BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645744|ref|NP_207921.1| biopolymer transport
protein (exbB) [Helicobacter pylori 26695]
         (189 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1EHK|A  Chain A, Crystal Structure Of The Aberrant Ba3-C...    24  9.6

>pdb|1EHK|A Chain A, Crystal Structure Of The Aberrant Ba3-Cytochrome-C Oxidase
           From Thermus Thermophilus
          Length = 562

 Score = 24.3 bits (51), Expect = 9.6
 Identities = 9/26 (34%), Positives = 16/26 (60%), Gaps = 3/26 (11%)

Query: 7   YFFNKSGFVTTLVLVWISLYLVMTLW 32
           ++   S FV +    W+S+Y+V+ LW
Sbjct: 145 FYLGASVFVLS---TWVSIYIVLDLW 167



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.324    0.137    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 908,808
Number of Sequences: 13198
Number of extensions: 30264
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 94
Number of HSP's gapped (non-prelim): 1
length of query: 189
length of database: 2,899,336
effective HSP length: 83
effective length of query: 106
effective length of database: 1,803,902
effective search space: 191213612
effective search space used: 191213612
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)