BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645741|ref|NP_207918.1| hypothetical protein
[Helicobacter pylori 26695]
(193 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Co... 32 0.036
pdb|1DN1|B Chain B, Crystal Structure Of The Neuronal-Sec1S... 30 0.14
pdb|1BR0|A Chain A, Three Dimensional Structure Of The N-Te... 30 0.14
pdb|1EZ3|A Chain A, Crystal Structure Of The Neuronal T-Sna... 30 0.14
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 29 0.31
pdb|1LDJ|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxsk... 29 0.31
pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxsk... 29 0.31
pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta >g... 29 0.40
pdb|1CII| Colicin Ia 29 0.40
pdb|1QGK|B Chain B, Structure Of Importin Beta Bound To The... 29 0.40
pdb|1GMJ|A Chain A, The Structure Of Bovine If1, The Regula... 28 0.90
pdb|1IMU|A Chain A, Solution Structure Of Hi0257, A Ribosom... 27 1.5
pdb|1FS9|A Chain A, Cytochrome C Nitrite Reductase From Wol... 26 2.6
pdb|1AQ5|A Chain A, High-Resolution Solution Nmr Structure ... 26 2.6
pdb|1JTH|C Chain C, Crystal Structure And Biophysical Prope... 26 3.4
pdb|1SFC|C Chain C, Neuronal Synaptic Fusion Complex >gi|67... 25 4.5
pdb|1FDZ|A Chain A, N-Acetylneuraminate Lyase In Complex Wi... 25 4.5
pdb|1NAL|1 Chain 1, Mol_id: 1; Molecule: N-Acetylneuraminat... 25 4.5
pdb|2TMA|A Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain... 25 5.8
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor >gi|1697482... 25 5.8
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 25 5.8
pdb|1FS8|A Chain A, Cytochrome C Nitrite Reductase From Wol... 25 5.8
pdb|1KIL|C Chain C, Three-Dimensional Structure Of The Comp... 25 5.8
pdb|1L4A|C Chain C, X-Ray Structure Of The Neuronal Complex... 25 7.6
pdb|1G5V|A Chain A, Solution Structure Of The Tudor Domain ... 24 9.9
pdb|1X11|A Chain A, X11 Ptb Domain >gi|2780944|pdb|1AQC|A C... 24 9.9
pdb|1LRZ|A Chain A, X-Ray Crystal Structure Of Staphylococc... 24 9.9
pdb|1IRJ|A Chain A, Crystal Structure Of The Mrp14 Complexe... 24 9.9
>pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp.
pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
Length = 592
Score = 32.3 bits (72), Expect = 0.036
Identities = 26/124 (20%), Positives = 57/124 (45%), Gaps = 20/124 (16%)
Query: 5 KEGDFIDPKEQEESLENIFSSLNDFQEKTDANAQKNEQKNEQEE---------------- 48
K+ + +P++ ++ E + + L + TDA Q ++ E+E+
Sbjct: 444 KKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASA 503
Query: 49 ----EQRRLKEQQRLRKNQKNQEMLKGLQQNLNQFAQKLESVKNKTLDLQIPKQDGVDEK 104
E +R EQ +K + QE LK L + + +L + +TL L++ +Q+ + ++
Sbjct: 504 KMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKE 563
Query: 105 AYQE 108
+Q+
Sbjct: 564 GFQK 567
>pdb|1DN1|B Chain B, Crystal Structure Of The Neuronal-Sec1SYNTAXIN 1A COMPLEX
Length = 267
Score = 30.4 bits (67), Expect = 0.14
Identities = 19/53 (35%), Positives = 25/53 (46%), Gaps = 1/53 (1%)
Query: 11 DPKEQEESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQ 63
D K +EE LE + S + K + + EQ EQEE R R+RK Q
Sbjct: 68 DEKTKEE-LEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQ 119
>pdb|1BR0|A Chain A, Three Dimensional Structure Of The N-Terminal Domain Of
Syntaxin 1a
Length = 120
Score = 30.4 bits (67), Expect = 0.14
Identities = 19/53 (35%), Positives = 25/53 (46%), Gaps = 1/53 (1%)
Query: 11 DPKEQEESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQ 63
D K +EE LE + S + K + + EQ EQEE R R+RK Q
Sbjct: 42 DEKTKEE-LEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQ 93
>pdb|1EZ3|A Chain A, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a
pdb|1EZ3|B Chain B, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a
pdb|1EZ3|C Chain C, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a
Length = 127
Score = 30.4 bits (67), Expect = 0.14
Identities = 19/53 (35%), Positives = 25/53 (46%), Gaps = 1/53 (1%)
Query: 11 DPKEQEESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQ 63
D K +EE LE + S + K + + EQ EQEE R R+RK Q
Sbjct: 45 DEKTKEE-LEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQ 96
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 29.3 bits (64), Expect = 0.31
Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 18/100 (18%)
Query: 13 KEQEESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRL--------------KEQQR 58
+E+ ++ + + Q+K +A ++ EQK+ Q E++ L E+ R
Sbjct: 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR 915
Query: 59 LRKNQKNQEMLKGLQQNLNQFAQKLESVKNKTLDLQIPKQ 98
+R K QE L++ L++ ++E + ++ LQ K+
Sbjct: 916 VRLAAKKQE----LEEILHEMEARIEEEEERSQQLQAEKK 951
Score = 26.9 bits (58), Expect = 1.5
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 17/100 (17%)
Query: 13 KEQEESLENIFSSLNDFQEKTDAN---------------AQKNEQKNEQEEEQRRLKEQQ 57
KE E+ + N QEK A A+K E + E + R++E++
Sbjct: 881 KELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEE 940
Query: 58 RLRKNQKNQEMLKGLQQNLNQFAQKLESVKNKTLDLQIPK 97
++Q+ Q K +QQ + ++LE + LQ+ K
Sbjct: 941 E--RSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEK 978
Score = 26.2 bits (56), Expect = 2.6
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 38 QKNEQKNEQEEEQRRLKEQQRLRKNQKNQEMLKGLQQNLNQFAQKLESVKNK 89
++ E+ ++EE +R KE+Q QK + LK L+Q Q ++ ++ K
Sbjct: 854 RQEEEMQAKDEELQRTKERQ-----QKAEAELKELEQKHTQLCEEKNLLQEK 900
>pdb|1LDJ|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 760
Score = 29.3 bits (64), Expect = 0.31
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 14/73 (19%)
Query: 39 KNEQKNEQEEEQRRLKEQQRL------------RKNQKNQEML-KGLQQNLNQFAQKLES 85
K EQK EQE + ++E ++L RK K+Q++L + L Q ++F ++
Sbjct: 673 KTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPV 732
Query: 86 VKNKTLDLQIPKQ 98
+K K +D+ I K+
Sbjct: 733 IK-KCIDILIEKE 744
>pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 366
Score = 29.3 bits (64), Expect = 0.31
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 14/73 (19%)
Query: 39 KNEQKNEQEEEQRRLKEQQRL------------RKNQKNQEML-KGLQQNLNQFAQKLES 85
K EQK EQE + ++E ++L RK K+Q++L + L Q ++F ++
Sbjct: 279 KTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPV 338
Query: 86 VKNKTLDLQIPKQ 98
+K K +D+ I K+
Sbjct: 339 IK-KCIDILIEKE 350
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 28.9 bits (63), Expect = 0.40
Identities = 25/109 (22%), Positives = 50/109 (44%), Gaps = 7/109 (6%)
Query: 5 KEGDFIDPKEQEESLENIFSSLNDFQEKTDANA----QKNEQKNEQEEEQRRLKEQQRLR 60
+E + K +ES E S++ D ++K +A Q + + Q RLK++
Sbjct: 118 REKQIAELKALKESSE---SNIKDIKKKLEAKRLDRIQVXXRSTSDKAAQERLKKEINNS 174
Query: 61 KNQKNQEMLKGLQQNLNQFAQKLESVKNKTLDLQIPKQDGVDEKAYQEW 109
Q+ + +K L + ++ QKLE + + L K+ + ++A E+
Sbjct: 175 HIQEVVQTIKLLTEKTARYQQKLEEKQAENLRAIQEKEGQLQQEAVAEY 223
>pdb|1CII| Colicin Ia
Length = 602
Score = 28.9 bits (63), Expect = 0.40
Identities = 24/91 (26%), Positives = 43/91 (46%), Gaps = 16/91 (17%)
Query: 10 IDPKEQEESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRLRK-----NQK 64
+D + + S E+ +S + + +A+ NEQK+ + LKE++ +R NQK
Sbjct: 359 LDARNKITSAESAVNSA-----RNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQK 413
Query: 65 ------NQEMLKGLQQNLNQFAQKLESVKNK 89
Q+ LK + +N + L+SV K
Sbjct: 414 IAEEKRKQDELKATKDAINFTTEFLKSVSEK 444
>pdb|1QGK|B Chain B, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
Length = 44
Score = 28.9 bits (63), Expect = 0.40
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 39 KNEQKNEQEEEQRRLKEQQRLRKNQKNQEMLK 70
KN+ K+ E +RR++ LRK +K+ +MLK
Sbjct: 8 KNKGKDSTEMRRRRIEVNVELRKAKKDDQMLK 39
>pdb|1GMJ|A Chain A, The Structure Of Bovine If1, The Regulatory Subunit Of
Mitochondrial F-Atpase
pdb|1GMJ|B Chain B, The Structure Of Bovine If1, The Regulatory Subunit Of
Mitochondrial F-Atpase
pdb|1GMJ|C Chain C, The Structure Of Bovine If1, The Regulatory Subunit Of
Mitochondrial F-Atpase
pdb|1GMJ|D Chain D, The Structure Of Bovine If1, The Regulatory Subunit Of
Mitochondrial F-Atpase
Length = 84
Score = 27.7 bits (60), Expect = 0.90
Identities = 22/82 (26%), Positives = 37/82 (44%), Gaps = 7/82 (8%)
Query: 17 ESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQEM------LK 70
ES +N+ SS ++ A K EQ E+ + R KEQ K K E+ ++
Sbjct: 3 ESGDNVRSSAGAVRDAGGAFG-KREQAEEERYFRARAKEQLAALKKHKENEISHHAKEIE 61
Query: 71 GLQQNLNQFAQKLESVKNKTLD 92
LQ+ + + Q ++ +K D
Sbjct: 62 RLQKEIERHKQSIKKLKQSEDD 83
>pdb|1IMU|A Chain A, Solution Structure Of Hi0257, A Ribosome Binding Protein
Length = 107
Score = 26.9 bits (58), Expect = 1.5
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 20 ENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKE 55
++++ ++N+ +EK + K + K+E RLK+
Sbjct: 68 DDMYKAINEVEEKLERQLNKLQHKSESRRADERLKD 103
>pdb|1FS9|A Chain A, Cytochrome C Nitrite Reductase From Wolinella
Succinogenes- Azide Complex
Length = 507
Score = 26.2 bits (56), Expect = 2.6
Identities = 24/86 (27%), Positives = 35/86 (39%), Gaps = 9/86 (10%)
Query: 72 LQQNLNQFAQKLESVKNKTLDLQIPKQDGVDEKAYQEWYAQIYQILYKGWKGVFYHKASV 131
L N+N+ +K NKT Q G++ KA E +A+ Y + WK K S
Sbjct: 21 LASNINE-REKERVALNKTAHSQ-----GIEGKAMSEEWARYYPRQFDSWKKT---KESD 71
Query: 132 SALIMIAKDGEFDYTILSYSDFKDYN 157
+ M+ + Y KDYN
Sbjct: 72 NITDMLKEKPALVVAWAGYPFSKDYN 97
>pdb|1AQ5|A Chain A, High-Resolution Solution Nmr Structure Of The Trimeric
Coiled-Coil Domain Of Chicken Cartilage Matrix Protein,
20 Structures
pdb|1AQ5|B Chain B, High-Resolution Solution Nmr Structure Of The Trimeric
Coiled-Coil Domain Of Chicken Cartilage Matrix Protein,
20 Structures
pdb|1AQ5|C Chain C, High-Resolution Solution Nmr Structure Of The Trimeric
Coiled-Coil Domain Of Chicken Cartilage Matrix Protein,
20 Structures
Length = 47
Score = 26.2 bits (56), Expect = 2.6
Identities = 10/28 (35%), Positives = 20/28 (70%)
Query: 64 KNQEMLKGLQQNLNQFAQKLESVKNKTL 91
K +E++ LQQ L A+++E+++NK +
Sbjct: 20 KVEELINTLQQKLEAVAKRIEALENKII 47
>pdb|1JTH|C Chain C, Crystal Structure And Biophysical Properties Of A
Complex Between The N-Terminal Region Of Snap25 And The
Snare Region Of Syntaxin 1a
pdb|1JTH|A Chain A, Crystal Structure And Biophysical Properties Of A
Complex Between The N-Terminal Region Of Snap25 And The
Snare Region Of Syntaxin 1a
Length = 82
Score = 25.8 bits (55), Expect = 3.4
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 16 EESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKE-QQRLRKNQKNQE 67
+ESLE+ L +E DA + +EQ E+ R++E ++ K+ K E
Sbjct: 23 DESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERIEEGMDQINKDMKEAE 75
>pdb|1SFC|C Chain C, Neuronal Synaptic Fusion Complex
pdb|1SFC|K Chain K, Neuronal Synaptic Fusion Complex
pdb|1SFC|G Chain G, Neuronal Synaptic Fusion Complex
Length = 83
Score = 25.4 bits (54), Expect = 4.5
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 16 EESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQEMLKGLQQN 75
+ESLE+ L +E DA + +EQ E+ R++E N NQ+M K ++N
Sbjct: 23 DESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGM----NHINQDM-KEAEKN 77
Query: 76 LNQFAQ 81
L +
Sbjct: 78 LKDLGK 83
>pdb|1FDZ|A Chain A, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDZ|D Chain D, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDY|A Chain A, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
pdb|1FDY|B Chain B, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
pdb|1FDY|C Chain C, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
pdb|1FDY|D Chain D, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
pdb|1FDZ|B Chain B, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDZ|C Chain C, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
Length = 297
Score = 25.4 bits (54), Expect = 4.5
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 66 QEMLKGLQQNLNQFAQKLESVKNKTLDLQI 95
Q ++K L++ Q AQKL++ NK +DL I
Sbjct: 218 QGIVKALKEGDIQTAQKLQTECNKVIDLLI 247
>pdb|1NAL|1 Chain 1, Mol_id: 1; Molecule: N-Acetylneuraminate Lyase; Chain: 1,
2, 3, 4; Ec: 4.1.3.3
pdb|1NAL|2 Chain 2, Mol_id: 1; Molecule: N-Acetylneuraminate Lyase; Chain: 1,
2, 3, 4; Ec: 4.1.3.3
pdb|1NAL|3 Chain 3, Mol_id: 1; Molecule: N-Acetylneuraminate Lyase; Chain: 1,
2, 3, 4; Ec: 4.1.3.3
pdb|1NAL|4 Chain 4, Mol_id: 1; Molecule: N-Acetylneuraminate Lyase; Chain: 1,
2, 3, 4; Ec: 4.1.3.3
Length = 297
Score = 25.4 bits (54), Expect = 4.5
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 66 QEMLKGLQQNLNQFAQKLESVKNKTLDLQI 95
Q ++K L++ Q AQKL++ NK +DL I
Sbjct: 218 QGIVKALKEGDIQTAQKLQTECNKVIDLLI 247
>pdb|2TMA|A Chain A, Tropomyosin
pdb|2TMA|B Chain B, Tropomyosin
Length = 284
Score = 25.0 bits (53), Expect = 5.8
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 34 DANAQKNEQKNEQEEEQRRLKEQQRL-----RKNQKNQEMLKGLQQNLNQFAQKLESVKN 88
++ AQK+E+K E +E Q LKE + + RK ++ L ++ +L + ++ E +
Sbjct: 131 ESRAQKDEEKMEIQEIQ--LKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEG 188
Query: 89 KTLDLQ 94
K +L+
Sbjct: 189 KCAELE 194
>pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf):
Wild- Type Lf Complexed With The N-Terminal Sequence Of
Mapkk2
Length = 776
Score = 25.0 bits (53), Expect = 5.8
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 30 QEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQEMLKGLQQNLNQFAQK-LESVKN 88
++ D N +K+E++N+ +EE + + ++ K +E +K + A+K LE V +
Sbjct: 15 EKNKDENKRKDEERNKTQEEHLKEIMKHIVKIEVKGEEAVK------KEAAEKLLEKVPS 68
Query: 89 KTLDL 93
L++
Sbjct: 69 DVLEM 73
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 25.0 bits (53), Expect = 5.8
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 34 DANAQKNEQKNEQEEEQRRLKEQQRL-----RKNQKNQEMLKGLQQNLNQFAQKLESVKN 88
++ AQK+E+K E +E Q LKE + + RK ++ L ++ +L + ++ E +
Sbjct: 131 ESRAQKDEEKMEIQEIQ--LKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEG 188
Query: 89 KTLDLQ 94
K +L+
Sbjct: 189 KCAELE 194
>pdb|1FS8|A Chain A, Cytochrome C Nitrite Reductase From Wolinella
Succinogenes- Sulfate Complex
pdb|1FS7|A Chain A, Cytochrome C Nitrite Reductase From Wolinella Succinogenes
Length = 485
Score = 25.0 bits (53), Expect = 5.8
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 75 NLNQFAQKLESVKNKTLDLQIPKQDGVDEKAYQEWYAQIYQILYKGWKGVFYHKASVSAL 134
N+N+ +K NKT Q G++ KA E +A+ Y + WK K S +
Sbjct: 2 NINE-REKERVALNKTAHSQ-----GIEGKAMSEEWARYYPRQFDSWKKT---KESDNIT 52
Query: 135 IMIAKDGEFDYTILSYSDFKDYN 157
M+ + Y KDYN
Sbjct: 53 DMLKEKPALVVAWAGYPFSKDYN 75
>pdb|1KIL|C Chain C, Three-Dimensional Structure Of The ComplexinSNARE
COMPLEX
Length = 74
Score = 25.0 bits (53), Expect = 5.8
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 16 EESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQEMLKGLQQN 75
+ESLE+ L +E DA + +EQ E+ R++E N NQ+M K ++N
Sbjct: 15 DESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGM----NHINQDM-KEAEKN 69
Query: 76 L 76
L
Sbjct: 70 L 70
>pdb|1L4A|C Chain C, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 83
Score = 24.6 bits (52), Expect = 7.6
Identities = 19/61 (31%), Positives = 33/61 (53%), Gaps = 5/61 (8%)
Query: 16 EESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQEMLKGLQQN 75
++SLE+ LN +E +A + +EQ E+ R++E +Q NQ+M K ++N
Sbjct: 23 DDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEE----GLDQINQDM-KDAEKN 77
Query: 76 L 76
L
Sbjct: 78 L 78
>pdb|1G5V|A Chain A, Solution Structure Of The Tudor Domain Of The Human Smn
Protein
Length = 88
Score = 24.3 bits (51), Expect = 9.9
Identities = 8/36 (22%), Positives = 22/36 (60%)
Query: 15 QEESLENIFSSLNDFQEKTDANAQKNEQKNEQEEEQ 50
+E++L ++ S + + + NAQ+NE +++ ++
Sbjct: 53 EEQNLSDLLSPICEVANNIEQNAQENENESQVSTDE 88
>pdb|1X11|A Chain A, X11 Ptb Domain
pdb|1AQC|A Chain A, X11 Ptb Domain-10mer Peptide Complex
pdb|1X11|B Chain B, X11 Ptb Domain
pdb|1AQC|B Chain B, X11 Ptb Domain-10mer Peptide Complex
Length = 172
Score = 24.3 bits (51), Expect = 9.9
Identities = 12/39 (30%), Positives = 20/39 (50%)
Query: 26 LNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQK 64
L Q +D KN + + +E R+K Q+L K++K
Sbjct: 15 LGSTQLLSDKTPSKNVRXXQAQEAVSRIKXAQKLAKSRK 53
>pdb|1LRZ|A Chain A, X-Ray Crystal Structure Of Staphylococcus Aureus Fema
Length = 426
Score = 24.3 bits (51), Expect = 9.9
Identities = 14/49 (28%), Positives = 27/49 (54%), Gaps = 1/49 (2%)
Query: 40 NEQKNEQEEE-QRRLKEQQRLRKNQKNQEMLKGLQQNLNQFAQKLESVK 87
NE+++ ++ + LK+ ++ +N+K LQQ L+ QK+E K
Sbjct: 253 NEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGK 301
>pdb|1IRJ|A Chain A, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|H Chain H, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|B Chain B, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|F Chain F, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|G Chain G, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|C Chain C, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|E Chain E, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|D Chain D, Crystal Structure Of The Mrp14 Complexed With Chaps
Length = 113
Score = 24.3 bits (51), Expect = 9.9
Identities = 14/62 (22%), Positives = 31/62 (49%)
Query: 21 NIFSSLNDFQEKTDANAQKNEQKNEQEEEQRRLKEQQRLRKNQKNQEMLKGLQQNLNQFA 80
NI + +N F + + + + +E R Q L+K KN+++++ + ++L+ A
Sbjct: 10 NIETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNA 69
Query: 81 QK 82
K
Sbjct: 70 DK 71
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.311 0.130 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,114,698
Number of Sequences: 13198
Number of extensions: 43504
Number of successful extensions: 120
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 95
Number of HSP's gapped (non-prelim): 37
length of query: 193
length of database: 2,899,336
effective HSP length: 83
effective length of query: 110
effective length of database: 1,803,902
effective search space: 198429220
effective search space used: 198429220
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)