BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645739|ref|NP_207916.1| peptidoglycan associated
lipoprotein precursor (omp18) [Helicobacter pylori 26695]
(179 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Rep... 30 0.21
pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase >gi|194... 30 0.21
pdb|1BC1| Recombinant Rat Annexin V, Quadruple Mutant (T7... 27 1.4
pdb|1JF0|A Chain A, The Crystal Structure Of Obelin From Ob... 27 1.4
pdb|1BC3| Recombinant Rat Annexin V, Triple Mutant (T72k,... 27 1.4
pdb|1G5N|A Chain A, Annexin V Complex With Heparin Oligosac... 27 1.8
pdb|2RAN| Annexin V 27 1.8
pdb|1BCW| Recombinant Rat Annexin V, T72a Mutant 27 1.8
pdb|1BCY| Recombinant Rat Annexin V, T72k Mutant 27 1.8
pdb|1BCZ| Recombinant Rat Annexin V, T72s Mutant 27 1.8
pdb|1BC0| Recombinant Rat Annexin V, W185a Mutant 27 1.8
pdb|2FRV|B Chain B, Crystal Structure Of The Oxidized Form ... 26 2.3
pdb|1LL0|A Chain A, Crystal Structure Of Rabbit Muscle Glyc... 26 2.3
pdb|1LL2|A Chain A, Crystal Structure Of Rabbit Muscle Glyc... 26 2.3
pdb|1FRV|B Chain B, Crystal Structure Of The Oxidized Form ... 26 3.0
pdb|1SLY| Complex Of The 70-Kda Soluble Lytic Transglycos... 25 4.0
pdb|1KQP|A Chain A, Nh3-Dependent Nad+ Synthetase From Baci... 25 5.2
pdb|1IH8|A Chain A, Nh3-Dependent Nad+ Synthetase From Baci... 25 5.2
pdb|1EYS|C Chain C, Crystal Structure Of Photosynthetic Rea... 25 6.7
pdb|1SAV| Human Annexin V With Proline Substitution By Th... 25 6.7
pdb|1HVD| Annexin V (Lipocortin V, Endonexin Ii, Placenta... 25 6.7
pdb|1ANW|A Chain A, Annexin V >gi|809186|pdb|1ANW|B Chain B... 25 6.7
pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycini... 25 6.7
pdb|1AVH|A Chain A, Annexin V (Hexagonal Crystal Form) >gi|... 25 6.7
pdb|1HVF| Annexin V (Lipocortin V, Endonexin Ii, Placenta... 25 6.7
pdb|1HVG| Annexin V (Lipocortin V, Endonexin Ii, Placenta... 25 6.7
>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1D7F|B Chain B, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1DED|A Chain A, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor Acarbose, At 2.0 A Resolution
pdb|1DED|B Chain B, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor Acarbose, At 2.0 A Resolution
Length = 686
Score = 29.6 bits (65), Expect = 0.21
Identities = 16/48 (33%), Positives = 25/48 (51%), Gaps = 1/48 (2%)
Query: 80 FDKYEIKESDQETLDEIVQKAKENHMQ-VLLEGNTDEFGSSEYNQALG 126
+D +E+ DQ T+ ++ A Q V L GN E G+ + N A+G
Sbjct: 576 YDNFEVLTGDQVTVRFVINNATTALGQNVFLTGNVSELGNWDPNNAIG 623
>pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase
pdb|1PAM|B Chain B, Cyclodextrin Glucanotransferase
pdb|1I75|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With 1-
Deoxynojirimycin
pdb|1I75|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With 1-
Deoxynojirimycin
Length = 686
Score = 29.6 bits (65), Expect = 0.21
Identities = 16/48 (33%), Positives = 25/48 (51%), Gaps = 1/48 (2%)
Query: 80 FDKYEIKESDQETLDEIVQKAKENHMQ-VLLEGNTDEFGSSEYNQALG 126
+D +E+ DQ T+ ++ A Q V L GN E G+ + N A+G
Sbjct: 576 YDNFEVLTGDQVTVRFVINNATTALGQNVFLTGNVSELGNWDPNNAIG 623
>pdb|1BC1| Recombinant Rat Annexin V, Quadruple Mutant (T72k, S144k, S228k,
S303k)
Length = 319
Score = 26.9 bits (58), Expect = 1.4
Identities = 14/72 (19%), Positives = 34/72 (46%), Gaps = 6/72 (8%)
Query: 80 FDKYEIKES------DQETLDEIVQKAKENHMQVLLEGNTDEFGSSEYNQALGVKRTLSV 133
+D YE+K + D++ L EI+ ++ + + +E+GS+ + +G +
Sbjct: 89 YDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDVVGDTKGYYQ 148
Query: 134 KNALVIKGVEKD 145
+ +V+ +D
Sbjct: 149 RMLVVLLQANRD 160
>pdb|1JF0|A Chain A, The Crystal Structure Of Obelin From Obelia Geniculata At
1.82 A Resolution
Length = 195
Score = 26.9 bits (58), Expect = 1.4
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 78 FDFDKYEIKESDQETLDEIVQKAKEN 103
F FD +I + Q TLDEIV KA ++
Sbjct: 24 FMFDYLDINGNGQITLDEIVSKASDD 49
>pdb|1BC3| Recombinant Rat Annexin V, Triple Mutant (T72k, S144k, S228k)
Length = 319
Score = 26.9 bits (58), Expect = 1.4
Identities = 14/72 (19%), Positives = 34/72 (46%), Gaps = 6/72 (8%)
Query: 80 FDKYEIKES------DQETLDEIVQKAKENHMQVLLEGNTDEFGSSEYNQALGVKRTLSV 133
+D YE+K + D++ L EI+ ++ + + +E+GS+ + +G +
Sbjct: 89 YDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDVVGDTKGYYQ 148
Query: 134 KNALVIKGVEKD 145
+ +V+ +D
Sbjct: 149 RMLVVLLQANRD 160
>pdb|1G5N|A Chain A, Annexin V Complex With Heparin Oligosaccharides
pdb|1A8A| Rat Annexin V Complexed With Glycerophosphoserine
pdb|1A8B| Rat Annexin V Complexed With Glycerophosphoethanolamine
Length = 318
Score = 26.6 bits (57), Expect = 1.8
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 80 FDKYEIKES------DQETLDEIVQKAKENHMQVLLEGNTDEFGSSEYNQALG 126
+D YE+K + D++ L EI+ ++ + + +E+GS+ + +G
Sbjct: 88 YDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDVVG 140
>pdb|2RAN| Annexin V
Length = 316
Score = 26.6 bits (57), Expect = 1.8
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 80 FDKYEIKES------DQETLDEIVQKAKENHMQVLLEGNTDEFGSSEYNQALG 126
+D YE+K + D++ L EI+ ++ + + +E+GS+ + +G
Sbjct: 88 YDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDVVG 140
>pdb|1BCW| Recombinant Rat Annexin V, T72a Mutant
Length = 319
Score = 26.6 bits (57), Expect = 1.8
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 80 FDKYEIKES------DQETLDEIVQKAKENHMQVLLEGNTDEFGSSEYNQALG 126
+D YE+K + D++ L EI+ ++ + + +E+GS+ + +G
Sbjct: 89 YDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDVVG 141
>pdb|1BCY| Recombinant Rat Annexin V, T72k Mutant
Length = 319
Score = 26.6 bits (57), Expect = 1.8
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 80 FDKYEIKES------DQETLDEIVQKAKENHMQVLLEGNTDEFGSSEYNQALG 126
+D YE+K + D++ L EI+ ++ + + +E+GS+ + +G
Sbjct: 89 YDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDVVG 141
>pdb|1BCZ| Recombinant Rat Annexin V, T72s Mutant
Length = 319
Score = 26.6 bits (57), Expect = 1.8
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 80 FDKYEIKES------DQETLDEIVQKAKENHMQVLLEGNTDEFGSSEYNQALG 126
+D YE+K + D++ L EI+ ++ + + +E+GS+ + +G
Sbjct: 89 YDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDVVG 141
>pdb|1BC0| Recombinant Rat Annexin V, W185a Mutant
Length = 319
Score = 26.6 bits (57), Expect = 1.8
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 80 FDKYEIKES------DQETLDEIVQKAKENHMQVLLEGNTDEFGSSEYNQALG 126
+D YE+K + D++ L EI+ ++ + + +E+GS+ + +G
Sbjct: 89 YDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDVVG 141
>pdb|2FRV|B Chain B, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|D Chain D, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|F Chain F, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|H Chain H, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|J Chain J, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|L Chain L, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
Length = 536
Score = 26.2 bits (56), Expect = 2.3
Identities = 33/159 (20%), Positives = 59/159 (36%), Gaps = 32/159 (20%)
Query: 21 HKMDNKTVAGDVSAKTVQTAPVTTEPAPEKEEPKQEPAPVVEEKPAVESGT--IIASIYF 78
H +D VA ++A + A + + +P+K + A + K VESG I + YF
Sbjct: 116 HALDWVNVANALNADPAKAARLANDLSPKKTTTESLKAVQAKVKALVESGQLGIFTNAYF 175
Query: 79 DFDKYEIKESDQETLDEIVQKAKENHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNALV 138
H +L D ++ Y +AL V+ + A+
Sbjct: 176 ----------------------LGGHPAYVLPAEVDLIATAHYLEALRVQ--VKAARAMA 211
Query: 139 IKGVEKDMIK------TISFGETKPKCAQKTRECYKENR 171
I G + + ++ +P+ + R+ YKE R
Sbjct: 212 IFGAKNPHTQFTVVGGCTNYDSLRPERIAEFRKLYKEVR 250
>pdb|1LL0|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|B Chain B, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|C Chain C, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|D Chain D, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|E Chain E, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|F Chain F, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|G Chain G, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|H Chain H, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|I Chain I, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|J Chain J, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 339
Score = 26.2 bits (56), Expect = 2.3
Identities = 17/52 (32%), Positives = 24/52 (45%)
Query: 4 SSVFSFLVAFLLVAGCSHKMDNKTVAGDVSAKTVQTAPVTTEPAPEKEEPKQ 55
+SV L F LV + V+G VS ++ P TT+P EE K+
Sbjct: 261 TSVVPLLQQFGLVQDTCSYQHVEDVSGAVSHLSLGETPATTQPFVSSEERKE 312
>pdb|1LL2|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Complexed
With Udp-Glucose And Manganese
pdb|1LL3|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 333
Score = 26.2 bits (56), Expect = 2.3
Identities = 17/52 (32%), Positives = 24/52 (45%)
Query: 4 SSVFSFLVAFLLVAGCSHKMDNKTVAGDVSAKTVQTAPVTTEPAPEKEEPKQ 55
+SV L F LV + V+G VS ++ P TT+P EE K+
Sbjct: 255 TSVVPLLQQFGLVQDTCSYQHVEDVSGAVSHLSLGETPATTQPFVSSEERKE 306
>pdb|1FRV|B Chain B, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|1FRV|D Chain D, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
Length = 536
Score = 25.8 bits (55), Expect = 3.0
Identities = 33/159 (20%), Positives = 58/159 (35%), Gaps = 32/159 (20%)
Query: 21 HKMDNKTVAGDVSAKTVQTAPVTTEPAPEKEEPKQEPAPVVEEKPAVESGT--IIASIYF 78
H +D VA ++A + A + + +P K + A + K VESG I + YF
Sbjct: 116 HALDWVNVANALNADPAKAARLANDLSPRKTTTESLKAVQAKVKALVESGQLGIFTNAYF 175
Query: 79 DFDKYEIKESDQETLDEIVQKAKENHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNALV 138
H +L D ++ Y +AL V+ + A+
Sbjct: 176 ----------------------LGGHPAYVLPAEVDLIATAHYLEALRVQ--VKAARAMA 211
Query: 139 IKGVEKDMIK------TISFGETKPKCAQKTRECYKENR 171
I G + + ++ +P+ + R+ YKE R
Sbjct: 212 IFGAKNPHTQFTVVGGCTNYDSLRPERIAEFRKLYKEVR 250
>pdb|1SLY| Complex Of The 70-Kda Soluble Lytic Transglycosylase With Bulgecin
A
Length = 618
Score = 25.4 bits (54), Expect = 4.0
Identities = 17/46 (36%), Positives = 23/46 (49%), Gaps = 2/46 (4%)
Query: 111 GNTDEFGSSEYNQALGVKRTLSVKNALVIKGVEKDMIKTISFGETK 156
GN F S+ YN LG RT +A I V +++I F ET+
Sbjct: 542 GNNRIFSSAAYNAGLGRVRTWLGNSAGRIDAVA--FVESIPFSETR 585
>pdb|1KQP|A Chain A, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis At 1
A Resolution
pdb|1KQP|B Chain B, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis At 1
A Resolution
Length = 271
Score = 25.0 bits (53), Expect = 5.2
Identities = 15/53 (28%), Positives = 25/53 (46%), Gaps = 4/53 (7%)
Query: 47 APEKEEPKQEPAPVVEEKPAVESGTIIASIYFDFDKY----EIKESDQETLDE 95
APE+ K+ A +++EKP T + Y + D Y E+ E L++
Sbjct: 198 APERLYLKEPTADLLDEKPQQSDETELGISYDEIDDYLEGKEVSAKVSEALEK 250
>pdb|1IH8|A Chain A, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis
Complexed With Amp-Cpp And Mg2+ Ions.
pdb|2NSY|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis In Complex With Nad-Adenylate
pdb|2NSY|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis In Complex With Nad-Adenylate
pdb|1NSY|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis
pdb|1NSY|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis
pdb|1EE1|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Atp, Two
Molecules Deamido-Nad+ And One Mg2+ Ion
pdb|1FYD|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Amp, One
Pyrophosphate Ion And One Mg2+ Ion
pdb|1IH8|B Chain B, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis
Complexed With Amp-Cpp And Mg2+ Ions.
pdb|1EE1|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Atp, Two
Molecules Deamido-Nad+ And One Mg2+ Ion
pdb|1FYD|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Amp, One
Pyrophosphate Ion And One Mg2+ Ion
pdb|1IFX|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With Two Molecules
Deamido-Nad
pdb|1IFX|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With Two Molecules
Deamido-Nad
Length = 271
Score = 25.0 bits (53), Expect = 5.2
Identities = 15/53 (28%), Positives = 25/53 (46%), Gaps = 4/53 (7%)
Query: 47 APEKEEPKQEPAPVVEEKPAVESGTIIASIYFDFDKY----EIKESDQETLDE 95
APE+ K+ A +++EKP T + Y + D Y E+ E L++
Sbjct: 198 APERLYLKEPTADLLDEKPQQSDETELGISYDEIDDYLEGKEVSAKVSEALEK 250
>pdb|1EYS|C Chain C, Crystal Structure Of Photosynthetic Reaction Center From A
Thermophilic Bacterium, Thermochromatium Tepidum
Length = 382
Score = 24.6 bits (52), Expect = 6.7
Identities = 11/29 (37%), Positives = 13/29 (43%)
Query: 38 QTAPVTTEPAPEKEEPKQEPAPVVEEKPA 66
+ P EP + EPAPV E PA
Sbjct: 348 EAVPAAAEPGAAEAAGSVEPAPVEEVAPA 376
>pdb|1SAV| Human Annexin V With Proline Substitution By Thioproline
Length = 320
Score = 24.6 bits (52), Expect = 6.7
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 80 FDKYEIKES------DQETLDEIVQKAKENHMQVLLEGNTDEFGSSEYNQALG 126
+D YE+K + +++ L EI+ ++ + + +E+GSS + +G
Sbjct: 91 YDAYELKHALKGAGTNEKVLTEIIASRTXEELRAIKQVYEEEYGSSLEDDVVG 143
>pdb|1HVD| Annexin V (Lipocortin V, Endonexin Ii, Placental Anticoagulant
Protein) (Calcium Ions Are Visible) Mutation With Glu 17
Replaced By Gly (E17g)
Length = 319
Score = 24.6 bits (52), Expect = 6.7
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 80 FDKYEIKES------DQETLDEIVQKAKENHMQVLLEGNTDEFGSSEYNQALG 126
+D YE+K + +++ L EI+ ++ + + +E+GSS + +G
Sbjct: 90 YDAYELKHALKGAGTNEKVLTEIIASRTPEELRAIKQVYEEEYGSSLEDDVVG 142
>pdb|1ANW|A Chain A, Annexin V
pdb|1ANW|B Chain B, Annexin V
pdb|1ANX|A Chain A, Annexin V
pdb|1ANX|B Chain B, Annexin V
pdb|1ANX|C Chain C, Annexin V
Length = 319
Score = 24.6 bits (52), Expect = 6.7
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 80 FDKYEIKES------DQETLDEIVQKAKENHMQVLLEGNTDEFGSSEYNQALG 126
+D YE+K + +++ L EI+ ++ + + +E+GSS + +G
Sbjct: 90 YDAYELKHALKGAGTNEKVLTEIIASRTPEELRAIKQVYEEEYGSSLEDDVVG 142
>pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|B Chain B, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|C Chain C, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
Length = 476
Score = 24.6 bits (52), Expect = 6.7
Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 27/113 (23%)
Query: 79 DFDKYEIKESDQETLDEIVQKAKENHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNALV 138
+F KY+ ++ ++ Q+ +EN +L G T EF ++ + + L +N
Sbjct: 172 EFLKYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGEN--- 228
Query: 139 IKGVEKDMIKTISFG-----------------------ETKPKCAQKTRECYK 168
+G +K I T+ G + KP+C K + C +
Sbjct: 229 -EGEDKGAIVTVKGGLSVIKPPTDEQQQRPQEEEEEEEDEKPQCKGKDKHCQR 280
>pdb|1AVH|A Chain A, Annexin V (Hexagonal Crystal Form)
pdb|1AVH|B Chain B, Annexin V (Hexagonal Crystal Form)
pdb|1HAK|A Chain A, Crystal Structure Of Recombinant Human Placental Annexin V
Complexed With K-201 As A Calcium Channel Activity
Inhibitor
pdb|1HAK|B Chain B, Crystal Structure Of Recombinant Human Placental Annexin V
Complexed With K-201 As A Calcium Channel Activity
Inhibitor
pdb|1AVR| Annexin V (Rhombohedral Crystal Form)
Length = 320
Score = 24.6 bits (52), Expect = 6.7
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 80 FDKYEIKES------DQETLDEIVQKAKENHMQVLLEGNTDEFGSSEYNQALG 126
+D YE+K + +++ L EI+ ++ + + +E+GSS + +G
Sbjct: 91 YDAYELKHALKGAGTNEKVLTEIIASRTPEELRAIKQVYEEEYGSSLEDDVVG 143
>pdb|1HVF| Annexin V (Lipocortin V, Endonexin Ii, Placental Anticoagulant
Protein) Mutant With Glu 17 Replaced By Gly, Glu 78
Replaced By Gln (E17g,E78q) Complexed With Calcium
Length = 319
Score = 24.6 bits (52), Expect = 6.7
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 80 FDKYEIKES------DQETLDEIVQKAKENHMQVLLEGNTDEFGSSEYNQALG 126
+D YE+K + +++ L EI+ ++ + + +E+GSS + +G
Sbjct: 90 YDAYELKHALKGAGTNEKVLTEIIASRTPEELRAIKQVYEEEYGSSLEDDVVG 142
>pdb|1HVG| Annexin V (Lipocortin V, Endonexin Ii, Placental Anticoagulant
Protein) (Calcium Ions Are Visible) Mutant With Glu 78
Replaced By Gln (E78q) (Second Crystal Form)
pdb|1HVE| Annexin V (Lipocortin V, Endonexin Ii, Placental Anticoagulant
Protein) (Calcium Ions Are Visible) Mutant With Glu 78
Replaced By Gln (E78q)
Length = 319
Score = 24.6 bits (52), Expect = 6.7
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 80 FDKYEIKES------DQETLDEIVQKAKENHMQVLLEGNTDEFGSSEYNQALG 126
+D YE+K + +++ L EI+ ++ + + +E+GSS + +G
Sbjct: 90 YDAYELKHALKGAGTNEKVLTEIIASRTPEELRAIKQVYEEEYGSSLEDDVVG 142
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.311 0.128 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 953,146
Number of Sequences: 13198
Number of extensions: 38381
Number of successful extensions: 111
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 103
Number of HSP's gapped (non-prelim): 26
length of query: 179
length of database: 2,899,336
effective HSP length: 82
effective length of query: 97
effective length of database: 1,817,100
effective search space: 176258700
effective search space used: 176258700
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)