BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645737|ref|NP_207914.1| peptidyl-prolyl cis-trans
isomerase, FKBP-type rotamase (slyD) [Helicobacter pylori 26695]
(185 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodel... 39 5e-04
pdb|1FKL| Atomic Structure Of Fkbp12-Rapaymycin, An Immun... 37 0.001
pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimer... 37 0.001
pdb|1BKF| Fk506 Binding Protein Fkbp Mutant R42kH87V COMP... 37 0.001
pdb|1FKB| Fk506 Binding Protein (Fkbp) Complex With Immun... 37 0.002
pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Frag... 37 0.002
pdb|1PBK| Homologous Domain Of Human Fkbp25 35 0.005
pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Comple... 34 0.012
pdb|1ROT| Structure Of Fkbp59-I, The N-Terminal Domain Of... 29 0.29
pdb|1YAT| Fk-506 Binding Protein (12 Kd, Yeast) Complex W... 29 0.37
pdb|1JCH|A Chain A, Crystal Structure Of Colicin E3 In Comp... 28 0.49
pdb|1JI5|A Chain A, Dlp-1 From Bacillus Anthracis >gi|21730... 28 0.64
pdb|1BUI|A Chain A, Structure Of The Ternary Microplasmin-S... 26 3.2
pdb|1DDJ|A Chain A, Crystal Structure Of Human Plasminogen ... 26 3.2
pdb|1QRZ|A Chain A, Catalytic Domain Of Plasminogen >gi|643... 26 3.2
pdb|1BML|A Chain A, Complex Of The Catalytic Domain Of Huma... 26 3.2
pdb|2PTH| Peptidyl-Trna Hydrolase From Escherichia Coli 25 4.1
pdb|1KTR|M Chain M, Crystal Structure Of The Anti-His Tag A... 25 4.1
pdb|1H8N|A Chain A, Three-Dimensional Structure Of Anti-Amp... 25 4.1
pdb|1H8S|B Chain B, Three-Dimensional Structure Of Anti-Amp... 25 4.1
pdb|1IQ8|A Chain A, Crystal Structure Of Archaeosine Trna-G... 25 5.4
pdb|1DX0|A Chain A, Bovine Prion Protein Residues 23-230 >g... 25 5.4
pdb|1EYS|H Chain H, Crystal Structure Of Photosynthetic Rea... 25 7.0
pdb|1K3V|A Chain A, Porcine Parvovirus Capsid 25 7.0
pdb|1BRW|B Chain B, The Crystal Structure Of Pyrimidine Nuc... 24 9.2
pdb|1KB0|A Chain A, Crystal Structure Of Quinohemoprotein A... 24 9.2
pdb|1GW1|A Chain A, Substrate Distortion By Beta-Mannanase ... 24 9.2
pdb|1GVY|A Chain A, Substrate Distorsion By Beta-Mannanase ... 24 9.2
pdb|1LEH|A Chain A, Leucine Dehydrogenase From Bacillus Sph... 24 9.2
pdb|1J9Y|A Chain A, Crystal Structure Of Mannanase 26a From... 24 9.2
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic
Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic
Ligand
Length = 107
Score = 38.5 bits (88), Expect = 5e-04
Identities = 17/64 (26%), Positives = 34/64 (52%)
Query: 11 QAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPE 70
Q ++ Y + V S +P +F++G ++I G E+ V + +G+ ++ I+P+
Sbjct: 20 QTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPD 79
Query: 71 EAYG 74
AYG
Sbjct: 80 YAYG 83
>pdb|1FKL| Atomic Structure Of Fkbp12-Rapaymycin, An
Immunophilin-Immunosuppressant Complex
pdb|1FKK| Atomic Structure Of Fkbp12, An Immunophilin Binding Protein
Length = 107
Score = 37.4 bits (85), Expect = 0.001
Identities = 16/64 (25%), Positives = 33/64 (51%)
Query: 11 QAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPE 70
Q ++ Y + S +P +F++G ++I G E+ V + +G+ ++ I+P+
Sbjct: 20 QTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWEEGVAQMSVGQRAKLTISPD 79
Query: 71 EAYG 74
AYG
Sbjct: 80 YAYG 83
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 37.4 bits (85), Expect = 0.001
Identities = 16/64 (25%), Positives = 34/64 (53%)
Query: 11 QAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPE 70
Q ++ Y + + S +P +F++G ++I G E+ V + +G+ ++ I+P+
Sbjct: 20 QTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPD 79
Query: 71 EAYG 74
AYG
Sbjct: 80 YAYG 83
>pdb|1BKF| Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 37.0 bits (84), Expect = 0.001
Identities = 16/64 (25%), Positives = 33/64 (51%)
Query: 11 QAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPE 70
Q ++ Y + S +P +F++G ++I G E+ V + +G+ ++ I+P+
Sbjct: 20 QTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPD 79
Query: 71 EAYG 74
AYG
Sbjct: 80 YAYG 83
>pdb|1FKB| Fk506 Binding Protein (Fkbp) Complex With Immunosuppressant
Rapamycin
pdb|1FKF| FK506 Binding Protein (FKBP) Complex With Immunosuppressant
FK506
pdb|1FKJ| Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|1FKD| Fk506 Binding Protein (12 Kda, Human) Complex With The
Antagonist L-685,818
pdb|2FKE| Fk506 Binding Protein (12 Kda, Human) Complex With Fk506
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex
With Both Human Fkbp12 And Frb Domain Of Frap
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1FKH| Fk506 Binding Protein (Fkbp) Complex With Rotamase Inhibitor
(1r)-1-Cyclohexyl-3-Phenyl-1-Propyl
(2s)-1-(3,3-Dimethyl-
1,2-Dioxopentyl)-2-Piperidinecarboxylate
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|1FKG| Fk506 Binding Protein (Fkbp) Complex With Rotamase Inhibitor
(1r)-1,3-Diphenyl-1-Propyl (2s)-1-(3,3-Dimethyl-1,2-
Dioxopentyl)-2-Piperidinecarboxylate
pdb|1FKI|A Chain A, Fk506 Binding Protein (Fkbp) Complex With Rotamase
Inhibitor (21s)-1-Aza-4,4-Dimethyl-6,19-Dioxa-2,3,7,20-
Tetraoxobicyclo[19.4.0]pentacosane
pdb|1FKI|B Chain B, Fk506 Binding Protein (Fkbp) Complex With Rotamase
Inhibitor (21s)-1-Aza-4,4-Dimethyl-6,19-Dioxa-2,3,7,20-
Tetraoxobicyclo[19.4.0]pentacosane
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12-(C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type
I Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type
I Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type
I Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type
I Tgf-Beta Receptor In Complex With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12-Rapamycin Complex Interacting With Human Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex
With Both Human Fkbp12 And Frb Domain Of Frap
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR| Fk506 And Rapamycin-Binding Protein (Fkbp12) (Nmr, 20
Structures)
pdb|1FKS| Fk506 And Rapamycin-Binding Protein (Fkbp12) (Nmr, Minimized
Average Structure Excluding Electrostatic Interactions)
pdb|1FKT| Fk506 And Rapamycin-Binding Protein (Fkbp12) (Nmr, Minimized
Average Structure)
Length = 107
Score = 36.6 bits (83), Expect = 0.002
Identities = 16/64 (25%), Positives = 33/64 (51%)
Query: 11 QAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPE 70
Q ++ Y + S +P +F++G ++I G E+ V + +G+ ++ I+P+
Sbjct: 20 QTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPD 79
Query: 71 EAYG 74
AYG
Sbjct: 80 YAYG 83
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(Tacrolimus)
Length = 107
Score = 36.6 bits (83), Expect = 0.002
Identities = 16/64 (25%), Positives = 33/64 (51%)
Query: 11 QAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPE 70
Q ++ Y + S +P +F++G ++I G E+ V + +G+ ++ I+P+
Sbjct: 20 QTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPD 79
Query: 71 EAYG 74
AYG
Sbjct: 80 YAYG 83
>pdb|1PBK| Homologous Domain Of Human Fkbp25
Length = 116
Score = 35.0 bits (79), Expect = 0.005
Identities = 20/56 (35%), Positives = 30/56 (52%), Gaps = 8/56 (14%)
Query: 27 VLDSNI--------SKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYG 74
V D+NI + +PL F +G ++I G ++A+L GE + I PE AYG
Sbjct: 36 VFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYG 91
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 33.9 bits (76), Expect = 0.012
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 11 QAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPE 70
Q ++ Y Q S +P +F IG ++I G E+ + +G+ ++ P+
Sbjct: 20 QTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLTCTPD 79
Query: 71 EAYG 74
AYG
Sbjct: 80 VAYG 83
>pdb|1ROT| Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU| Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 29.3 bits (64), Expect = 0.29
Identities = 15/47 (31%), Positives = 25/47 (52%), Gaps = 1/47 (2%)
Query: 29 DSNIS-KEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYG 74
DS++ K+ F +G ++I + AV ++GE + PE AYG
Sbjct: 67 DSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGELCRITCKPEYAYG 113
>pdb|1YAT| Fk-506 Binding Protein (12 Kd, Yeast) Complex With Fk-506
Length = 113
Score = 28.9 bits (63), Expect = 0.37
Identities = 15/47 (31%), Positives = 24/47 (50%), Gaps = 1/47 (2%)
Query: 29 DSNISK-EPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYG 74
DS++ + P + IG Q+I G + + K +GE + I AYG
Sbjct: 43 DSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIPGPYAYG 89
>pdb|1JCH|A Chain A, Crystal Structure Of Colicin E3 In Complex With Its
Immunity Protein
pdb|1JCH|C Chain C, Crystal Structure Of Colicin E3 In Complex With Its
Immunity Protein
Length = 551
Score = 28.5 bits (62), Expect = 0.49
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 156 HHGGGTGCCGGHGGHGGKKGGGCG 179
H GGG+G G+GG G GGG G
Sbjct: 55 HWGGGSG--HGNGGGNGNSGGGSG 76
>pdb|1JI5|A Chain A, Dlp-1 From Bacillus Anthracis
pdb|1JI5|B Chain B, Dlp-1 From Bacillus Anthracis
pdb|1JI5|C Chain C, Dlp-1 From Bacillus Anthracis
pdb|1JI5|D Chain D, Dlp-1 From Bacillus Anthracis
Length = 142
Score = 28.1 bits (61), Expect = 0.64
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 57 AQIGEWEEVVIAPEEAYGVYESSYLQEVPRD-QFEGIELEKGMSVFGQTEDNQTIQAII 114
A + E+ E+ E AYG ++ + +D + +EL+KGM + ++D T ++
Sbjct: 66 ATMKEYLEISSIQEAAYGETAEGMVEAIMKDYEMMLVELKKGMEIAQNSDDEMTSDLLL 124
>pdb|1BUI|A Chain A, Structure Of The Ternary Microplasmin-Staphylokinase-
Microplasmin Complex: A Proteinase-Cofactor-Substrate
Complex In Action.
pdb|1BUI|B Chain B, Structure Of The Ternary Microplasmin-Staphylokinase-
Microplasmin Complex: A Proteinase-Cofactor-Substrate
Complex In Action
Length = 250
Score = 25.8 bits (55), Expect = 3.2
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 129 PLAGKTLAFRFKVLGFREVSEEEILASHHGGGTGCCGGHGG 169
P+ + R++ L R V E+ A H GGT C G G
Sbjct: 162 PVIENKVCNRYEFLNGR-VQSTELCAGHLAGGTDSCQGDSG 201
>pdb|1DDJ|A Chain A, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|B Chain B, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|C Chain C, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|D Chain D, Crystal Structure Of Human Plasminogen Catalytic Domain
Length = 247
Score = 25.8 bits (55), Expect = 3.2
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 129 PLAGKTLAFRFKVLGFREVSEEEILASHHGGGTGCCGGHGG 169
P+ + R++ L R V E+ A H GGT C G G
Sbjct: 159 PVIENKVCNRYEFLNGR-VQSTELCAGHLAGGTDSCQGDAG 198
>pdb|1QRZ|A Chain A, Catalytic Domain Of Plasminogen
pdb|1QRZ|B Chain B, Catalytic Domain Of Plasminogen
pdb|1QRZ|C Chain C, Catalytic Domain Of Plasminogen
pdb|1QRZ|D Chain D, Catalytic Domain Of Plasminogen
Length = 246
Score = 25.8 bits (55), Expect = 3.2
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 129 PLAGKTLAFRFKVLGFREVSEEEILASHHGGGTGCCGGHGG 169
P+ + R++ L R V E+ A H GGT C G G
Sbjct: 158 PVIENKVCNRYEFLNGR-VQSTELCAGHLAGGTDSCQGDSG 197
>pdb|1BML|A Chain A, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
pdb|1BML|B Chain B, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
Length = 250
Score = 25.8 bits (55), Expect = 3.2
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 129 PLAGKTLAFRFKVLGFREVSEEEILASHHGGGTGCCGGHGG 169
P+ + R++ L R V E+ A H GGT C G G
Sbjct: 162 PVIENKVCNRYEFLNGR-VQSTELCAGHLAGGTDSCQGDAG 201
>pdb|2PTH| Peptidyl-Trna Hydrolase From Escherichia Coli
Length = 193
Score = 25.4 bits (54), Expect = 4.1
Identities = 17/52 (32%), Positives = 24/52 (45%), Gaps = 10/52 (19%)
Query: 130 LAGKTLAFRFKVLGFREVSEEEILASHHG-------GGTGCCGGHGGHGGKK 174
L+GK +A + F ++ +EIL +H GGHGGH G K
Sbjct: 69 LSGKAVA---AMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLK 117
>pdb|1KTR|M Chain M, Crystal Structure Of The Anti-His Tag Antibody 3d5 Single-
Chain Fragment (Scfv) In Complex With A Oligohistidine
Peptide
Length = 20
Score = 25.4 bits (54), Expect = 4.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 159 GGTGCCGGHGGHGGKKGGG 177
GG G GG G GG GGG
Sbjct: 1 GGGGSGGGGSGGGGSGGGG 19
>pdb|1H8N|A Chain A, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment From Phage-Displayed Murine Antibody
Libraries
Length = 252
Score = 25.4 bits (54), Expect = 4.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 159 GGTGCCGGHGGHGGKKGGG 177
GG G GG G GG GGG
Sbjct: 112 GGGGSGGGGSGGGGSGGGG 130
>pdb|1H8S|B Chain B, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment Complexed With The Hapten.
pdb|1H8O|B Chain B, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment.
pdb|1H8S|A Chain A, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment Complexed With The Hapten.
pdb|1H8O|A Chain A, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment
Length = 252
Score = 25.4 bits (54), Expect = 4.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 159 GGTGCCGGHGGHGGKKGGG 177
GG G GG G GG GGG
Sbjct: 112 GGGGSGGGGSGGGGSGGGG 130
>pdb|1IQ8|A Chain A, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase From Pyrococcus Horikoshii
pdb|1IQ8|B Chain B, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase From Pyrococcus Horikoshii
pdb|1IT7|A Chain A, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase Complexed With Guanine
pdb|1IT7|B Chain B, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase Complexed With Guanine
pdb|1IT8|A Chain A, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase From Pyrococcus Horikoshii Complexed
With Archaeosine Precursor, Preq0
pdb|1IT8|B Chain B, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase From Pyrococcus Horikoshii Complexed
With Archaeosine Precursor, Preq0
Length = 582
Score = 25.0 bits (53), Expect = 5.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 121 HVMVDYNHPLAGKTLAFRFKVLGFREVSEEEILASHH 157
H M+DYN + + +F+ G EVS EI+ H
Sbjct: 83 HRMLDYNGIIEVDSGSFQLMKYGSIEVSNREIIEFQH 119
>pdb|1DX0|A Chain A, Bovine Prion Protein Residues 23-230
pdb|1DX1|A Chain A, Bovine Prion Protein Residues 23-230
Length = 219
Score = 25.0 bits (53), Expect = 5.4
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 157 HGGGTGCCGGHGGHGGKK--GGGCGCSCSHG 185
HGGG G HGG G+ GGG G +HG
Sbjct: 58 HGGGWG--QPHGGGWGQPHGGGGWGQGGTHG 86
>pdb|1EYS|H Chain H, Crystal Structure Of Photosynthetic Reaction Center From A
Thermophilic Bacterium, Thermochromatium Tepidum
Length = 259
Score = 24.6 bits (52), Expect = 7.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 138 RFKVLGFREVSEEEILASHHGGGT 161
R+KV+GF ++ + + H GGT
Sbjct: 52 RYKVVGFPDLPDPKTFVLPHNGGT 75
>pdb|1K3V|A Chain A, Porcine Parvovirus Capsid
Length = 579
Score = 24.6 bits (52), Expect = 7.0
Identities = 10/17 (58%), Positives = 11/17 (63%)
Query: 165 GGHGGHGGKKGGGCGCS 181
GG GG GG+ GG G S
Sbjct: 26 GGGGGGGGRGAGGVGVS 42
>pdb|1BRW|B Chain B, The Crystal Structure Of Pyrimidine Nucleoside
Phosphorylase In A Closed Conformation
pdb|1BRW|A Chain A, The Crystal Structure Of Pyrimidine Nucleoside
Phosphorylase In A Closed Conformation
Length = 433
Score = 24.3 bits (51), Expect = 9.2
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 83 EVPRDQFEGIELEKGMSVFGQTED 106
E+ +D+F + E G+++ GQT D
Sbjct: 133 EISKDEFIRLVNENGIAIIGQTGD 156
>pdb|1KB0|A Chain A, Crystal Structure Of Quinohemoprotein Alcohol
Dehydrogenase From Comamonas Testosteroni
Length = 677
Score = 24.3 bits (51), Expect = 9.2
Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 74 GVYESSYLQEVPRDQFEGIELEKGMSVFG---QTEDNQTIQAIIK 115
G ++SY++ +P F+G + +GM F +D ++++A I+
Sbjct: 623 GYMDASYIENLPNFVFKGPAMVRGMPDFTGKLSGDDVESLKAFIQ 667
>pdb|1GW1|A Chain A, Substrate Distortion By Beta-Mannanase From Pseudomonas
Cellulosa
Length = 376
Score = 24.3 bits (51), Expect = 9.2
Identities = 11/40 (27%), Positives = 20/40 (49%), Gaps = 3/40 (7%)
Query: 68 APEEAYGVYESSYLQEVPRDQFEGIELEKGMSVFGQTEDN 107
+P + V E++YL+ P D++ + G +G DN
Sbjct: 213 SPNNFWDVTEANYLERYPGDEWVDV---LGFDTYGPVADN 249
>pdb|1GVY|A Chain A, Substrate Distorsion By Beta-Mannanase From Pseudomonas
Cellulosa
Length = 383
Score = 24.3 bits (51), Expect = 9.2
Identities = 11/40 (27%), Positives = 20/40 (49%), Gaps = 3/40 (7%)
Query: 68 APEEAYGVYESSYLQEVPRDQFEGIELEKGMSVFGQTEDN 107
+P + V E++YL+ P D++ + G +G DN
Sbjct: 217 SPNNFWDVTEANYLERYPGDEWVDV---LGFDTYGPVADN 253
>pdb|1LEH|A Chain A, Leucine Dehydrogenase From Bacillus Sphaericus
pdb|1LEH|B Chain B, Leucine Dehydrogenase From Bacillus Sphaericus
Length = 364
Score = 24.3 bits (51), Expect = 9.2
Identities = 10/34 (29%), Positives = 16/34 (46%)
Query: 42 GTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGV 75
G ++ + KA + A + E +AP YGV
Sbjct: 196 GAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGV 229
>pdb|1J9Y|A Chain A, Crystal Structure Of Mannanase 26a From Pseudomonas
Cellulosa
Length = 385
Score = 24.3 bits (51), Expect = 9.2
Identities = 11/40 (27%), Positives = 20/40 (49%), Gaps = 3/40 (7%)
Query: 68 APEEAYGVYESSYLQEVPRDQFEGIELEKGMSVFGQTEDN 107
+P + V E++YL+ P D++ + G +G DN
Sbjct: 217 SPNNFWDVTEANYLERYPGDEWVDV---LGFDTYGPVADN 253
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.137 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,207,616
Number of Sequences: 13198
Number of extensions: 51296
Number of successful extensions: 171
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 40
length of query: 185
length of database: 2,899,336
effective HSP length: 83
effective length of query: 102
effective length of database: 1,803,902
effective search space: 183998004
effective search space used: 183998004
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)