma1-Derived E... 22 8.8
pdb|1VDE|A Chain A, Pi-Scei, A Homing Endonuclease With Pro... 22 8.8
>pdb|5PTD| Phosphatidylinositol-Specific Phospholipase C Mutant H32a
Length = 298
Score = 26.9 bits (58), Expect = 0.36
Identities = 15/56 (26%), Positives = 27/56 (47%), Gaps = 1/56 (1%)
Query: 4 NTHYTPNFTQLQTLNNINNDATIKDRNQVEQDLQQSNIQDGFSQDNAKNAPDFDRL 59
N Y P+ T N N + T++D+ +V D + +I+D + N+ D + L
Sbjct: 174 NNFYWPDNETFTTTVNQNANVTVQDKYKVSYDEKVKSIKDTM-DETMNNSEDLNHL 228
>pdb|4PTD| Phosphatidylinositol-Specific Phospholipase C Mutant D274n
Length = 298
Score = 26.9 bits (58), Expect = 0.36
Identities = 15/56 (26%), Positives = 27/56 (47%), Gaps = 1/56 (1%)
Query: 4 NTHYTPNFTQLQTLNNINNDATIKDRNQVEQDLQQSNIQDGFSQDNAKNAPDFDRL 59
N Y P+ T N N + T++D+ +V D + +I+D + N+ D + L
Sbjct: 174 NNFYWPDNETFTTTVNQNANVTVQDKYKVSYDEKVKSIKDTM-DETMNNSEDLNHL 228
>pdb|7PTD| Phosphatidylinositol-Specific Phospholipase C Mutant R163k
Length = 298
Score = 26.9 bits (58), Expect = 0.36
Identities = 15/56 (26%), Positives = 27/56 (47%), Gaps = 1/56 (1%)
Query: 4 NTHYTPNFTQLQTLNNINNDATIKDRNQVEQDLQQSNIQDGFSQDNAKNAPDFDRL 59
N Y P+ T N N + T++D+ +V D + +I+D + N+ D + L
Sbjct: 174 NNFYWPDNETFTTTVNQNANVTVQDKYKVSYDEKVKSIKDTM-DETMNNSEDLNHL 228
>pdb|1GYM| Phosphatidylinositol-Specific Phospholipase C In Complex With
Glucosamine-(Alpha-1-6)-Myo-Inositol
pdb|1PTG| Phosphatidylinositol-Specific Phospholipase C In Complex With
Myo-Inositol
pdb|1PTD| Phosphatidylinositol-Specific Phospholipase C
Length = 298
Score = 26.9 bits (58), Expect = 0.36
Identities = 15/56 (26%), Positives = 27/56 (47%), Gaps = 1/56 (1%)
Query: 4 NTHYTPNFTQLQTLNNINNDATIKDRNQVEQDLQQSNIQDGFSQDNAKNAPDFDRL 59
N Y P+ T N N + T++D+ +V D + +I+D + N+ D + L
Sbjct: 174 NNFYWPDNETFTTTVNQNANVTVQDKYKVSYDEKVKSIKDTM-DETMNNSEDLNHL 228
>pdb|6PTD| Phosphatidylinositol-Specific Phospholipase C Mutant H32l
Length = 298
Score = 26.9 bits (58), Expect = 0.36
Identities = 15/56 (26%), Positives = 27/56 (47%), Gaps = 1/56 (1%)
Query: 4 NTHYTPNFTQLQTLNNINNDATIKDRNQVEQDLQQSNIQDGFSQDNAKNAPDFDRL 59
N Y P+ T N N + T++D+ +V D + +I+D + N+ D + L
Sbjct: 174 NNFYWPDNETFTTTVNQNANVTVQDKYKVSYDEKVKSIKDTM-DETMNNSEDLNHL 228
>pdb|3PTD| Phosphatidylinositol-Specific Phospholipase C Mutant D274s
Length = 298
Score = 26.9 bits (58), Expect = 0.36
Identities = 15/56 (26%), Positives = 27/56 (47%), Gaps = 1/56 (1%)
Query: 4 NTHYTPNFTQLQTLNNINNDATIKDRNQVEQDLQQSNIQDGFSQDNAKNAPDFDRL 59
N Y P+ T N N + T++D+ +V D + +I+D + N+ D + L
Sbjct: 174 NNFYWPDNETFTTTVNQNANVTVQDKYKVSYDEKVKSIKDTM-DETMNNSEDLNHL 228
>pdb|2PTD| Phosphatidylinositol-Specific Phospholipase C Mutant D198e
Length = 298
Score = 25.4 bits (54), Expect = 1.0
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 4 NTHYTPNFTQLQTLNNINNDATIKDRNQVEQDLQQSNIQDGFSQDNAKNAPDFDRL 59
N Y P+ T N N + T++++ +V D + +I+D + N+ D + L
Sbjct: 174 NNFYWPDNETFTTTVNQNANVTVQEKYKVSYDEKVKSIKDTM-DETMNNSEDLNHL 228
>pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With
1,8-Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With
1,8-Diaminooctane
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With
1,8-Diaminooctane
pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
Length = 472
Score = 25.0 bits (53), Expect = 1.4
Identities = 13/40 (32%), Positives = 20/40 (49%), Gaps = 1/40 (2%)
Query: 55 DFDRLQALNAINNDGEIKDRSQVEKNLASGENIPEIYSSL 94
DFD L A N DG + D V+K + +++ E+ L
Sbjct: 88 DFDYL-AQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKL 126
>pdb|1FKX| Murine Adenosine Deaminase (D296a)
Length = 349
Score = 23.5 bits (49), Expect = 3.9
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 5 THYTPNFTQLQTLNNINNDATIKDRNQVEQDLQQSNIQDGFSQDNAK 51
TH F + ++N DA + ++ ++ D Q + GF+++ K
Sbjct: 274 THAVVRFKNDKANYSLNTDAPLIFKSTLDTDYQMTKKDMGFTEEEFK 320
>pdb|1B16|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis Ternary
Complex With Nad-3-Pentanone
pdb|1B16|B Chain B, Alcohol Dehydrogenase From Drosophila Lebanonensis Ternary
Complex With Nad-3-Pentanone
pdb|1B2L|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis:
Ternary Complex With Nad-Cyclohexanone
pdb|1A4U|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis
pdb|1A4U|B Chain B, Alcohol Dehydrogenase From Drosophila Lebanonensis
pdb|1B15|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis Ternary
Complex With Nad-Acetone
pdb|1B15|B Chain B, Alcohol Dehydrogenase From Drosophila Lebanonensis Ternary
Complex With Nad-Acetone
pdb|1B14|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis Binary
Complex With Nad+
pdb|1B14|B Chain B, Alcohol Dehydrogenase From Drosophila Lebanonensis Binary
Complex With Nad+
Length = 254
Score = 22.7 bits (47), Expect = 6.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 56 FDRLQALNAINNDGEIKDRSQVEKNLA 82
FD+L+ ++ + N I D Q+E+ +A
Sbjct: 79 FDQLKTVDILINGAGILDDHQIERTIA 105
>pdb|1EF0|A Chain A, Crystal Structure Of Pi-Scei Miniprecursor
pdb|1EF0|B Chain B, Crystal Structure Of Pi-Scei Miniprecursor
Length = 462
Score = 22.3 bits (46), Expect = 8.8
Identities = 14/64 (21%), Positives = 26/64 (39%), Gaps = 8/64 (12%)
Query: 26 IKDRNQVEQDLQQSNIQDGFSQDNAKNAPDFDRLQALNA--------INNDGEIKDRSQV 77
I++ E L + + GF +D KN P F + I++DG + D +
Sbjct: 280 IRNNLNTENPLWDAIVGLGFLKDGVKNIPSFLSTDNIGTRETFLAGLIDSDGYVTDEHGI 339
Query: 78 EKNL 81
+ +
Sbjct: 340 KATI 343
>pdb|1LWS|A Chain A, Crystal Structure Of The Intein Homing Endonuclease
Pi-Scei Bound To Its Recognition Sequence
pdb|1LWT|A Chain A, Crystal Structure Of The Intein Homing Endonuclease
Pi-Scei Bound To Its Substrate Dna (Ca2+ Free)
Length = 454
Score = 22.3 bits (46), Expect = 8.8
Identities = 14/64 (21%), Positives = 26/64 (39%), Gaps = 8/64 (12%)
Query: 26 IKDRNQVEQDLQQSNIQDGFSQDNAKNAPDFDRLQALNA--------INNDGEIKDRSQV 77
I++ E L + + GF +D KN P F + I++DG + D +
Sbjct: 276 IRNNLNTENPLWDAIVGLGFLKDGVKNIPSFLSTDNIGTRETFLAGLIDSDGYVTDEHGI 335
Query: 78 EKNL 81
+ +
Sbjct: 336 KATI 339
>pdb|1B91|A Chain A, Nmr Structure Of A Histone Acetyltranferase Bromodomain
Length = 118
Score = 22.3 bits (46), Expect = 8.8
Identities = 13/56 (23%), Positives = 28/56 (49%), Gaps = 2/56 (3%)
Query: 26 IKDRNQVEQDLQQSNIQDGFSQDNAKNAPDFDRLQALNAINN--DGEIKDRSQVEK 79
+K+R V + L +++Q F+ NAP+ + + N + +IK+ ++K
Sbjct: 63 LKNRYYVSKKLFMADLQRVFTNCKEYNAPESEYYKCANILEKFFFSKIKEAGLIDK 118
>pdb|1JVA|A Chain A, Crystal Structure Of The Vma1-Derived Endonuclease Bearing
The N And C Extein Propeptides
pdb|1JVA|B Chain B, Crystal Structure Of The Vma1-Derived Endonuclease Bearing
The N And C Extein Propeptides
Length = 475
Score = 22.3 bits (46), Expect = 8.8
Identities = 14/64 (21%), Positives = 26/64 (39%), Gaps = 8/64 (12%)
Query: 26 IKDRNQVEQDLQQSNIQDGFSQDNAKNAPDFDRLQALNA--------INNDGEIKDRSQV 77
I++ E L + + GF +D KN P F + I++DG + D +
Sbjct: 287 IRNNLNTENPLWDAIVGLGFLKDGVKNIPSFLSTDNIGTRETFLAGLIDSDGYVTDEHGI 346
Query: 78 EKNL 81
+ +
Sbjct: 347 KATI 350
>pdb|1VDE|A Chain A, Pi-Scei, A Homing Endonuclease With Protein Splicing
Activity
pdb|1VDE|B Chain B, Pi-Scei, A Homing Endonuclease With Protein Splicing
Activity
pdb|1DFA|A Chain A, Crystal Structure Of Pi-Scei In C2 Space Group
Length = 454
Score = 22.3 bits (46), Expect = 8.8
Identities = 14/64 (21%), Positives = 26/64 (39%), Gaps = 8/64 (12%)
Query: 26 IKDRNQVEQDLQQSNIQDGFSQDNAKNAPDFDRLQALNA--------INNDGEIKDRSQV 77
I++ E L + + GF +D KN P F + I++DG + D +
Sbjct: 276 IRNNLNTENPLWDAIVGLGFLKDGVKNIPSFLSTDNIGTRETFLAGLIDSDGYVTDEHGI 335
Query: 78 EKNL 81
+ +
Sbjct: 336 KATI 339
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.308 0.126 0.340
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 567,382
Number of Sequences: 13198
Number of extensions: 20553
Number of successful extensions: 57
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 48
Number of HSP's gapped (non-prelim): 15
length of query: 98
length of database: 2,899,336
effective HSP length: 74
effective length of query: 24
effective length of database: 1,922,684
effective search space: 46144416
effective search space used: 46144416
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 46 (22.3 bits)