BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645742|ref|NP_207919.1| hypothetical protein
[Helicobacter pylori 26695]
(84 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1BU7|A Chain A, Cryogenic Structure Of Cytochrome P450b... 27 0.51
pdb|1JPZ|B Chain B, Crystal Structure Of A Complex Of The H... 27 0.51
pdb|1JME|B Chain B, Crystal Structure Of Phe393his Cytochro... 27 0.51
pdb|2HPD|A Chain A, Cytochrome P450 (Bm-3) (E.C.1.14.14.1) ... 27 0.51
pdb|1FAH|A Chain A, Structure Of Cytochrome P450 >gi|194238... 27 0.51
pdb|1BVY|A Chain A, Complex Of The Heme And Fmn-Binding Dom... 27 0.51
pdb|1FRB| Fr-1 ProteinNADPHZOPOLRESTAT COMPLEX 26 0.87
pdb|1PII| N-(5'phosphoribosyl)anthranilate Isomerase (E.C... 25 1.1
pdb|1JSA| Myristoylated Recoverin With Two Calciums Bound... 25 1.9
pdb|1REC| Recoverin (Calcium Sensor In Vision) 25 1.9
pdb|1LA3|A Chain A, Solution Structure Of Recoverin Mutant,... 25 1.9
pdb|1F02|T Chain T, Crystal Structure Of C-Terminal 282-Res... 24 2.5
pdb|1JCM|P Chain P, Trpc Stability Mutant Containing An Eng... 24 3.3
pdb|1KGE| Structure Of Beta-Lactamase Asn 170 Met Mutant 24 3.3
pdb|1KGF| Structure Of Beta-Lactamase Asn 170 Gln Mutant 24 3.3
pdb|1GHP|A Chain A, Structures Of The Acyl-Enzyme Complex O... 24 3.3
pdb|1KGG|A Chain A, Structure Of Beta-Lactamase Glu166gln:a... 24 3.3
pdb|1OME|A Chain A, Crystal Structure Of The Omega Loop Del... 24 3.3
pdb|1BLP| Beta-Lactamase (E.C.3.5.2.6) P54 Mutant With As... 24 3.3
pdb|1DJC| Structure Of Beta-Lactamase Precursor, S70a Mut... 24 3.3
pdb|1PIO|A Chain A, Mol_id: 1; Molecule: Beta-Lactamase; Ch... 24 3.3
pdb|1DJA| Structure Of Beta-Lactamase Precursor, K73h Mut... 24 3.3
pdb|3BLM| Beta-Lactamase (E.C.3.5.2.6) >gi|493890|pdb|1BL... 24 3.3
pdb|1ALQ| Circularly Permuted Beta-Lactamase From Staphyl... 24 3.3
pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Confor... 23 5.6
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Acti... 23 5.6
pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And F... 23 5.6
pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:... 23 5.6
pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near ... 23 5.6
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor >gi|1697482... 23 7.4
pdb|1E0Y|A Chain A, Structure Of The D170sT457E DOUBLE MUTA... 23 7.4
pdb|1PXT|B Chain B, Peroxisomal 3-Ketoacyl-Coa Thiolase (E.... 23 7.4
pdb|1AFW|B Chain B, The 1.8 Angstrom Crystal Structure Of T... 23 7.4
pdb|1AHU|A Chain A, Structure Of The Octameric Flavoenzyme ... 23 7.4
pdb|1E8G|A Chain A, Structure Of The H61t Double Mutant Of ... 23 7.4
pdb|1DZN|B Chain B, Asp170ser Mutant Of Vanillyl-Alcohol Ox... 23 7.4
pdb|1QLT|A Chain A, Structure Of The H422a Mutant Of The Fl... 23 7.4
pdb|1JET|A Chain A, Oligo-Peptide Binding Protein (Oppa) Co... 22 9.6
pdb|1I6H|B Chain B, Rna Polymerase Ii Elongation Complex >g... 22 9.6
>pdb|1BU7|A Chain A, Cryogenic Structure Of Cytochrome P450bm-3 Heme Domain
pdb|1BU7|B Chain B, Cryogenic Structure Of Cytochrome P450bm-3 Heme Domain
pdb|2BMH|A Chain A, Cytochrome P450 (Bm-3) (E.C.1.14.14.1) (Hemoprotein
Domain)
pdb|2BMH|B Chain B, Cytochrome P450 (Bm-3) (E.C.1.14.14.1) (Hemoprotein
Domain)
Length = 455
Score = 26.6 bits (57), Expect = 0.51
Identities = 15/42 (35%), Positives = 25/42 (58%)
Query: 10 SGFLAFLLYALLLYGLLLERHNKEAEKILLDLGKKNEQVIDL 51
SG L+F LY L+ +L++ +EA ++L+D +QV L
Sbjct: 270 SGLLSFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQL 311
>pdb|1JPZ|B Chain B, Crystal Structure Of A Complex Of The Heme Domain Of
P450bm- 3 With N-Palmitoylglycine
pdb|1JPZ|A Chain A, Crystal Structure Of A Complex Of The Heme Domain Of
P450bm- 3 With N-Palmitoylglycine
Length = 473
Score = 26.6 bits (57), Expect = 0.51
Identities = 15/42 (35%), Positives = 25/42 (58%)
Query: 10 SGFLAFLLYALLLYGLLLERHNKEAEKILLDLGKKNEQVIDL 51
SG L+F LY L+ +L++ +EA ++L+D +QV L
Sbjct: 273 SGLLSFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQL 314
>pdb|1JME|B Chain B, Crystal Structure Of Phe393his Cytochrome P450 Bm3
pdb|1JME|A Chain A, Crystal Structure Of Phe393his Cytochrome P450 Bm3
Length = 455
Score = 26.6 bits (57), Expect = 0.51
Identities = 15/42 (35%), Positives = 25/42 (58%)
Query: 10 SGFLAFLLYALLLYGLLLERHNKEAEKILLDLGKKNEQVIDL 51
SG L+F LY L+ +L++ +EA ++L+D +QV L
Sbjct: 270 SGLLSFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQL 311
>pdb|2HPD|A Chain A, Cytochrome P450 (Bm-3) (E.C.1.14.14.1) (Hemoprotein
Domain) (Fatty Acid Monooxygenase)
pdb|2HPD|B Chain B, Cytochrome P450 (Bm-3) (E.C.1.14.14.1) (Hemoprotein
Domain) (Fatty Acid Monooxygenase)
pdb|1FAG|A Chain A, Structure Of Cytochrome P450
pdb|1FAG|B Chain B, Structure Of Cytochrome P450
pdb|1FAG|C Chain C, Structure Of Cytochrome P450
pdb|1FAG|D Chain D, Structure Of Cytochrome P450
Length = 471
Score = 26.6 bits (57), Expect = 0.51
Identities = 15/42 (35%), Positives = 25/42 (58%)
Query: 10 SGFLAFLLYALLLYGLLLERHNKEAEKILLDLGKKNEQVIDL 51
SG L+F LY L+ +L++ +EA ++L+D +QV L
Sbjct: 270 SGLLSFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQL 311
>pdb|1FAH|A Chain A, Structure Of Cytochrome P450
pdb|1FAH|B Chain B, Structure Of Cytochrome P450
Length = 471
Score = 26.6 bits (57), Expect = 0.51
Identities = 15/42 (35%), Positives = 25/42 (58%)
Query: 10 SGFLAFLLYALLLYGLLLERHNKEAEKILLDLGKKNEQVIDL 51
SG L+F LY L+ +L++ +EA ++L+D +QV L
Sbjct: 270 SGLLSFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQL 311
>pdb|1BVY|A Chain A, Complex Of The Heme And Fmn-Binding Domains Of The
Cytochrome P450(Bm-3)
pdb|1BVY|B Chain B, Complex Of The Heme And Fmn-Binding Domains Of The
Cytochrome P450(Bm-3)
Length = 458
Score = 26.6 bits (57), Expect = 0.51
Identities = 15/42 (35%), Positives = 25/42 (58%)
Query: 10 SGFLAFLLYALLLYGLLLERHNKEAEKILLDLGKKNEQVIDL 51
SG L+F LY L+ +L++ +EA ++L+D +QV L
Sbjct: 270 SGLLSFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQL 311
>pdb|1FRB| Fr-1 ProteinNADPHZOPOLRESTAT COMPLEX
Length = 315
Score = 25.8 bits (55), Expect = 0.87
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 32 KEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAEKAEEKKDEKVVEK 81
KEA K +D G ++ + E EKI EKA +++D +V K
Sbjct: 28 KEAVKAAIDAGYRHIDCAYAYCNENEVGEAIQEKIKEKAVQREDLFIVSK 77
>pdb|1PII| N-(5'phosphoribosyl)anthranilate Isomerase (E.C.5.3.1.24) Complex
With Indole-3-Glycerol-Phosphate Synthase (E.C.4.1.1.48)
Length = 452
Score = 25.4 bits (54), Expect = 1.1
Identities = 14/46 (30%), Positives = 25/46 (53%)
Query: 24 GLLLERHNKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAEK 69
G+L E N+E ++ + LG K + + +L DL D + ++A K
Sbjct: 159 GVLTEVSNEEEQERAIALGAKVVGINNRDLRDLSIDLNRTRELAPK 204
>pdb|1JSA| Myristoylated Recoverin With Two Calciums Bound, Nmr, 24
Structures
pdb|1IKU| Myristoylated Recoverin In The Calcium-Free State, Nmr, 22
Structures
Length = 202
Score = 24.6 bits (52), Expect = 1.9
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 56 LPSDEKKDEKIAEKA----EEKKDEKVVEK 81
LP DE EK AEK +K D+K+ EK
Sbjct: 141 LPEDENTPEKRAEKIWGFFGKKDDDKLTEK 170
>pdb|1REC| Recoverin (Calcium Sensor In Vision)
Length = 201
Score = 24.6 bits (52), Expect = 1.9
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 56 LPSDEKKDEKIAEKA----EEKKDEKVVEK 81
LP DE EK AEK +K D+K+ EK
Sbjct: 140 LPEDENTPEKRAEKIWGFFGKKDDDKLTEK 169
>pdb|1LA3|A Chain A, Solution Structure Of Recoverin Mutant, E85q
Length = 202
Score = 24.6 bits (52), Expect = 1.9
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 56 LPSDEKKDEKIAEKA----EEKKDEKVVEK 81
LP DE EK AEK +K D+K+ EK
Sbjct: 141 LPEDENTPEKRAEKIWGFFGKKDDDKLTEK 170
>pdb|1F02|T Chain T, Crystal Structure Of C-Terminal 282-Residue Fragment Of
Intimin In Complex With Translocated Intimin Receptor
(Tir) Intimin-Binding Domain
Length = 66
Score = 24.3 bits (51), Expect = 2.5
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 44 KNEQV-IDLNLEDLPSDEKKDEKIAEKAEEKKD 75
+N++V ID N +PS E KD+ + + A++ K+
Sbjct: 25 ENQKVNIDANGNAIPSGELKDDIVEQIAQQAKE 57
>pdb|1JCM|P Chain P, Trpc Stability Mutant Containing An Engineered Disulphide
Bridge And In Complex With A Cdrp-Related Substrate
Length = 259
Score = 23.9 bits (50), Expect = 3.3
Identities = 14/46 (30%), Positives = 25/46 (53%)
Query: 24 GLLLERHNKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAEK 69
G+L E N+E ++ + LG K + + +L DL D + ++A K
Sbjct: 159 GVLTEVSNEEEQERAIALGAKVVGINNRDLCDLSIDLNRTRELAPK 204
>pdb|1KGE| Structure Of Beta-Lactamase Asn 170 Met Mutant
Length = 258
Score = 23.9 bits (50), Expect = 3.3
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 31 NKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAEKA 70
+KE +K LLDL N+ L + +P KD K+A+K+
Sbjct: 168 SKENKKFLLDLMLNNKSGDTLIKDGVP----KDYKVADKS 203
>pdb|1KGF| Structure Of Beta-Lactamase Asn 170 Gln Mutant
Length = 258
Score = 23.9 bits (50), Expect = 3.3
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 31 NKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAEKA 70
+KE +K LLDL N+ L + +P KD K+A+K+
Sbjct: 168 SKENKKFLLDLMLNNKSGDTLIKDGVP----KDYKVADKS 203
>pdb|1GHP|A Chain A, Structures Of The Acyl-Enzyme Complex Of The
Staphylococcus Aureus Beta-Lactamase Mutant
Glu166asp:asn170gln With Degraded Benzylpenicillin
pdb|1GHM|A Chain A, Structures Of The Acyl-Enzyme Complex Of The
Staphylococcus Aureus Beta-Lactamase Mutant
Glu166asp:asn170gln With Degraded Cephaloridine
pdb|1GHI|A Chain A, Structure Of Beta-Lactamase Glu166asp:asn170gln Mutant
Length = 258
Score = 23.9 bits (50), Expect = 3.3
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 31 NKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAEKA 70
+KE +K LLDL N+ L + +P KD K+A+K+
Sbjct: 168 SKENKKFLLDLMLNNKSGDTLIKDGVP----KDYKVADKS 203
>pdb|1KGG|A Chain A, Structure Of Beta-Lactamase Glu166gln:asn170asp Mutant
Length = 258
Score = 23.9 bits (50), Expect = 3.3
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 31 NKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAEKA 70
+KE +K LLDL N+ L + +P KD K+A+K+
Sbjct: 168 SKENKKFLLDLMLNNKSGDTLIKDGVP----KDYKVADKS 203
>pdb|1OME|A Chain A, Crystal Structure Of The Omega Loop Deletion Mutant
(Residues 163 - 178 Deleted) Of Beta-Lactamase From
Staphylococcus Aureus Pc1
pdb|1OME|B Chain B, Crystal Structure Of The Omega Loop Deletion Mutant
(Residues 163 - 178 Deleted) Of Beta-Lactamase From
Staphylococcus Aureus Pc1
Length = 242
Score = 23.9 bits (50), Expect = 3.3
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 31 NKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAEKA 70
+KE +K LLDL N+ L + +P KD K+A+K+
Sbjct: 152 SKENKKFLLDLMLNNKSGDTLIKDGVP----KDYKVADKS 187
>pdb|1BLP| Beta-Lactamase (E.C.3.5.2.6) P54 Mutant With Asp 179 Replaced By
Asn (D179n)
Length = 257
Score = 23.9 bits (50), Expect = 3.3
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 31 NKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAEKA 70
+KE +K LLDL N+ L + +P KD K+A+K+
Sbjct: 167 SKENKKFLLDLMLNNKSGDTLIKDGVP----KDYKVADKS 202
>pdb|1DJC| Structure Of Beta-Lactamase Precursor, S70a Mutant, At 120k
pdb|1DJB| Structure Of Beta-Lactamase Precursor, S70a Mutant, At 298k
Length = 257
Score = 23.9 bits (50), Expect = 3.3
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 31 NKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAEKA 70
+KE +K LLDL N+ L + +P KD K+A+K+
Sbjct: 167 SKENKKFLLDLMLNNKSGDTLIKDGVP----KDYKVADKS 202
>pdb|1PIO|A Chain A, Mol_id: 1; Molecule: Beta-Lactamase; Chain: A, B; Synonym:
Penicillinase; Ec: 3.5.2.6; Engineered: Yes; Mutation:
Ins(Met 30), A238s, Del(I239)
pdb|1PIO|B Chain B, Mol_id: 1; Molecule: Beta-Lactamase; Chain: A, B; Synonym:
Penicillinase; Ec: 3.5.2.6; Engineered: Yes; Mutation:
Ins(Met 30), A238s, Del(I239)
Length = 257
Score = 23.9 bits (50), Expect = 3.3
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 31 NKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAEKA 70
+KE +K LLDL N+ L + +P KD K+A+K+
Sbjct: 168 SKENKKFLLDLMLNNKSGDTLIKDGVP----KDYKVADKS 203
>pdb|1DJA| Structure Of Beta-Lactamase Precursor, K73h Mutant, At 298k
Length = 258
Score = 23.9 bits (50), Expect = 3.3
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 31 NKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAEKA 70
+KE +K LLDL N+ L + +P KD K+A+K+
Sbjct: 168 SKENKKFLLDLMLNNKSGDTLIKDGVP----KDYKVADKS 203
>pdb|3BLM| Beta-Lactamase (E.C.3.5.2.6)
pdb|1BLC| Beta-Lactamase (E.C.3.5.2.6) Complex With Degradation Products Of
Clavulanate
pdb|1BLH| Beta-Lactamase (E.C.3.5.2.6) Complexed With
[[n-(Benzyloxycarbonyl)amino]methyl]phosphonate
Length = 257
Score = 23.9 bits (50), Expect = 3.3
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 31 NKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAEKA 70
+KE +K LLDL N+ L + +P KD K+A+K+
Sbjct: 167 SKENKKFLLDLMLNNKSGDTLIKDGVP----KDYKVADKS 202
>pdb|1ALQ| Circularly Permuted Beta-Lactamase From Staphylococcus Aureus Pc1
Length = 266
Score = 23.9 bits (50), Expect = 3.3
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 31 NKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAEKA 70
+KE +K LLDL N+ L + +P KD K+A+K+
Sbjct: 213 SKENKKFLLDLMLNNKSGDTLIKDGVP----KDYKVADKS 248
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 23.1 bits (48), Expect = 5.6
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 60 EKKDEKIAEKAEEKKDEKVVEKN 82
+KKDE+ ++K E ++++++ N
Sbjct: 201 KKKDEEASDKKEGSLEDQIIQAN 223
>pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1B7T|A Chain A, Myosin Digested By Papain
Length = 835
Score = 23.1 bits (48), Expect = 5.6
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 60 EKKDEKIAEKAEEKKDEKVVEKN 82
+KKDE+ ++K E ++++++ N
Sbjct: 201 KKKDEEASDKKEGSLEDQIIQAN 223
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of
Moesin
Length = 346
Score = 23.1 bits (48), Expect = 5.6
Identities = 14/53 (26%), Positives = 25/53 (46%), Gaps = 18/53 (33%)
Query: 28 ERHNKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAEKAEEKKDEKVVE 80
E+H K+ E+ +L+ +EKK ++AEK +EK + + E
Sbjct: 312 EKHQKQMERAMLE------------------NEKKKREMAEKEKEKIEREKEE 346
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
Length = 831
Score = 23.1 bits (48), Expect = 5.6
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 60 EKKDEKIAEKAEEKKDEKVVEKN 82
+KKDE+ ++K E ++++++ N
Sbjct: 197 KKKDEEASDKKEGSLEDQIIQAN 219
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 23.1 bits (48), Expect = 5.6
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 60 EKKDEKIAEKAEEKKDEKVVEKN 82
+KKDE+ ++K E ++++++ N
Sbjct: 196 KKKDEEASDKKEGSLEDQIIQAN 218
>pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
Length = 776
Score = 22.7 bits (47), Expect = 7.4
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 5/32 (15%)
Query: 41 LGKKNEQVIDLNLEDLPSDEKKDEKIAEKAEE 72
+ K NEQ I+L+LE+L KD+++ + E+
Sbjct: 244 MDKFNEQEINLSLEEL-----KDQRMLSRYEK 270
>pdb|1E0Y|A Chain A, Structure Of The D170sT457E DOUBLE MUTANT OF
Vanillyl-Alcohol Oxidase
pdb|1E0Y|B Chain B, Structure Of The D170sT457E DOUBLE MUTANT OF
Vanillyl-Alcohol Oxidase
Length = 560
Score = 22.7 bits (47), Expect = 7.4
Identities = 7/18 (38%), Positives = 15/18 (82%)
Query: 37 ILLDLGKKNEQVIDLNLE 54
++LD+GK +V+++N+E
Sbjct: 119 VVLDMGKNMNRVLEVNVE 136
>pdb|1PXT|B Chain B, Peroxisomal 3-Ketoacyl-Coa Thiolase (E.C.2.3.1.16)
pdb|1PXT|A Chain A, Peroxisomal 3-Ketoacyl-Coa Thiolase (E.C.2.3.1.16)
Length = 390
Score = 22.7 bits (47), Expect = 7.4
Identities = 19/53 (35%), Positives = 29/53 (53%), Gaps = 6/53 (11%)
Query: 31 NKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIA---EKAEEKKDEKVVE 80
N+EA+K L+ +G NE V N + D+ DE A +KA + K+E + E
Sbjct: 149 NREAKKCLIPMGITNENVA-ANFKISRKDQ--DEFAANSYQKAYKAKNEGLFE 198
>pdb|1AFW|B Chain B, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
pdb|1AFW|A Chain A, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
Length = 393
Score = 22.7 bits (47), Expect = 7.4
Identities = 19/53 (35%), Positives = 29/53 (53%), Gaps = 6/53 (11%)
Query: 31 NKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIA---EKAEEKKDEKVVE 80
N+EA+K L+ +G NE V N + D+ DE A +KA + K+E + E
Sbjct: 152 NREAKKCLIPMGITNENVA-ANFKISRKDQ--DEFAANSYQKAYKAKNEGLFE 201
>pdb|1AHU|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|1AHU|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|2VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|2VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|1AHV|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHV|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHZ|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
pdb|1AHZ|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
pdb|1VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase
pdb|1VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase
Length = 560
Score = 22.7 bits (47), Expect = 7.4
Identities = 7/18 (38%), Positives = 15/18 (82%)
Query: 37 ILLDLGKKNEQVIDLNLE 54
++LD+GK +V+++N+E
Sbjct: 119 VVLDMGKNMNRVLEVNVE 136
>pdb|1E8G|A Chain A, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8G|B Chain B, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8H|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form Complexed By
Adp
pdb|1E8H|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form Complexed By
Adp
pdb|1E8F|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
pdb|1E8F|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
Length = 560
Score = 22.7 bits (47), Expect = 7.4
Identities = 7/18 (38%), Positives = 15/18 (82%)
Query: 37 ILLDLGKKNEQVIDLNLE 54
++LD+GK +V+++N+E
Sbjct: 119 VVLDMGKNMNRVLEVNVE 136
>pdb|1DZN|B Chain B, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
pdb|1DZN|A Chain A, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
Length = 560
Score = 22.7 bits (47), Expect = 7.4
Identities = 7/18 (38%), Positives = 15/18 (82%)
Query: 37 ILLDLGKKNEQVIDLNLE 54
++LD+GK +V+++N+E
Sbjct: 119 VVLDMGKNMNRVLEVNVE 136
>pdb|1QLT|A Chain A, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLT|B Chain B, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLU|A Chain A, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
pdb|1QLU|B Chain B, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
Length = 560
Score = 22.7 bits (47), Expect = 7.4
Identities = 7/18 (38%), Positives = 15/18 (82%)
Query: 37 ILLDLGKKNEQVIDLNLE 54
++LD+GK +V+++N+E
Sbjct: 119 VVLDMGKNMNRVLEVNVE 136
>pdb|1JET|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kak
pdb|1JEU|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kek
pdb|1JEV|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kwk
pdb|2OLB|A Chain A, Oligopeptide Binding Protein (Oppa) Complexed With
Tri-Lysine
pdb|1B32|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kmk
pdb|1B4Z|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kdk
pdb|1QKB|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kvk
pdb|1B46|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kpk
pdb|1QKA|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Krk
pdb|1B51|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Ksk
pdb|1B1H|A Chain A, Oligo-Peptide Binding ProteinTRIPEPTIDE (LYS HPE LYS)
Complex
pdb|1B3F|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Khk
pdb|1B58|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kyk
pdb|1B5J|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kqk
pdb|1B6H|A Chain A, Oligo-Peptide Binding Protein Complexed With
Lysyl-Norvalyl- Lysine
pdb|1B9J|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Klk
pdb|2RKM|A Chain A, Structure Of Oppa Complexed With Lys-Lys
pdb|1B2H|A Chain A, Oligo-Peptide Binding Protein Complexed With
Lysyl-Ornithyl- Lysine
pdb|1B0H|A Chain A, Oligo-Peptide Binding Protein Complexed With Lysyl-
Napthylalanyl-Lysine
pdb|1B4H|A Chain A, Oligo-Peptide Binding Protein Complexed With Lysyl-
Diaminobutyric Acid-Lysine
pdb|1B5H|A Chain A, Oligo-Peptide Binding Protein Complexed With Lysyl-
Diaminopropanoic Acid-Lysine
pdb|1B5I|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Knk
pdb|1B3L|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kgk
pdb|1B3L|C Chain C, Oligo-Peptide Binding Protein (Oppa) Complexed With Kgk
pdb|1B3G|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kik
pdb|1B3H|A Chain A, Oligo-Peptide Binding Protein Complexed With Lysyl-
Cyclohexylalanyl-Lysine
pdb|1B7H|A Chain A, Oligo-Peptide Binding Protein Complexed With Lysyl-
Norleucyl-Lysine
pdb|1OLC|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With
Lys-Lys-Lys-Ala
pdb|1B40|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kfk
pdb|1RKM| Structure Of Oppa
pdb|1B05|A Chain A, Structure Of Oligo-Peptide Binding Protein Complexed With
Lys-Cys-Lys
pdb|1B52|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Ktk
pdb|1OLA|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With A
Four-Residue Peptide
Length = 517
Score = 22.3 bits (46), Expect = 9.6
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 28 ERHNKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAEKAEEKKD 75
++ N+EA+K+L + G ++ + +L SD K IA + KK+
Sbjct: 338 QKRNEEAKKLLAEAGFTADKPLTFDLLYNTSDLHKKLAIAVASIWKKN 385
>pdb|1I6H|B Chain B, Rna Polymerase Ii Elongation Complex
pdb|1I50|B Chain B, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
pdb|1I3Q|B Chain B, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
pdb|1K83|B Chain B, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
Length = 1224
Score = 22.3 bits (46), Expect = 9.6
Identities = 12/39 (30%), Positives = 22/39 (55%), Gaps = 5/39 (12%)
Query: 37 ILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAEKAEEKKD 75
+ +D+ K+ + ID+ P E K E IAE++E+ +
Sbjct: 128 LFVDVKKRTYEAIDV-----PGRELKYELIAEESEDDSE 161
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.311 0.134 0.341
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 413,350
Number of Sequences: 13198
Number of extensions: 15013
Number of successful extensions: 58
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 39
length of query: 84
length of database: 2,899,336
effective HSP length: 60
effective length of query: 24
effective length of database: 2,107,456
effective search space: 50578944
effective search space used: 50578944
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 46 (22.3 bits)