BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645745|ref|NP_207922.1| ATP synthase F1, subunit
epsilon (atpC) [Helicobacter pylori 26695]
(124 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1AQT| Epsilon Subunit Of F1f0-Atp Synthase From Esche... 53 1e-08
pdb|1BSH|A Chain A, Solution Structure Of The Epsilon Subun... 53 1e-08
pdb|1E79|H Chain H, Bovine F1-Atpase Inhibited By Dccd (Dic... 32 0.028
pdb|1HD2|A Chain A, Human Peroxiredoxin 5 >gi|16975155|pdb|... 25 2.0
pdb|1B35|A Chain A, Cricket Paralysis Virus (Crpv) 25 2.6
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 25 3.4
pdb|1CVL| Crystal Structure Of Bacterial Lipase From Chro... 24 4.4
pdb|1QGE|E Chain E, New Crystal Form Of Pseudomonas Glumae ... 24 4.4
pdb|1TAH|A Chain A, Lipase (E.C.3.1.1.3) (Triacylglycerol H... 24 4.4
pdb|1EG0|J Chain J, Fitting Of Components With Known Struct... 24 5.8
pdb|1RL6|A Chain A, Ribosomal Protein L6 >gi|6137592|pdb|1C... 24 5.8
pdb|1K9E|A Chain A, Crystal Structure Of A Mutated Family-6... 23 7.5
pdb|1GQI|A Chain A, Structure Of Pseudomonas Cellulosa Alph... 23 7.5
pdb|1K9D|A Chain A, The 1.7 A Crystal Structure Of Alpha-D-... 23 7.5
pdb|1HQS|A Chain A, Crystal Structure Of Isocitrate Dehydro... 23 9.9
pdb|1K2Y|X Chain X, Crystal Structure Of Phosphomannomutase... 23 9.9
pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught ... 23 9.9
pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small S... 23 9.9
pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthe... 23 9.9
pdb|1K35|A Chain A, Crystal Structure Of Phosphomannomutase... 23 9.9
>pdb|1AQT| Epsilon Subunit Of F1f0-Atp Synthase From Escherichia Coli
pdb|1QO1|J Chain J, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
Length = 138
Score = 52.8 bits (125), Expect = 1e-08
Identities = 38/120 (31%), Positives = 63/120 (51%), Gaps = 8/120 (6%)
Query: 7 ISVVVPEGEVYTGEVKSVVLPGVEGEFGVLYGHSNMITLLQAGVIEI-ETENQKEHIAIN 65
+ VV E ++++G V+ + + G EGE G+ GH+ ++T ++ G+I I + +E I ++
Sbjct: 6 LDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLS 65
Query: 66 WGYAEVTNERVDILADGAVFIKKESDDRDDAISRAKKLLEDASS-----DRLAVSSVLAK 120
G EV V +LAD A I+ + D A+ +K E SS D S+ LAK
Sbjct: 66 GGILEVQPGNVTVLADTA--IRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAK 123
>pdb|1BSH|A Chain A, Solution Structure Of The Epsilon Subunit Of The F1-
Atpsynthase From Escherichia Coli And Orientation Of The
Subunit Relative To The Beta Subunits Of The Complex
pdb|1BSN|A Chain A, Solution Structure Of The Epsilon Subunit Of The F1-
Atpsynthase From Escherichia Coli And Orientation Of The
Subunit Relative To The Beta Subunits Of The Complex
pdb|1FS0|E Chain E, Complex Of GammaEPSILON ATP SYNTHASE FROM E.COLI
Length = 138
Score = 52.8 bits (125), Expect = 1e-08
Identities = 38/120 (31%), Positives = 63/120 (51%), Gaps = 8/120 (6%)
Query: 7 ISVVVPEGEVYTGEVKSVVLPGVEGEFGVLYGHSNMITLLQAGVIEI-ETENQKEHIAIN 65
+ VV E ++++G V+ + + G EGE G+ GH+ ++T ++ G+I I + +E I ++
Sbjct: 6 LDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLS 65
Query: 66 WGYAEVTNERVDILADGAVFIKKESDDRDDAISRAKKLLEDASS-----DRLAVSSVLAK 120
G EV V +LAD A I+ + D A+ +K E SS D S+ LAK
Sbjct: 66 GGILEVQPGNVTVLADTA--IRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAK 123
>pdb|1E79|H Chain H, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8E|H Chain H, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
Length = 146
Score = 31.6 bits (70), Expect = 0.028
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 18 TGEVKSVVLPGVEGEFGVLYGHSNMITLLQAGVIEIETEN--QKEHIAINWGYAEVTNER 75
+ V+ V +P G FG+L H + +L+ G++ + E+ ++ + +
Sbjct: 30 SANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNADSS 89
Query: 76 VDILADGAVFIKKESDDRDDAISRAKKLLEDASSDRLAVSSVLAKIE 122
V +LA+ AV + D D + AK LE A S+ L + + E
Sbjct: 90 VQLLAEEAVTL----DMLD--LGAAKANLEKAQSELLGAADEATRAE 130
>pdb|1HD2|A Chain A, Human Peroxiredoxin 5
pdb|1H4O|A Chain A, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|B Chain B, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|C Chain C, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|D Chain D, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|E Chain E, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|F Chain F, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|G Chain G, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|H Chain H, Monoclinic Form Of Human Peroxiredoxin 5
Length = 161
Score = 25.4 bits (54), Expect = 2.0
Identities = 27/109 (24%), Positives = 45/109 (40%), Gaps = 20/109 (18%)
Query: 3 ALLKISVVVPEGEVYTGEVKSVVLPG--VEGEFGVLYGHSNMIT-----------LLQAG 49
A +K+ +P EV+ GE + V +G+ GVL+G T + QA
Sbjct: 1 APIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAE 60
Query: 50 VIEIETENQKEHIAIN-------WGYAEVTNERVDILADGAVFIKKESD 91
++ + +++N WG A +V +LAD KE+D
Sbjct: 61 ALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETD 109
>pdb|1B35|A Chain A, Cricket Paralysis Virus (Crpv)
Length = 260
Score = 25.0 bits (53), Expect = 2.6
Identities = 14/55 (25%), Positives = 27/55 (48%)
Query: 8 SVVVPEGEVYTGEVKSVVLPGVEGEFGVLYGHSNMITLLQAGVIEIETENQKEHI 62
+ V+P G + G V+ P VEG V + N+ + A I+ T + ++++
Sbjct: 153 TTVLPSGTINMGPSTQVIDPTVEGLIEVEVPYYNISHITPAVTIDDGTPSMEDYL 207
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 24.6 bits (52), Expect = 3.4
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 29 VEGEFGVLYGHSNMIT----LLQAGVIEIETENQKEHIAINWGYAEVTNERVDILADGAV 84
+E + ++ +N +T LL+ V ++ T +E ++ N+ ++++ V
Sbjct: 988 MEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK-NLTKLKNKHESMISELEV 1046
Query: 85 FIKKESDDRDDAISRAKKLLEDASSD 110
+KKE R + + + K+ LE SSD
Sbjct: 1047 RLKKEEKSRQE-LEKIKRKLEGESSD 1071
>pdb|1CVL| Crystal Structure Of Bacterial Lipase From Chromobacterium
Viscosum Atcc 6918
Length = 319
Score = 24.3 bits (51), Expect = 4.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 78 ILADGAVFIKKESDDRDDAISRAKKL 103
+LA GAV I + S D +SR L
Sbjct: 247 LLATGAVMINRASGQNDGLVSRCSSL 272
>pdb|1QGE|E Chain E, New Crystal Form Of Pseudomonas Glumae (Formerly
Chromobacterium Viscosum Atcc 6918) Lipase
Length = 97
Score = 24.3 bits (51), Expect = 4.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 78 ILADGAVFIKKESDDRDDAISRAKKL 103
+LA GAV I + S D +SR L
Sbjct: 25 LLATGAVMINRASGQNDGLVSRCSSL 50
>pdb|1TAH|A Chain A, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1TAH|B Chain B, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1TAH|C Chain C, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1TAH|D Chain D, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
Length = 318
Score = 24.3 bits (51), Expect = 4.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 78 ILADGAVFIKKESDDRDDAISRAKKL 103
+LA GAV I + S D +SR L
Sbjct: 246 LLATGAVMINRASGQNDGLVSRCSSL 271
>pdb|1EG0|J Chain J, Fitting Of Components With Known Structure Into An 11.5
A Cryo-Em Map Of The E.Coli 70s Ribosome
Length = 171
Score = 23.9 bits (50), Expect = 5.8
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 6 KISVVVPEGEVYTGEVKSVVLPGVEGEFGVLYGHSNMITLLQAGVIEIETENQKEH 61
K + +P G T +V + G +GE + H +M ++ VI + + ++H
Sbjct: 6 KKPIEIPAGVTVTVNGNTVTVKGPKGELTRTF-HPDMTITVEGNVITVTRPSDEKH 60
>pdb|1RL6|A Chain A, Ribosomal Protein L6
pdb|1C04|B Chain B, Identification Of Known Protein And Rna Structures In A
5 A Map Of The Large Ribosomal Subunit From Haloarcula
Marismortui
pdb|1GIY|H Chain H, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1giy, Contains The 50s Ribosome Subunit. The
30s Ribosome Subunit, Three Trna, And Mrna Molecules
Are In The File 1gix
Length = 177
Score = 23.9 bits (50), Expect = 5.8
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 6 KISVVVPEGEVYTGEVKSVVLPGVEGEFGVLYGHSNMITLLQAGVIEIETENQKEH 61
K + +P G T +V + G +GE + H +M ++ VI + + ++H
Sbjct: 5 KKPIEIPAGVTVTVNGNTVTVKGPKGELTRTF-HPDMTITVEGNVITVTRPSDEKH 59
>pdb|1K9E|A Chain A, Crystal Structure Of A Mutated Family-67 Alpha-D-
Glucuronidase (E285n) From Bacillus Stearothermophilus
T-6, Complexed With 4-O-Methyl-Glucuronic Acid
pdb|1K9F|A Chain A, Crystal Structure Of A Mutated Family-67 Alpha-D-
Glucuronidase (E285n) From Bacillus Stearothermophilus
T-6, Complexed With Aldotetraouronic Acid
Length = 679
Score = 23.5 bits (49), Expect = 7.5
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 5 LKISVVVPEGEVYTGEVKS----VVLPGVEGEFGVLYGHSNMITLLQAG-----VIEIET 55
L+ ++V PEG V +V + + G + + GVLYG + + LLQ G + IE
Sbjct: 81 LEGTLVHPEGYVIRSDVDDGPFRIYIIG-KTDAGVLYGVFHFLRLLQMGENIAQLSIIEQ 139
Query: 56 ENQKEHIAINWGYAEVTNERVDILADGAVFIKKESDDRDDAISRAKKLLEDASSDRLAVS 115
+ + +W + + ER F+ + ++ I +LL + ++++
Sbjct: 140 PKNRLRMINHWDNMDGSIER-GYAGRSIFFVDDQFVKQNQRIKDYARLLASVGINAISIN 198
Query: 116 SV 117
+V
Sbjct: 199 NV 200
>pdb|1GQI|A Chain A, Structure Of Pseudomonas Cellulosa Alpha-D-Glucuronidase
pdb|1GQI|B Chain B, Structure Of Pseudomonas Cellulosa Alpha-D-Glucuronidase
pdb|1GQJ|A Chain A, Structure Of Pseudomonas Cellulosa Alpha-D-Glucuronidase
Complexed With Xylobiose
pdb|1GQJ|B Chain B, Structure Of Pseudomonas Cellulosa Alpha-D-Glucuronidase
Complexed With Xylobiose
pdb|1GQK|A Chain A, Structure Of Pseudomonas Cellulosa Alpha-D-Glucuronidase
Complexed With Glucuronic Acid
pdb|1GQK|B Chain B, Structure Of Pseudomonas Cellulosa Alpha-D-Glucuronidase
Complexed With Glucuronic Acid
pdb|1GQL|A Chain A, Structure Of Pseudomonas Cellulosa Alpha-D-Glucuronidase
Complexed With Glucuronic Acid And Xylotriose
pdb|1GQL|B Chain B, Structure Of Pseudomonas Cellulosa Alpha-D-Glucuronidase
Complexed With Glucuronic Acid And Xylotriose
Length = 708
Score = 23.5 bits (49), Expect = 7.5
Identities = 9/26 (34%), Positives = 16/26 (60%)
Query: 22 KSVVLPGVEGEFGVLYGHSNMITLLQ 47
+ VV+ + GVLYG +++ L+Q
Sbjct: 107 RHVVIVAANSDVGVLYGSFHLLRLIQ 132
>pdb|1K9D|A Chain A, The 1.7 A Crystal Structure Of Alpha-D-Glucuronidase, A
Family-67 Glycoside Hydrolase From Bacillus
Stearothermophilus T-1
Length = 679
Score = 23.5 bits (49), Expect = 7.5
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 5 LKISVVVPEGEVYTGEVKS----VVLPGVEGEFGVLYGHSNMITLLQAG-----VIEIET 55
L+ ++V PEG V +V + + G + + GVLYG + + LLQ G + IE
Sbjct: 81 LEGTLVHPEGYVIRSDVDDGPFRIYIIG-KTDAGVLYGVFHFLRLLQMGENIAQLSIIEQ 139
Query: 56 ENQKEHIAINWGYAEVTNERVDILADGAVFIKKESDDRDDAISRAKKLLEDASSDRLAVS 115
+ + +W + + ER F+ + ++ I +LL + ++++
Sbjct: 140 PKNRLRMINHWDNMDGSIER-GYAGRSIFFVDDQFVKQNQRIKDYARLLASVGINAISIN 198
Query: 116 SV 117
+V
Sbjct: 199 NV 200
>pdb|1HQS|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
pdb|1HQS|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
Length = 423
Score = 23.1 bits (48), Expect = 9.9
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 32 EFGVLYGHSNMITLLQAGVIEIETENQKEHIAINWGYAEVTNERVDILADGAVFIKKESD 91
++ + +G + +TL+ G I TE + NWGY E D + A + + +
Sbjct: 206 DYAIEHGRKS-VTLVHKGNIMKFTEGAFK----NWGYELAEKEYGDKVFTWAQYDRIAEE 260
Query: 92 DRDDAISRAKKLLEDA 107
DA ++A+ E A
Sbjct: 261 QGKDAANKAQSEAEAA 276
>pdb|1K2Y|X Chain X, Crystal Structure Of PhosphomannomutasePHOSPHOGLUCOMUTASE
S108a Mutant From P. Aeruginosa
Length = 463
Score = 23.1 bits (48), Expect = 9.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 82 GAVFIKKESDDRDDAISRAKKLLEDASSDR 111
G VF K+ DD I A +LLE S D+
Sbjct: 328 GHVFFKERWFGFDDGIYSAARLLEILSQDQ 357
>pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|C Chain C, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|E Chain E, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|G Chain G, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 1058
Score = 23.1 bits (48), Expect = 9.9
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 85 FIKKESDDRDDAISRAKKLLEDASSDRL 112
F K S D +A+++ ++ L+DA +DR+
Sbjct: 409 FDPKVSLDDPEALTKIRRELKDAGADRI 436
>pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|C Chain C, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|E Chain E, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|G Chain G, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|C Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|E Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|G Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
Length = 1073
Score = 23.1 bits (48), Expect = 9.9
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 85 FIKKESDDRDDAISRAKKLLEDASSDRL 112
F K S D +A+++ ++ L+DA +DR+
Sbjct: 409 FDPKVSLDDPEALTKIRRELKDAGADRI 436
>pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|C Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|E Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|G Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1CS0|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1CS0|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1CS0|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1CS0|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1C30|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|A Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|C Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|E Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|G Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1KEE|A Chain A, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|C Chain C, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|E Chain E, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|G Chain G, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli
Length = 1073
Score = 23.1 bits (48), Expect = 9.9
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 85 FIKKESDDRDDAISRAKKLLEDASSDRL 112
F K S D +A+++ ++ L+DA +DR+
Sbjct: 409 FDPKVSLDDPEALTKIRRELKDAGADRI 436
>pdb|1K35|A Chain A, Crystal Structure Of PhosphomannomutasePHOSPHOGLUCOMUTASE
From P.Aeruginosa
Length = 463
Score = 23.1 bits (48), Expect = 9.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 82 GAVFIKKESDDRDDAISRAKKLLEDASSDR 111
G VF K+ DD I A +LLE S D+
Sbjct: 328 GHVFFKERWFGFDDGIYSAARLLEILSQDQ 357
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.313 0.133 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 638,300
Number of Sequences: 13198
Number of extensions: 24385
Number of successful extensions: 53
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 21
length of query: 124
length of database: 2,899,336
effective HSP length: 77
effective length of query: 47
effective length of database: 1,883,090
effective search space: 88505230
effective search space used: 88505230
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)