BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645738|ref|NP_207915.1| hypothetical protein
[Helicobacter pylori 26695]
(331 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 42 1e-04
pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Huma... 35 0.009
pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolip... 35 0.015
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Co... 31 0.17
pdb|2TMA|A Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain... 31 0.17
pdb|1AN2|A Chain A, Recognition By Max Of Its Cognate Dna >... 30 0.29
pdb|1LRZ|A Chain A, X-Ray Crystal Structure Of Staphylococc... 30 0.50
pdb|1I3P|A Chain A, The 3.1 Angstrom Resolution Crystal Str... 29 0.65
pdb|1FS9|A Chain A, Cytochrome C Nitrite Reductase From Wol... 29 0.85
pdb|1FS8|A Chain A, Cytochrome C Nitrite Reductase From Wol... 29 0.85
pdb|1BXI|B Chain B, Crystal Structure Of The Escherichia Co... 28 1.1
pdb|1BG1|A Chain A, Three-Dimensional Structure Of The Stat... 28 1.1
pdb|1EMV|B Chain B, Crystal Structure Of Colicin E9 Dnase D... 28 1.1
pdb|1DOQ|A Chain A, The C-Terminal Domain Of The Rna Polyme... 28 1.9
pdb|1IW7|A Chain A, Crystal Structure Of The Rna Polymerase... 28 1.9
pdb|1EKU|B Chain B, Crystal Structure Of A Biologically Act... 27 2.5
pdb|1JOB|A Chain A, Crystal Structure Of Murine Olfactory M... 27 2.5
pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta >g... 27 2.5
pdb|1SIG| Crystal Structure Of A Sigma70 Subunit Fragment... 27 2.5
pdb|1IYJ|B Chain B, Structure Of A Brca2-Dss1 Complex >gi|2... 27 3.2
pdb|1QDB|A Chain A, Cytochrome C Nitrite Reductase >gi|5822... 27 4.2
pdb|1DN1|B Chain B, Crystal Structure Of The Neuronal-Sec1S... 27 4.2
pdb|1JYT|A Chain A, Solution Structure Of Olfactory Marker ... 26 5.5
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 26 7.2
pdb|1GGQ|A Chain A, Outer Surface Protein C (Ospc) Of Borre... 26 7.2
pdb|1F35|A Chain A, Crystal Structure Of Murine Olfactory M... 25 9.4
pdb|1ID3|H Chain H, Crystal Structure Of The Yeast Nucleoso... 25 9.4
pdb|4HB1| A Designed Four Helix Bundle Protein 25 9.4
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 41.6 bits (96), Expect = 1e-04
Identities = 44/189 (23%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 34 KQLQINSKNFSNILTKIHSQVEANTQAQEGLRSVYEGQANKIKDLNNAILSQEESLRALK 93
+QLQ K + + Q+E A++ L+ KIK + + IL E+
Sbjct: 944 QQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMED------ 997
Query: 94 ASQEVQANTLKQQSQTLEDLRNEIHANQQAIQQLDKQNKEMSELLTKLSQDLVSQIALIQ 153
Q N L ++ + LE+ +++ N + +E ++ LTKL S I+ ++
Sbjct: 998 -----QNNKLTKERKLLEERVSDLTTNL-------AEEEEKAKNLTKLKNKHESMISELE 1045
Query: 154 KALKEQEEKAEKPLKSNAPANKTPSLKAESPKNQEGKTQEKAKI-EFDKDLSKQKEIFQE 212
LK++E+ ++ K L+ ES E + +A+I E L+K++E Q
Sbjct: 1046 VRLKKEEKSRQELEKIKR------KLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQA 1099
Query: 213 ALSFFKNKS 221
AL+ ++++
Sbjct: 1100 ALARLEDET 1108
Score = 34.7 bits (78), Expect = 0.015
Identities = 33/160 (20%), Positives = 76/160 (46%), Gaps = 5/160 (3%)
Query: 74 KIKDLNNAILSQEESLRALKASQ---EVQANTLKQQSQTLEDLRNEIHANQQAIQQLDKQ 130
K+ + +++E L+ K Q E + L+Q+ L + +N + QA +L +
Sbjct: 851 KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE 910
Query: 131 NKEMSELLTKLSQDLVSQIALIQKALKEQEEKAEKPLKSNAPANKTPSLKAESPKNQEGK 190
+EM L Q+L + ++ ++E+EE++++ L++ + L E +E
Sbjct: 911 AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQ-LQAEKKKMQQQMLDLEEQLEEEEA 969
Query: 191 TQEKAKIEFDKDLSKQKEIFQEALSFFKNKSYAEAKERLL 230
++K ++E K K++ ++ + ++++ KER L
Sbjct: 970 ARQKLQLEKVTADGKIKKM-EDDILIMEDQNNKLTKERKL 1008
Score = 33.1 bits (74), Expect = 0.045
Identities = 32/156 (20%), Positives = 67/156 (42%), Gaps = 33/156 (21%)
Query: 18 EPSAFDLQSGATKKELKQLQINSKNFSNILTKIHSQV----------EANTQAQEGLRSV 67
E DL + ++E K +KN + + K S + E + Q E ++
Sbjct: 1010 EERVSDLTTNLAEEEEK-----AKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK 1064
Query: 68 YEGQAN-----------KIKDLNNAILSQEESLRALKASQEVQANT-------LKQQSQT 109
EG+++ +I +L + +EE L+A A E + + +++
Sbjct: 1065 LEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESH 1124
Query: 110 LEDLRNEIHANQQAIQQLDKQNKEMSELLTKLSQDL 145
+ DL+ ++ + + A + +KQ +++SE L L +L
Sbjct: 1125 ISDLQEDLESEKAARNKAEKQKRDLSEELEALKTEL 1160
Score = 31.6 bits (70), Expect = 0.13
Identities = 25/115 (21%), Positives = 49/115 (41%), Gaps = 6/115 (5%)
Query: 25 QSGATKKELKQLQINSKNFSNILTKIHSQVEANTQAQEGLRSVYEGQANKIKDLNNAILS 84
+S +++ +LQ L K +++A E S KI++L + I
Sbjct: 1068 ESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISD 1127
Query: 85 QEESLRALKASQEVQANTLKQQSQTLEDLRNEIH------ANQQAIQQLDKQNKE 133
+E L + KA++ + S+ LE L+ E+ A QQ ++ D ++ +
Sbjct: 1128 LQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182
>pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Human Max-Dna Complex:
New Insights Into Mechanisms Of Transcriptional Control
pdb|1HLO|B Chain B, The Crystal Structure Of An Intact Human Max-Dna Complex:
New Insights Into Mechanisms Of Transcriptional Control
Length = 150
Score = 35.4 bits (80), Expect = 0.009
Identities = 29/141 (20%), Positives = 64/141 (44%), Gaps = 9/141 (6%)
Query: 53 QVEANTQAQEGLRSVYEGQANKIKDLNNAILSQEESLRALKASQEVQANTLKQQSQTLED 112
+VE++ + ++ + + IKD +++ SL+ KAS+ A L + ++ ++
Sbjct: 7 EVESDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASR---AQILDKATEYIQY 63
Query: 113 LRNEIHANQQAIQQLDKQNKEMSELLTKLSQDLVSQIALIQKALKEQEEKAEKPLKSNAP 172
+R + H +QQ I L +QN + + + L + A L+ ++ L +NA
Sbjct: 64 MRRKNHTHQQDIDDLKRQNALLEQQVRALEK------ARSSAQLQTNYPSSDNSLYTNAK 117
Query: 173 ANKTPSLKAESPKNQEGKTQE 193
+ + S + E + +E
Sbjct: 118 GSTISAFDGGSDSSSESEPEE 138
>pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolipoprotein-Manduca
Sexta Apolipophorin-Iii
Length = 166
Score = 34.7 bits (78), Expect = 0.015
Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 55 EANTQAQEGLRSVYEGQANKIKDLNNAILSQEESLRALKASQEVQANTLKQQSQTLEDLR 114
+AN +A+E L + ++L A E+ A K + T Q+SQ L
Sbjct: 67 DANGKAKEALEQARQNVEKTAEELRKAHPDVEKEANAFKDKLQAAVQTTVQESQKLA--- 123
Query: 115 NEIHANQQAIQQLDKQNKEMSELLTKLSQDLVSQIALIQKALKEQEEK 162
++ +++ NK+++ + + D V +QK L E K
Sbjct: 124 ------KEVASNMEETNKKLAPKIKQAYDDFVKHAEEVQKKLHEAATK 165
>pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp.
pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
Length = 592
Score = 31.2 bits (69), Expect = 0.17
Identities = 24/129 (18%), Positives = 61/129 (46%), Gaps = 5/129 (3%)
Query: 41 KNFSNILTKIHSQVEANTQAQEGLRSVYEGQANKIKDLNNAILSQEESLRALKASQEVQA 100
+ ++ K + + QA+E L++ + + + + +AIL +++L + EV+
Sbjct: 438 QKLQDLKKKYYEEPRKGIQAEEILQTYLKSK----ESMTDAILQTDQTLTEKEKEIEVER 493
Query: 101 NTLKQQSQTLEDLRNEIHANQQAIQQLDKQNKE-MSELLTKLSQDLVSQIALIQKALKEQ 159
+ + + L N+Q ++Q ++ +E + +L K+ D V + ++ L +
Sbjct: 494 VKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALK 553
Query: 160 EEKAEKPLK 168
++ E+ LK
Sbjct: 554 LQEQEQLLK 562
>pdb|2TMA|A Chain A, Tropomyosin
pdb|2TMA|B Chain B, Tropomyosin
Length = 284
Score = 31.2 bits (69), Expect = 0.17
Identities = 42/211 (19%), Positives = 89/211 (41%), Gaps = 35/211 (16%)
Query: 28 ATKKELKQLQINSKNFSNILTKIHSQVEANTQAQEGLRSVYEGQANKIKDLNNAILSQEE 87
A KK+++ L+++ +N + + + +A + L K+K + + E
Sbjct: 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSE 62
Query: 88 SLRALKASQEVQANTLKQQSQTLEDLRNEIHANQQAIQQLDKQNKEMSELLTKLSQDLVS 147
ALK +QE K+ + D+ + Q ++LD+ + ++ L KL +
Sbjct: 63 ---ALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEE---- 115
Query: 148 QIALIQKALKEQEEKAEKPLKSNAPANKTPSLKAESPKNQEGKTQEKAKIEFDKDLSKQK 207
+KA ++ E+ K ++S A K +EK +I+ + L + K
Sbjct: 116 ----AEKA-ADESERGMKVIESRAQ-----------------KDEEKMEIQ-EIQLKEAK 152
Query: 208 EIFQEALSFFKNKSYAEAKERLLWLEANSYR 238
I ++A ++ Y E +L+ +E++ R
Sbjct: 153 HIAEDA-----DRKYEEVARKLVIIESDLER 178
>pdb|1AN2|A Chain A, Recognition By Max Of Its Cognate Dna
pdb|1AN2|C Chain C, Recognition By Max Of Its Cognate Dna
Length = 86
Score = 30.4 bits (67), Expect = 0.29
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 75 IKDLNNAILSQEESLRALKASQEVQANTLKQQSQTLEDLRNEIHANQQAIQQLDKQNKEM 134
IKD +++ SL+ KAS+ A L + ++ ++ +R + H +QQ I L +QN +
Sbjct: 18 IKDSFHSLRDSVPSLQGEKASR---AQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALL 74
Query: 135 SELLTKLSQ 143
+ + L +
Sbjct: 75 EQQVRALEK 83
>pdb|1LRZ|A Chain A, X-Ray Crystal Structure Of Staphylococcus Aureus Fema
Length = 426
Score = 29.6 bits (65), Expect = 0.50
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 27/203 (13%)
Query: 128 DKQNKEMSELLTKLSQDLVSQIALIQKALKEQEEKAEKPLKSNAPANKTPSLKAESPKNQ 187
D+ KE++E L++DL KALK+ E++ E N N L A K +
Sbjct: 246 DEYIKELNEERDILNKDL-------NKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIE 298
Query: 188 EGKTQEKAKIEFDKDLSKQKEIFQEALSFFKNKSYAEAKERLLWLEANSYRLYY--VRYV 245
EGK ++ E +L F ++ F+ YA A SY + + + Y
Sbjct: 299 EGKRLQE---EHGNELPISAGFF--FINPFEVVYYAGGTSNAFRHFAGSYAVQWEMINYA 353
Query: 246 LGEVAYGEKRYREAIKYYKESALLNKKASYMPVLLWHTAWSFKKIKDDQNYYKFLNTLQH 305
L +G RY +Y S + A V+ + ++ + I+ ++ K +N +
Sbjct: 354 LN---HGIDRY----NFYGVSGKFTEDAEDAGVVKFKKGYNAEIIEYVGDFIKPINKPVY 406
Query: 306 LYPSSEQAKMAQKILENKEKHHH 328
A A K ++++ HHH
Sbjct: 407 ------AAYTALKKVKDRIFHHH 423
>pdb|1I3P|A Chain A, The 3.1 Angstrom Resolution Crystal Structure Of A Mutated
Baculovirus P35 After Caspase Cleavage
Length = 298
Score = 29.3 bits (64), Expect = 0.65
Identities = 34/165 (20%), Positives = 71/165 (42%), Gaps = 29/165 (17%)
Query: 116 EIHANQQAIQ--QLDKQNKEMSELLTKLSQDLVSQIALIQKALKEQEEKAEKPLKSNAPA 173
EI +Q I+ Q+DKQ +E+ + ++ L + ++ P++S
Sbjct: 7 EIDVSQTIIRDCQVDKQTRELVYINKIMNTQLTKPVLMMFNI--------SGPIRSVTRK 58
Query: 174 NKTPSLKAESPKNQEGKTQEKAKIEFD---KDLSKQKEIFQEALSFFKNKSYAEAKERLL 230
N N + + K +FD KD S Q + F +++ +FK++ Y+ + +
Sbjct: 59 NN----------NLRDRIKSKPDEQFDQLEKDYSDQMDGFHDSIKYFKDEHYSVSCQNGS 108
Query: 231 WLEANSYRLYYVRYVLGEVAYGEKRYREAIKYYKESALLNKKASY 275
L++ + +L Y +K+ EA + Y L++++ Y
Sbjct: 109 VLKSKFAK------ILKSHDYTDKKSIEAYEKYCLPKLVDERNDY 147
>pdb|1FS9|A Chain A, Cytochrome C Nitrite Reductase From Wolinella
Succinogenes- Azide Complex
Length = 507
Score = 28.9 bits (63), Expect = 0.85
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 118 HANQQAIQQLDKQNKEMSELLTKLSQDLVSQIALIQKALK-EQEEKAEKPLKSNAPANKT 176
HA ++ ++ L N+E + KL + L A+ A E +EKA+K K + A
Sbjct: 405 HAPEEVLRLLASGNEEAQKARIKLVKVLAKYGAIDYVAPDFETKEKAQKLAKVDMEAFIA 464
Query: 177 PSLKAESPKNQEGKTQEKAK 196
LK + QE K Q AK
Sbjct: 465 EKLKFKQTLEQEWKKQAIAK 484
>pdb|1FS8|A Chain A, Cytochrome C Nitrite Reductase From Wolinella
Succinogenes- Sulfate Complex
pdb|1FS7|A Chain A, Cytochrome C Nitrite Reductase From Wolinella Succinogenes
Length = 485
Score = 28.9 bits (63), Expect = 0.85
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 118 HANQQAIQQLDKQNKEMSELLTKLSQDLVSQIALIQKALK-EQEEKAEKPLKSNAPANKT 176
HA ++ ++ L N+E + KL + L A+ A E +EKA+K K + A
Sbjct: 383 HAPEEVLRLLASGNEEAQKARIKLVKVLAKYGAIDYVAPDFETKEKAQKLAKVDMEAFIA 442
Query: 177 PSLKAESPKNQEGKTQEKAK 196
LK + QE K Q AK
Sbjct: 443 EKLKFKQTLEQEWKKQAIAK 462
>pdb|1BXI|B Chain B, Crystal Structure Of The Escherichia Coli Colicin E9 Dnase
Domain With Its Cognate Immunity Protein Im9
Length = 134
Score = 28.5 bits (62), Expect = 1.1
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 153 QKALKEQEEKAEKPLKSNAPANKTPSLKAESP---KNQEGKTQEKAKIEFDKDLSKQKEI 209
+KA+ E+ K + K+ P+NK+ K SP KNQ+ ++ ++ DK +S+ E+
Sbjct: 54 RKAVWEEVSKDPELSKNLNPSNKSSVSKGYSPFTPKNQQVGGRKVYELHHDKPISQGGEV 113
Query: 210 F 210
+
Sbjct: 114 Y 114
>pdb|1BG1|A Chain A, Three-Dimensional Structure Of The Stat3b Homodimer Bound
To Dna
Length = 722
Score = 28.5 bits (62), Expect = 1.1
Identities = 31/165 (18%), Positives = 69/165 (41%), Gaps = 8/165 (4%)
Query: 51 HSQVEANTQAQEGLRSVYEGQANKIKDLNNAILSQEESLRALKASQEVQANTLKQQSQTL 110
H T+ Q+ L + +++DL + E L+ + TLK Q
Sbjct: 131 HPTAAVVTEKQQMLEQHLQDVRKRVQDLEQKMKVVEN----LQDDFDFNYKTLKSQGDMQ 186
Query: 111 EDLRNEIHANQQAIQQLDKQNKEMSELLTKLSQD---LVSQIALIQKALKEQEEKAEKPL 167
+ N +Q +QQL++ + ++ + + L+S + +QK L ++E K
Sbjct: 187 DLNGNNQSVTRQKMQQLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEELADWKRR 246
Query: 168 KSNAPANKTPSLKAESPKNQEGKTQEKAKIEFDKDLSKQKEIFQE 212
+ A P++ + +N E ++++ + + K +E+ Q+
Sbjct: 247 QQIACIGGPPNICLDRLENWITSLAE-SQLQTRQQIKKLEELQQK 290
>pdb|1EMV|B Chain B, Crystal Structure Of Colicin E9 Dnase Domain With Its
Cognate Immunity Protein Im9 (1.7 Angstroms)
Length = 134
Score = 28.5 bits (62), Expect = 1.1
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 153 QKALKEQEEKAEKPLKSNAPANKTPSLKAESP---KNQEGKTQEKAKIEFDKDLSKQKEI 209
+KA+ E+ K + K+ P+NK+ K SP KNQ+ ++ ++ DK +S+ E+
Sbjct: 54 RKAVWEEVSKDPELSKNLNPSNKSSVSKGYSPFTPKNQQVGGRKVYELHHDKPISQGGEV 113
Query: 210 F 210
+
Sbjct: 114 Y 114
>pdb|1DOQ|A Chain A, The C-Terminal Domain Of The Rna Polymerase Alpha Subunit
From Thermus Thermophilus
Length = 69
Score = 27.7 bits (60), Expect = 1.9
Identities = 17/45 (37%), Positives = 24/45 (52%)
Query: 61 QEGLRSVYEGQANKIKDLNNAILSQEESLRALKASQEVQANTLKQ 105
+EG+ SV A +KDL N E SL +K + E + TLK+
Sbjct: 25 EEGIESVRALLALNLKDLKNIPGIGERSLEEIKEALEKKGFTLKE 69
>pdb|1IW7|A Chain A, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|B Chain B, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|K Chain K, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|L Chain L, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
Length = 315
Score = 27.7 bits (60), Expect = 1.9
Identities = 17/45 (37%), Positives = 24/45 (52%)
Query: 61 QEGLRSVYEGQANKIKDLNNAILSQEESLRALKASQEVQANTLKQ 105
+EG+ SV A +KDL N E SL +K + E + TLK+
Sbjct: 271 EEGIESVRALLALNLKDLKNIPGIGERSLEEIKEALEKKGFTLKE 315
>pdb|1EKU|B Chain B, Crystal Structure Of A Biologically Active Single Chain
Mutant Of Human Ifn-Gamma
pdb|1EKU|A Chain A, Crystal Structure Of A Biologically Active Single Chain
Mutant Of Human Ifn-Gamma
Length = 265
Score = 27.3 bits (59), Expect = 2.5
Identities = 32/150 (21%), Positives = 63/150 (41%), Gaps = 11/150 (7%)
Query: 162 KAEKPLKSNAPANKTPSLKAESPKNQEGKTQEKAKIEFDK-------DLSKQKEIFQEAL 214
K K K + K+ E + + +K + +F+K DL+ Q++ E +
Sbjct: 56 KLFKNFKDDQSIQKSVETIKEDMNVKFFNSNKKKRDDFEKLTNYSVTDLNVQRKAIDELI 115
Query: 215 SFFKNKSYAEAKERLLWLEANSYRLYYVRYVLGEVAYGEKRYREAIKYYKESALLNKKAS 274
S E +E EA + + Y+ +VA + +K +KE + ++K
Sbjct: 116 QVMAEFSTEEQQEGPYVKEAENLKKYF-NAGHSDVADNGTLFLGILKNWKEES--DRKIM 172
Query: 275 YMPVLLWHTAWSFKKIKDDQNYYKFLNTLQ 304
++ ++ FK KDDQ+ K + T++
Sbjct: 173 QSQIVSFYFKL-FKNFKDDQSIQKSVETIK 201
>pdb|1JOB|A Chain A, Crystal Structure Of Murine Olfactory Marker Protein In
Spacegroup P3121
Length = 162
Score = 27.3 bits (59), Expect = 2.5
Identities = 16/46 (34%), Positives = 24/46 (51%)
Query: 128 DKQNKEMSELLTKLSQDLVSQIALIQKALKEQEEKAEKPLKSNAPA 173
D K+ E+ L QDL Q+ L ++LK++ EK + K PA
Sbjct: 3 DGPQKQQLEMPLVLDQDLTQQMRLRVESLKQRGEKKQDGEKLIRPA 48
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 27.3 bits (59), Expect = 2.5
Identities = 19/68 (27%), Positives = 33/68 (47%), Gaps = 3/68 (4%)
Query: 133 EMSELLTKLSQDLVSQIALIQKALKEQEEKAEKPLKSNAPANKTPSLKAESPKNQEGKTQ 192
E + +T+L+++ QIA + KALKE E K +K A + ++ + Q
Sbjct: 108 EQTAKITELARE--KQIAEL-KALKESSESNIKDIKKKLEAKRLDRIQVXXRSTSDKAAQ 164
Query: 193 EKAKIEFD 200
E+ K E +
Sbjct: 165 ERLKKEIN 172
>pdb|1SIG| Crystal Structure Of A Sigma70 Subunit Fragment From Escherichia
Coli Rna Polymerase
Length = 339
Score = 27.3 bits (59), Expect = 2.5
Identities = 15/58 (25%), Positives = 30/58 (50%)
Query: 104 KQQSQTLEDLRNEIHANQQAIQQLDKQNKEMSELLTKLSQDLVSQIALIQKALKEQEE 161
K S+ L D+ E+H Q +QQ++++ E + +++ + A ++A KE E
Sbjct: 215 KPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVE 272
>pdb|1IYJ|B Chain B, Structure Of A Brca2-Dss1 Complex
pdb|1IYJ|D Chain D, Structure Of A Brca2-Dss1 Complex
Length = 817
Score = 26.9 bits (58), Expect = 3.2
Identities = 15/56 (26%), Positives = 30/56 (52%), Gaps = 6/56 (10%)
Query: 114 RNEIHANQQAIQQLDKQNKEMSELLTKLSQDL------VSQIALIQKALKEQEEKA 163
RNE ++A++ + Q K++ L TK+ +L ++Q ++ +AL Q+ A
Sbjct: 438 RNEREEEKEALRFAEAQQKKLEALFTKVHTELKEHEEDIAQRRVLSRALTRQQVHA 493
>pdb|1QDB|A Chain A, Cytochrome C Nitrite Reductase
pdb|1QDB|B Chain B, Cytochrome C Nitrite Reductase
pdb|1QDB|C Chain C, Cytochrome C Nitrite Reductase
Length = 473
Score = 26.6 bits (57), Expect = 4.2
Identities = 16/63 (25%), Positives = 29/63 (45%)
Query: 158 EQEEKAEKPLKSNAPANKTPSLKAESPKNQEGKTQEKAKIEFDKDLSKQKEIFQEALSFF 217
+ ++KA+K K + A +K + QE K + KAK + +L K + + S +
Sbjct: 411 DTKDKAQKLAKVDIAALAAEKMKFKQTLEQEWKKEAKAKGRANPELYKDVDTINDGKSSW 470
Query: 218 KNK 220
K
Sbjct: 471 NKK 473
>pdb|1DN1|B Chain B, Crystal Structure Of The Neuronal-Sec1SYNTAXIN 1A COMPLEX
Length = 267
Score = 26.6 bits (57), Expect = 4.2
Identities = 26/142 (18%), Positives = 62/142 (43%), Gaps = 10/142 (7%)
Query: 29 TKKELKQLQINSKNFSNILTKIHSQVEANTQAQEGLRSVYEGQANKIKDLNNAILSQE-- 86
TK+EL++L + K +N + +E + + +EGL +I+ ++ LS++
Sbjct: 71 TKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNR--SSADLRIRKTQHSTLSRKFV 128
Query: 87 ESLRALKASQEVQANTLKQQSQTLEDLRNEIHANQQAIQQLDKQNKEMSELLTKLSQDLV 146
E + A+Q K + Q ++ +++ L+ N + + ++
Sbjct: 129 EVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAI------FASGII 182
Query: 147 SQIALIQKALKEQEEKAEKPLK 168
++ ++AL E E + + +K
Sbjct: 183 MDSSISKQALSEIETRHSEIIK 204
>pdb|1JYT|A Chain A, Solution Structure Of Olfactory Marker Protein From Rat
Length = 163
Score = 26.2 bits (56), Expect = 5.5
Identities = 15/46 (32%), Positives = 24/46 (51%)
Query: 128 DKQNKEMSELLTKLSQDLVSQIALIQKALKEQEEKAEKPLKSNAPA 173
D K+ ++ L QDL Q+ L ++LK++ EK + K PA
Sbjct: 4 DGPQKQQLDMPLVLDQDLTKQMRLRVESLKQRGEKKQDGEKLLRPA 49
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 25.8 bits (55), Expect = 7.2
Identities = 16/62 (25%), Positives = 30/62 (47%)
Query: 103 LKQQSQTLEDLRNEIHANQQAIQQLDKQNKEMSELLTKLSQDLVSQIALIQKALKEQEEK 162
LK + D +E A+++A + KQ ++ L K + ++ +ALK+ +EK
Sbjct: 11 LKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEK 70
Query: 163 AE 164
E
Sbjct: 71 LE 72
>pdb|1GGQ|A Chain A, Outer Surface Protein C (Ospc) Of Borrelia Burgdorferi
Strain B31
pdb|1GGQ|B Chain B, Outer Surface Protein C (Ospc) Of Borrelia Burgdorferi
Strain B31
pdb|1GGQ|C Chain C, Outer Surface Protein C (Ospc) Of Borrelia Burgdorferi
Strain B31
pdb|1GGQ|D Chain D, Outer Surface Protein C (Ospc) Of Borrelia Burgdorferi
Strain B31
Length = 174
Score = 25.8 bits (55), Expect = 7.2
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 14/112 (12%)
Query: 74 KIKDLNNAILSQEESLRALKASQEVQANTLKQQSQTLEDLRNEIHANQQAIQQLDKQNKE 133
K+ L N L +E + A K E N LK++ DL E + A + + K N
Sbjct: 75 KLDGLKNEGL--KEKIDAAKKCSETFTNKLKEKHT---DLGKEGVTDADAKEAILKTNGT 129
Query: 134 MSELLTKLSQDLVSQIALIQKALKEQEEKAEKPLKSNAPANKTPSLKAESPK 185
++ +L + L + ++ KA KE + K L T + AESPK
Sbjct: 130 KTKGAEELGK-LFESVEVLSKAAKEMLANSVKEL--------TSPVVAESPK 172
>pdb|1F35|A Chain A, Crystal Structure Of Murine Olfactory Marker Protein
pdb|1F35|B Chain B, Crystal Structure Of Murine Olfactory Marker Protein
pdb|1JOD|A Chain A, Crystal Structure Of Murine Olfactory Marker Protein In
Spacegroup P43212
pdb|1JOD|B Chain B, Crystal Structure Of Murine Olfactory Marker Protein In
Spacegroup P43212
Length = 162
Score = 25.4 bits (54), Expect = 9.4
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 128 DKQNKEMSELLTKLSQDLVSQIALIQKALKEQEEKAEKPLKSNAPA 173
D K+ E L QDL Q L ++LK++ EK + K PA
Sbjct: 3 DGPQKQQLEXPLVLDQDLTQQXRLRVESLKQRGEKKQDGEKLIRPA 48
>pdb|1ID3|H Chain H, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
pdb|1ID3|D Chain D, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
Length = 130
Score = 25.4 bits (54), Expect = 9.4
Identities = 15/36 (41%), Positives = 20/36 (54%), Gaps = 1/36 (2%)
Query: 163 AEKPLKSNAPANKTPSLKAESPKNQEGKTQEKAKIE 198
AEK S APA K P+ K S + +GK + K + E
Sbjct: 4 AEKKPASKAPAEKKPAAKKTS-TSVDGKKRSKVRKE 38
>pdb|4HB1| A Designed Four Helix Bundle Protein
Length = 108
Score = 25.4 bits (54), Expect = 9.4
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 99 QANTLKQQSQTLEDLRNEIHANQQAIQQLDKQNKEMSELLTK--LSQDLVSQ-IALIQKA 155
QA L QQ+Q L +QA+QQ + ++ EL K ++L+ Q + Q+
Sbjct: 12 QAQQLLQQAQELAKKGGGEELLKQALQQAQQLLQQAQELAKKGGGGEELLKQALQQAQQL 71
Query: 156 LKEQEEKAEK 165
L++ +E A+K
Sbjct: 72 LQQAQELAKK 81
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.311 0.126 0.338
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,651,586
Number of Sequences: 13198
Number of extensions: 63176
Number of successful extensions: 225
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 206
Number of HSP's gapped (non-prelim): 34
length of query: 331
length of database: 2,899,336
effective HSP length: 89
effective length of query: 242
effective length of database: 1,724,714
effective search space: 417380788
effective search space used: 417380788
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)