BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645746|ref|NP_207923.1| ATP synthase F1, subunit
beta (atpD) [Helicobacter pylori 26695]
(469 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1MAB|B Chain B, Rat Liver F1-Atpase 620 e-178
pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Coval... 618 e-178
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (... 618 e-178
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd (Dic... 615 e-177
pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Coval... 615 e-177
pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Fre... 606 e-174
pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1... 600 e-172
pdb|1SKY|B Chain B, Crystal Structure Of The Nucleotide Fre... 126 5e-30
pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexe... 118 2e-27
pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd (Dic... 118 2e-27
pdb|1MAB|A Chain A, Rat Liver F1-Atpase 117 2e-27
pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1... 114 2e-26
pdb|2MJP|A Chain A, Structure-Based Identification Of The B... 30 0.44
pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX 29 0.99
pdb|1ZAP| Secreted Aspartic Protease From C. Albicans 28 2.9
pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) Fro... 28 2.9
pdb|1HD2|A Chain A, Human Peroxiredoxin 5 >gi|16975155|pdb|... 28 2.9
pdb|1JJO|C Chain C, Crystal Structure Of Mouse Neuroserpin ... 27 4.9
pdb|1KHV|B Chain B, Crystal Structure Of Rabbit Hemorrhagic... 26 8.4
pdb|1SCT|A Chain A, Scapharca Tetrameric Hemoglobin, Co-Sta... 26 8.4
pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX 26 8.4
pdb|1FN4|B Chain B, Crystal Structure Of Fab198, An Efficie... 26 8.4
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
Length = 479
Score = 620 bits (1598), Expect = e-178
Identities = 317/467 (67%), Positives = 373/467 (78%), Gaps = 10/467 (2%)
Query: 6 GKIIQVLGPVVDVEFESYLPAIFEALDINFEVNGVQKSLVLEVAAHLGGNRVRAIAMDMT 65
G+I+ V+G VVDV+F+ LP I AL EV G + LVLEVA HLG + VR IAMD T
Sbjct: 11 GQIVAVIGAVVDVQFDEGLPPILNAL----EVQGRESRLVLEVAQHLGESTVRTIAMDGT 66
Query: 66 EGLVRNQVIKARGKMIEVPVGEEVLGRIFNVVGESIDNLEPLKPSLTWPIHRKAPSFEQQ 125
EGLVR Q + G I++PVG E LGRI NV+GE ID P+K PIH +AP F +
Sbjct: 67 EGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFIEM 126
Query: 126 STKTEMFETGIKVIDLLAPYSKGGKVGLFGGAGVGKTVIIMELIHNVAYKHNGYSVFAGV 185
S + E+ TGIKV+DLLAPY+KGGK+GLFGGAGVGKTV+IMELI+NVA H GYSVFAGV
Sbjct: 127 SVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 186
Query: 186 GERTREGNDLYFEMKEGGVLD------KVALCYGQMNEPPGARNRIAFTGLTMAEYFRDE 239
GERTREGNDLY EM E GV++ KVAL YGQMNEPPGAR R+A TGLT+AEYFRD+
Sbjct: 187 GERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQ 246
Query: 240 KGLDVLMFIDNIFRYAQSGAEMSALLGRIPSAVGYQPTLAGEMGKLQERIASTKNGSITS 299
+G DVL+FIDNIFR+ Q+G+E+SALLGRIPSAVGYQPTLA +MG +QERI +TK GSITS
Sbjct: 247 EGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITS 306
Query: 300 VQAVYVPADDLTDPAPASVFAHLDATTVLNRKIAEKGIYPAVDPLDSTSRILSPQMIGEK 359
VQA+YVPADDLTDPAPA+ FAHLDATTVL+R IAE GIYPAVDPLDSTSRI+ P ++G +
Sbjct: 307 VQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSE 366
Query: 360 HYEVATGIQQVLQKYKDLQDIIAILGLDELSEEDKKTVERARKIEKFLSQPFFVAEVFTG 419
HY+VA G+Q++LQ YK LQDIIAILG+DELSEEDK TV RARKI++FLSQPF VAEVFTG
Sbjct: 367 HYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTG 426
Query: 420 SPGKYVTLQETLEGFGGILEGKYDHIPENAFYMVGSIQEVLEKAKNM 466
GK V L+ET++GF IL G YDH+PE AFYMVG I+E + KA +
Sbjct: 427 HMGKLVPLKETIKGFQQILAGDYDHLPEQAFYMVGPIEEAVAKADKL 473
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 618 bits (1593), Expect = e-178
Identities = 317/470 (67%), Positives = 373/470 (78%), Gaps = 10/470 (2%)
Query: 3 AMEGKIIQVLGPVVDVEFESYLPAIFEALDINFEVNGVQKSLVLEVAAHLGGNRVRAIAM 62
A G+I+ V+G VVDV+F+ LP I AL EV G + LVLEVA HLG + VR IAM
Sbjct: 12 ATTGRIVAVIGAVVDVQFDEGLPPILNAL----EVQGRETRLVLEVAQHLGESTVRTIAM 67
Query: 63 DMTEGLVRNQVIKARGKMIEVPVGEEVLGRIFNVVGESIDNLEPLKPSLTWPIHRKAPSF 122
D TEGLVR Q + G I +PVG E LGRI NV+GE ID P+K IH +AP F
Sbjct: 68 DGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEF 127
Query: 123 EQQSTKTEMFETGIKVIDLLAPYSKGGKVGLFGGAGVGKTVIIMELIHNVAYKHNGYSVF 182
+ S + E+ TGIKV+DLLAPY+KGGK+GLFGGAGVGKTV+IMELI+NVA H GYSVF
Sbjct: 128 VEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 187
Query: 183 AGVGERTREGNDLYFEMKEGGVLD------KVALCYGQMNEPPGARNRIAFTGLTMAEYF 236
AGVGERTREGNDLY EM E GV++ KVAL YGQMNEPPGAR R+A TGLT+AEYF
Sbjct: 188 AGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYF 247
Query: 237 RDEKGLDVLMFIDNIFRYAQSGAEMSALLGRIPSAVGYQPTLAGEMGKLQERIASTKNGS 296
RD++G DVL+FIDNIFR+ Q+G+E+SALLGRIPSAVGYQPTLA +MG +QERI +TK GS
Sbjct: 248 RDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGS 307
Query: 297 ITSVQAVYVPADDLTDPAPASVFAHLDATTVLNRKIAEKGIYPAVDPLDSTSRILSPQMI 356
ITSVQA+YVPADDLTDPAPA+ FAHLDATTVL+R IAE GIYPAVDPLDSTSRI+ P ++
Sbjct: 308 ITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIV 367
Query: 357 GEKHYEVATGIQQVLQKYKDLQDIIAILGLDELSEEDKKTVERARKIEKFLSQPFFVAEV 416
G +HY+VA G+Q++LQ YK LQDIIAILG+DELSEEDK TV RARKI++FLSQPF VAEV
Sbjct: 368 GSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEV 427
Query: 417 FTGSPGKYVTLQETLEGFGGILEGKYDHIPENAFYMVGSIQEVLEKAKNM 466
FTG GK V L+ET++GF IL G+YDH+PE AFYMVG I+E + KA +
Sbjct: 428 FTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKL 477
>pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
Length = 482
Score = 618 bits (1593), Expect = e-178
Identities = 317/470 (67%), Positives = 373/470 (78%), Gaps = 10/470 (2%)
Query: 3 AMEGKIIQVLGPVVDVEFESYLPAIFEALDINFEVNGVQKSLVLEVAAHLGGNRVRAIAM 62
A G+I+ V+G VVDV+F+ LP I AL EV G + LVLEVA HLG + VR IAM
Sbjct: 12 ATTGRIVAVIGAVVDVQFDEGLPPILNAL----EVQGRETRLVLEVAQHLGESTVRTIAM 67
Query: 63 DMTEGLVRNQVIKARGKMIEVPVGEEVLGRIFNVVGESIDNLEPLKPSLTWPIHRKAPSF 122
D TEGLVR Q + G I +PVG E LGRI NV+GE ID P+K IH +AP F
Sbjct: 68 DGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEF 127
Query: 123 EQQSTKTEMFETGIKVIDLLAPYSKGGKVGLFGGAGVGKTVIIMELIHNVAYKHNGYSVF 182
+ S + E+ TGIKV+DLLAPY+KGGK+GLFGGAGVGKTV+IMELI+NVA H GYSVF
Sbjct: 128 VEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 187
Query: 183 AGVGERTREGNDLYFEMKEGGVLD------KVALCYGQMNEPPGARNRIAFTGLTMAEYF 236
AGVGERTREGNDLY EM E GV++ KVAL YGQMNEPPGAR R+A TGLT+AEYF
Sbjct: 188 AGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYF 247
Query: 237 RDEKGLDVLMFIDNIFRYAQSGAEMSALLGRIPSAVGYQPTLAGEMGKLQERIASTKNGS 296
RD++G DVL+FIDNIFR+ Q+G+E+SALLGRIPSAVGYQPTLA +MG +QERI +TK GS
Sbjct: 248 RDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGS 307
Query: 297 ITSVQAVYVPADDLTDPAPASVFAHLDATTVLNRKIAEKGIYPAVDPLDSTSRILSPQMI 356
ITSVQA+YVPADDLTDPAPA+ FAHLDATTVL+R IAE GIYPAVDPLDSTSRI+ P ++
Sbjct: 308 ITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIV 367
Query: 357 GEKHYEVATGIQQVLQKYKDLQDIIAILGLDELSEEDKKTVERARKIEKFLSQPFFVAEV 416
G +HY+VA G+Q++LQ YK LQDIIAILG+DELSEEDK TV RARKI++FLSQPF VAEV
Sbjct: 368 GSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEV 427
Query: 417 FTGSPGKYVTLQETLEGFGGILEGKYDHIPENAFYMVGSIQEVLEKAKNM 466
FTG GK V L+ET++GF IL G+YDH+PE AFYMVG I+E + KA +
Sbjct: 428 FTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKL 477
>pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 615 bits (1587), Expect = e-177
Identities = 316/470 (67%), Positives = 372/470 (78%), Gaps = 10/470 (2%)
Query: 3 AMEGKIIQVLGPVVDVEFESYLPAIFEALDINFEVNGVQKSLVLEVAAHLGGNRVRAIAM 62
A G+I+ V+G VVDV+F+ LP I AL EV G + LVLEVA HLG + VR IAM
Sbjct: 12 ATTGRIVAVIGAVVDVQFDEGLPPILNAL----EVQGRETRLVLEVAQHLGESTVRTIAM 67
Query: 63 DMTEGLVRNQVIKARGKMIEVPVGEEVLGRIFNVVGESIDNLEPLKPSLTWPIHRKAPSF 122
D TEGLVR Q + G I +PVG E LGRI NV+GE ID P+K IH +AP F
Sbjct: 68 DGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEF 127
Query: 123 EQQSTKTEMFETGIKVIDLLAPYSKGGKVGLFGGAGVGKTVIIMELIHNVAYKHNGYSVF 182
+ S + E+ TGIKV+DLLAPY+KGGK+GLFGGAGVGKTV+IMELI+NVA H GYSVF
Sbjct: 128 VEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 187
Query: 183 AGVGERTREGNDLYFEMKEGGVLD------KVALCYGQMNEPPGARNRIAFTGLTMAEYF 236
AGVGERTREGNDLY M E GV++ KVAL YGQMNEPPGAR R+A TGLT+AEYF
Sbjct: 188 AGVGERTREGNDLYHXMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYF 247
Query: 237 RDEKGLDVLMFIDNIFRYAQSGAEMSALLGRIPSAVGYQPTLAGEMGKLQERIASTKNGS 296
RD++G DVL+FIDNIFR+ Q+G+E+SALLGRIPSAVGYQPTLA +MG +QERI +TK GS
Sbjct: 248 RDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGS 307
Query: 297 ITSVQAVYVPADDLTDPAPASVFAHLDATTVLNRKIAEKGIYPAVDPLDSTSRILSPQMI 356
ITSVQA+YVPADDLTDPAPA+ FAHLDATTVL+R IAE GIYPAVDPLDSTSRI+ P ++
Sbjct: 308 ITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIV 367
Query: 357 GEKHYEVATGIQQVLQKYKDLQDIIAILGLDELSEEDKKTVERARKIEKFLSQPFFVAEV 416
G +HY+VA G+Q++LQ YK LQDIIAILG+DELSEEDK TV RARKI++FLSQPF VAEV
Sbjct: 368 GSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEV 427
Query: 417 FTGSPGKYVTLQETLEGFGGILEGKYDHIPENAFYMVGSIQEVLEKAKNM 466
FTG GK V L+ET++GF IL G+YDH+PE AFYMVG I+E + KA +
Sbjct: 428 FTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKL 477
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 615 bits (1585), Expect = e-177
Identities = 316/470 (67%), Positives = 372/470 (78%), Gaps = 10/470 (2%)
Query: 3 AMEGKIIQVLGPVVDVEFESYLPAIFEALDINFEVNGVQKSLVLEVAAHLGGNRVRAIAM 62
A G+I+ V+G VVDV+F+ LP I AL EV G + LVLEVA HLG + VR IAM
Sbjct: 12 ATTGRIVAVIGAVVDVQFDEGLPPILNAL----EVQGRETRLVLEVAQHLGESTVRTIAM 67
Query: 63 DMTEGLVRNQVIKARGKMIEVPVGEEVLGRIFNVVGESIDNLEPLKPSLTWPIHRKAPSF 122
D TEGLVR Q + G I +PVG E LGRI NV+GE ID P+K IH +AP F
Sbjct: 68 DGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEF 127
Query: 123 EQQSTKTEMFETGIKVIDLLAPYSKGGKVGLFGGAGVGKTVIIMELIHNVAYKHNGYSVF 182
+ S + E+ TGIKV+DLLAPY+KGGK+GLFGGAGVGKTV+IMELI+NVA H GYSVF
Sbjct: 128 VEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 187
Query: 183 AGVGERTREGNDLYFEMKEGGVLD------KVALCYGQMNEPPGARNRIAFTGLTMAEYF 236
AGVGERTREGNDLY EM E GV++ KVAL YGQMNEPPGAR R+A TGLT+AEYF
Sbjct: 188 AGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYF 247
Query: 237 RDEKGLDVLMFIDNIFRYAQSGAEMSALLGRIPSAVGYQPTLAGEMGKLQERIASTKNGS 296
RD++G DVL+FIDNIFR+ Q+G+E+SALLGRIPSAVGYQPTLA +MG +QERI +TK GS
Sbjct: 248 RDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGS 307
Query: 297 ITSVQAVYVPADDLTDPAPASVFAHLDATTVLNRKIAEKGIYPAVDPLDSTSRILSPQMI 356
ITSVQA+ VPADDLTDPAPA+ FAHLDATTVL+R IAE GIYPAVDPLDSTSRI+ P ++
Sbjct: 308 ITSVQAIXVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIV 367
Query: 357 GEKHYEVATGIQQVLQKYKDLQDIIAILGLDELSEEDKKTVERARKIEKFLSQPFFVAEV 416
G +HY+VA G+Q++LQ YK LQDIIAILG+DELSEEDK TV RARKI++FLSQPF VAEV
Sbjct: 368 GSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEV 427
Query: 417 FTGSPGKYVTLQETLEGFGGILEGKYDHIPENAFYMVGSIQEVLEKAKNM 466
FTG GK V L+ET++GF IL G+YDH+PE AFYMVG I+E + KA +
Sbjct: 428 FTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKL 477
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 606 bits (1562), Expect = e-174
Identities = 309/467 (66%), Positives = 375/467 (80%), Gaps = 7/467 (1%)
Query: 6 GKIIQVLGPVVDVEFES-YLPAIFEALDINFEV---NGVQKSLVLEVAAHLGGNRVRAIA 61
G++IQV+GPVVDV+FE+ +LPAI+ AL I + N V L LEVA HLG + VR IA
Sbjct: 4 GRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIA 63
Query: 62 MDMTEGLVRNQVIKARGKMIEVPVGEEVLGRIFNVVGESIDNLEPLKPSLTW--PIHRKA 119
M T+GL+R + G I VPVG+ LGR+FNV+GE ID LE P+ PIHR A
Sbjct: 64 MASTDGLIRGMEVIDTGAPISVPVGQVTLGRVFNVLGEPID-LEGDIPADARRDPIHRPA 122
Query: 120 PSFEQQSTKTEMFETGIKVIDLLAPYSKGGKVGLFGGAGVGKTVIIMELIHNVAYKHNGY 179
P FE+ +T+ E+ ETGIKV+DLLAPY KGGK+GLFGGAGVGKTV+I ELIHN+A +H G
Sbjct: 123 PKFEELATEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182
Query: 180 SVFAGVGERTREGNDLYFEMKEGGVLDKVALCYGQMNEPPGARNRIAFTGLTMAEYFRDE 239
SVFAGVGERTREGNDLY EMK+ GV+ K A+ +GQMNEPPGAR R+A TGLTMAEYFRDE
Sbjct: 183 SVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALTGLTMAEYFRDE 242
Query: 240 KGLDVLMFIDNIFRYAQSGAEMSALLGRIPSAVGYQPTLAGEMGKLQERIASTKNGSITS 299
+G D L+FIDNIFR+ Q+G+E+SALLGR+PSA+GYQPTLA EMG+LQERI ST GSITS
Sbjct: 243 QGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQERITSTAKGSITS 302
Query: 300 VQAVYVPADDLTDPAPASVFAHLDATTVLNRKIAEKGIYPAVDPLDSTSRILSPQMIGEK 359
+QA+YVPADD TDPAPA+ F+HLDATT L RK+AE GIYPAVDPL STSR L+P+++GE+
Sbjct: 303 IQAIYVPADDYTDPAPATTFSHLDATTNLERKLAEMGIYPAVDPLVSTSRALAPEIVGEE 362
Query: 360 HYEVATGIQQVLQKYKDLQDIIAILGLDELSEEDKKTVERARKIEKFLSQPFFVAEVFTG 419
HY+VA +QQ L++YK+LQDIIAILG+DELS+EDK V RAR+I+ FLSQ F VAE FTG
Sbjct: 363 HYQVARKVQQTLERYKELQDIIAILGMDELSDEDKLVVHRARRIQFFLSQNFHVAEQFTG 422
Query: 420 SPGKYVTLQETLEGFGGILEGKYDHIPENAFYMVGSIQEVLEKAKNM 466
PG YV ++ET+ GF ILEGKYDH+PE+ F +VG I+EV+EKAK M
Sbjct: 423 QPGSYVPVKETVRGFKEILEGKYDHLPEDRFRLVGRIEEVVEKAKAM 469
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-Atpase
Complexed With Tentoxin
Length = 498
Score = 600 bits (1547), Expect = e-172
Identities = 306/471 (64%), Positives = 367/471 (76%), Gaps = 9/471 (1%)
Query: 6 GKIIQVLGPVVDVEFE-SYLPAIFEALDINF-EVNGVQKSLVLEVAAHLGGNRVRAIAMD 63
G+I Q++GPV++V F +P I+ AL + + G ++ EV LG NRVRA+AM
Sbjct: 21 GRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMS 80
Query: 64 MTEGLVRNQVIKARGKMIEVPVGEEVLGRIFNVVGESIDNLEPLKPSLTWPIHRKAPSFE 123
T+GL R + G + VPVG LGRIFNV+GE +DNL P+ T PIHR AP+F
Sbjct: 81 ATDGLTRGMEVIDTGAPLSVPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHRSAPAFT 140
Query: 124 QQSTKTEMFETGIKVIDLLAPYSKGGKVGLFGGAGVGKTVIIMELIHNVAYKHNGYSVFA 183
Q TK +FETGIKV++LLAPY +GGK+GLFGGAGVGKTV+IMELI+N+A H G SVF
Sbjct: 141 QLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG 200
Query: 184 GVGERTREGNDLYFEMKEGGVLD-------KVALCYGQMNEPPGARNRIAFTGLTMAEYF 236
GVGERTREGNDLY EMKE GV++ KVAL YGQMNEPPGAR R+ T LTMAEYF
Sbjct: 201 GVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYF 260
Query: 237 RDEKGLDVLMFIDNIFRYAQSGAEMSALLGRIPSAVGYQPTLAGEMGKLQERIASTKNGS 296
RD DVL+FIDNIFR+ Q+G+E+SALLGR+PSAVGYQPTL+ EMG LQERI STK GS
Sbjct: 261 RDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGS 320
Query: 297 ITSVQAVYVPADDLTDPAPASVFAHLDATTVLNRKIAEKGIYPAVDPLDSTSRILSPQMI 356
ITS+QAVYVPADDLTDPAPA+ FAHLDATTVL+R +A KGIYPAVDPLDSTS +L P+++
Sbjct: 321 ITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIV 380
Query: 357 GEKHYEVATGIQQVLQKYKDLQDIIAILGLDELSEEDKKTVERARKIEKFLSQPFFVAEV 416
GE+HYE+A +++ LQ+YK+LQDIIAILGLDELSEED+ TV RARKIE+FLSQPFFVAEV
Sbjct: 381 GEEHYEIAQRVKETLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEV 440
Query: 417 FTGSPGKYVTLQETLEGFGGILEGKYDHIPENAFYMVGSIQEVLEKAKNMK 467
FTGSPGKYV L ET+ GF IL G+ D +PE AFY+VG+I E KA N++
Sbjct: 441 FTGSPGKYVGLAETIRGFQLILSGELDSLPEQAFYLVGNIDEATAKAMNLE 491
>pdb|1SKY|B Chain B, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 502
Score = 126 bits (317), Expect = 5e-30
Identities = 97/369 (26%), Positives = 173/369 (46%), Gaps = 9/369 (2%)
Query: 45 VLEVAAHLGGNRVRAIAMDMTEGLVRNQVIKARGKMIEVPVGEEVLGRIFNVVGESIDNL 104
V+ +A +L N V + + G+ ++ G+++EVPVGE ++GR+ N +G+ +D L
Sbjct: 59 VMGMALNLEENNVGIVILGPYTGIKEGDEVRRTGRIMEVPVGETLIGRVVNPLGQPVDGL 118
Query: 105 EPLKPSLTWPIHRKAPSFEQQSTKTEMFETGIKVIDLLAPYSKGGKVGLFGGAGVGKTVI 164
P++ + T PI +AP + + E +TGIK ID L P +G + + G GKT +
Sbjct: 119 GPVETTETRPIESRAPGVMDRRSVHEPLQTGIKAIDALVPIGRGQRELIIGDRQTGKTSV 178
Query: 165 IMELIHNVAYKHNGYSVFAGVGERTREGNDLYFEMKEGGVLDKVALCYGQMNEPPGARNR 224
++ I N N ++ +G++ + + + G D + ++P
Sbjct: 179 AIDTIIN-QKDQNMICIYVAIGQKESTVATVVETLAKHGAPDYTIVVTASASQPAPLLFL 237
Query: 225 IAFTGLTMAEYFRDEKGLDVLMFIDNIFRYAQSGAEMSALLGRIPSAVGYQPTLAGEMGK 284
+ G+ M EYF G VL+ ID++ + A + ++S LL R P Y + +
Sbjct: 238 APYAGVAMGEYFM-IMGKHVLVVIDDLSKQAAAYRQLSLLLRRPPGREAYPGDIFYLHSR 296
Query: 285 LQERIASTKN----GSITSVQAVYVPADDLTDPAPASVFAHLDATTVLNRKIAEKGIYPA 340
L ER A + GS+T++ V A D++ P +V + D L + G+ PA
Sbjct: 297 LLERAAKLSDAKGGGSLTALPFVETQAGDISAYIPTNVISITDGQIFLQSDLFFSGVRPA 356
Query: 341 VDPLDSTSRILSPQMIGEKHYEVATGIQQVLQKYKDLQDIIAILGLDELSEEDKKTVERA 400
++ S SR+ I + +VA ++ L Y++L + A G D L + + V R
Sbjct: 357 INAGLSVSRVGGAAQI-KAMKKVAGTLRLDLAAYREL-EAFAQFGSD-LDKATQANVARG 413
Query: 401 RKIEKFLSQ 409
+ + L Q
Sbjct: 414 ARTVEVLKQ 422
>pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
Length = 510
Score = 118 bits (295), Expect = 2e-27
Identities = 99/412 (24%), Positives = 186/412 (45%), Gaps = 22/412 (5%)
Query: 16 VDVEFESYLPAIFEALDINFEVNGVQKSLVLEVAAHLGG-------NRVRAIAMDMTEGL 68
VD+E + +I + + + VQ ++E ++ L G + V + + +
Sbjct: 23 VDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLI 82
Query: 69 VRNQVIKARGKMIEVPVGEEVLGRIFNVVGESIDNLEPLKPSLTWPIHRKAPSFEQQSTK 128
++K G +++VPVGEE+LGR+ + +G +ID P+ + KAP + +
Sbjct: 83 KEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISV 142
Query: 129 TEMFETGIKVIDLLAPYSKGGKVGLFGGAGVGKTVIIMELIHNVAYKHNG-------YSV 181
E +TGIK +D L P +G + + G GKT I ++ I N ++G Y +
Sbjct: 143 REPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCI 202
Query: 182 FAGVGERTREGNDLYFEMKEGGVLDKVALCYGQMNEPPGARNRIAFTGLTMAEYFRDEKG 241
+ +G++ L + + + + ++ + ++G +M EYFRD G
Sbjct: 203 YVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRD-NG 261
Query: 242 LDVLMFIDNIFRYAQSGAEMSALLGRIPSAVGYQPTLAGEMGKLQERIASTKN----GSI 297
L+ D++ + A + +MS LL R P Y + +L ER A + GS+
Sbjct: 262 KHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSL 321
Query: 298 TSVQAVYVPADDLTDPAPASVFAHLDATTVLNRKIAEKGIYPAVDPLDSTSRILSPQMIG 357
T++ + A D++ P +V + D L ++ KGI PA++ S SR+ S
Sbjct: 322 TALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQT- 380
Query: 358 EKHYEVATGIQQVLQKYKDLQDIIAILGLDELSEEDKKTVERARKIEKFLSQ 409
+VA ++ L +Y+++ A G D L ++ + R ++ + L Q
Sbjct: 381 RAMKQVAGTMKLELAQYREVA-AFAQFGSD-LDAATQQLLSRGVRLTELLKQ 430
>pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|B Chain B, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|C Chain C, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E1R|C Chain C, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|C Chain C, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|C Chain C, Bovine Mitochondrial F1-Atpase
pdb|1H8H|C Chain C, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1NBM|C Chain C, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1H8E|C Chain C, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E1R|A Chain A, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|A Chain A, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|A Chain A, Bovine Mitochondrial F1-Atpase
pdb|1BMF|B Chain B, Bovine Mitochondrial F1-Atpase
pdb|1H8H|A Chain A, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1NBM|A Chain A, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|B Chain B, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1H8E|A Chain A, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|B Chain B, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E1R|B Chain B, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|B Chain B, Bovine Mitochondrial F1-Atpase At 100k
pdb|1H8H|B Chain B, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1QO1|C Chain C, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|A Chain A, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|B Chain B, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
Length = 510
Score = 118 bits (295), Expect = 2e-27
Identities = 99/412 (24%), Positives = 186/412 (45%), Gaps = 22/412 (5%)
Query: 16 VDVEFESYLPAIFEALDINFEVNGVQKSLVLEVAAHLGG-------NRVRAIAMDMTEGL 68
VD+E + +I + + + VQ ++E ++ L G + V + + +
Sbjct: 23 VDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLI 82
Query: 69 VRNQVIKARGKMIEVPVGEEVLGRIFNVVGESIDNLEPLKPSLTWPIHRKAPSFEQQSTK 128
++K G +++VPVGEE+LGR+ + +G +ID P+ + KAP + +
Sbjct: 83 KEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISV 142
Query: 129 TEMFETGIKVIDLLAPYSKGGKVGLFGGAGVGKTVIIMELIHNVAYKHNG-------YSV 181
E +TGIK +D L P +G + + G GKT I ++ I N ++G Y +
Sbjct: 143 REPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCI 202
Query: 182 FAGVGERTREGNDLYFEMKEGGVLDKVALCYGQMNEPPGARNRIAFTGLTMAEYFRDEKG 241
+ +G++ L + + + + ++ + ++G +M EYFRD G
Sbjct: 203 YVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRD-NG 261
Query: 242 LDVLMFIDNIFRYAQSGAEMSALLGRIPSAVGYQPTLAGEMGKLQERIASTKN----GSI 297
L+ D++ + A + +MS LL R P Y + +L ER A + GS+
Sbjct: 262 KHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSL 321
Query: 298 TSVQAVYVPADDLTDPAPASVFAHLDATTVLNRKIAEKGIYPAVDPLDSTSRILSPQMIG 357
T++ + A D++ P +V + D L ++ KGI PA++ S SR+ S
Sbjct: 322 TALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQT- 380
Query: 358 EKHYEVATGIQQVLQKYKDLQDIIAILGLDELSEEDKKTVERARKIEKFLSQ 409
+VA ++ L +Y+++ A G D L ++ + R ++ + L Q
Sbjct: 381 RAMKQVAGTMKLELAQYREVA-AFAQFGSD-LDAATQQLLSRGVRLTELLKQ 430
>pdb|1MAB|A Chain A, Rat Liver F1-Atpase
Length = 510
Score = 117 bits (294), Expect = 2e-27
Identities = 99/412 (24%), Positives = 187/412 (45%), Gaps = 22/412 (5%)
Query: 16 VDVEFESYLPAIFEALDINFEVNGVQKSLVLEVAAHLGG-------NRVRAIAMDMTEGL 68
VD+E + +I + + + VQ ++E ++ L G + V + + +
Sbjct: 23 VDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLI 82
Query: 69 VRNQVIKARGKMIEVPVGEEVLGRIFNVVGESIDNLEPLKPSLTWPIHRKAPSFEQQSTK 128
++K G +++VPVG+E+LGR+ + +G +ID P+ + + KAP + +
Sbjct: 83 KEGDIVKRTGAIVDVPVGDELLGRVVDALGNAIDGKGPVGSKIRRRVGLKAPGIIPRISV 142
Query: 129 TEMFETGIKVIDLLAPYSKGGKVGLFGGAGVGKTVIIMELIHNVAYKHNG-------YSV 181
E +TGIK +D L P +G + + G GKT I ++ I N ++G Y +
Sbjct: 143 REPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCI 202
Query: 182 FAGVGERTREGNDLYFEMKEGGVLDKVALCYGQMNEPPGARNRIAFTGLTMAEYFRDEKG 241
+ +G++ L + + + + ++ + ++G +M EYFRD G
Sbjct: 203 YVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRD-NG 261
Query: 242 LDVLMFIDNIFRYAQSGAEMSALLGRIPSAVGYQPTLAGEMGKLQERIA----STKNGSI 297
L+ D++ + A + +MS LL R P Y + +L ER A S GS+
Sbjct: 262 KHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDSFGGGSL 321
Query: 298 TSVQAVYVPADDLTDPAPASVFAHLDATTVLNRKIAEKGIYPAVDPLDSTSRILSPQMIG 357
T++ + A D++ P +V + D L ++ KGI PA++ S SR+ S
Sbjct: 322 TALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQT- 380
Query: 358 EKHYEVATGIQQVLQKYKDLQDIIAILGLDELSEEDKKTVERARKIEKFLSQ 409
+VA ++ L +Y+++ A G D L ++ + R ++ + L Q
Sbjct: 381 RAMKQVAGTMKLELAQYREVA-AFAQFGSD-LDAATQQLLSRGVRLTELLKQ 430
>pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|A Chain A, Crystal Structure Of Spinach Chloroplast F1-Atpase
Complexed With Tentoxin
Length = 507
Score = 114 bits (285), Expect = 2e-26
Identities = 94/393 (23%), Positives = 174/393 (43%), Gaps = 17/393 (4%)
Query: 48 VAAHLGGNRVRAIAMDMTEGLVRNQVIKARGKMIEVPVGEEVLGRIFNVVGESIDNLEPL 107
+A +L N V + M + +KA G++ ++PV E LGR+ N + + ID +
Sbjct: 63 IALNLESNNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEI 122
Query: 108 KPSLTWPIHRKAPSFEQQSTKTEMFETGIKVIDLLAPYSKGGKVGLFGGAGVGKTVIIME 167
S + I AP + + E +TG+ ID + P +G + + G GKT + +
Sbjct: 123 TASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAVATD 182
Query: 168 LIHNVAYKHNGYSVFAGVGERTREGNDLYFEMKEGGVLDKVALCYGQMNEPPGARNRIAF 227
I N N V+ +G++ + +E G ++ + + P + +
Sbjct: 183 TILN-QQGQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPY 241
Query: 228 TGLTMAEYFRDEKGLDVLMFIDNIFRYAQSGAEMSALLGRIPSAVGYQPTLAGEMGKLQE 287
TG +AEYF + L+ D++ + AQ+ +MS LL R P Y + +L E
Sbjct: 242 TGAALAEYFM-YRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 300
Query: 288 RIASTKN----GSITSVQAVYVPADDLTDPAPASVFAHLDATTVLNRKIAEKGIYPAVDP 343
R A + GS+T++ V A D++ P +V + D L+ + GI PA++
Sbjct: 301 RAAKLSSLLGEGSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINV 360
Query: 344 LDSTSRILSPQMIGEKHYEVATGIQQVLQKYKDLQDIIAILGLDELSEEDKKTVERARKI 403
S SR+ S I + +VA ++ L ++ +L+ +L + + + R +++
Sbjct: 361 GISVSRVGSAAQI-KAMKKVAGKLKLELAQFAELEAFAQF--ASDLDKATQNQLARGQRL 417
Query: 404 EKFLSQPFF--------VAEVFTGSPGKYVTLQ 428
+ L QP V ++TG+ G +L+
Sbjct: 418 RELLKQPQSAPLTVEEQVMTIYTGTNGYLDSLE 450
>pdb|2MJP|A Chain A, Structure-Based Identification Of The Biochemical Function
Of A Hypothetical Protein From Methanococcus
Jannaschii:mj0226
pdb|2MJP|B Chain B, Structure-Based Identification Of The Biochemical Function
Of A Hypothetical Protein From Methanococcus
Jannaschii:mj0226
pdb|1B78|A Chain A, Structure-Based Identification Of The Biochemical Function
Of A Hypothetical Protein From Methanococcus
Jannaschii:mj0226
pdb|1B78|B Chain B, Structure-Based Identification Of The Biochemical Function
Of A Hypothetical Protein From Methanococcus
Jannaschii:mj0226
Length = 193
Score = 30.4 bits (67), Expect = 0.44
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 367 IQQVLQKYKDLQDIIAILGLDELSEEDKKTVERARKIEKFLSQPFFVAEVFTGSPGKYVT 426
I+Q+ Y ++Q L+E++E K V K + F E G PG Y
Sbjct: 36 IEQIKISYPEIQGT-----LEEVAEFGAKWVYNILKKPVIVEDSGFFVEALNGFPGTYSK 90
Query: 427 -LQETL--EGFGGILEGK 441
+QET+ EG +LEGK
Sbjct: 91 FVQETIGNEGILKLLEGK 108
>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX
Length = 394
Score = 29.3 bits (64), Expect = 0.99
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 174 YKH----NGYSVFAGVGERT-REGNDLYFEMKEGGVLDKVALCYGQMNEPPGARNRIAFT 228
YKH G +++ G+ R RE LY E G ++K++ ++ +PP ++ +
Sbjct: 298 YKHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLG 357
Query: 229 GLTMAEYFRDE 239
G +A+ +D+
Sbjct: 358 GAVLADIMKDK 368
>pdb|1ZAP| Secreted Aspartic Protease From C. Albicans
Length = 341
Score = 27.7 bits (60), Expect = 2.9
Identities = 19/56 (33%), Positives = 27/56 (47%), Gaps = 5/56 (8%)
Query: 184 GVGERTREGNDLY----FEMKEGGVLDKVALCYGQMNEPPGARNRIAFTGLTMAEY 235
GVG +T E Y +K+ GV+ K A +N P A +I F G+ A+Y
Sbjct: 125 GVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSL-YLNSPDSATGQIIFGGVDNAKY 179
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
Length = 342
Score = 27.7 bits (60), Expect = 2.9
Identities = 19/56 (33%), Positives = 27/56 (47%), Gaps = 5/56 (8%)
Query: 184 GVGERTREGNDLY----FEMKEGGVLDKVALCYGQMNEPPGARNRIAFTGLTMAEY 235
GVG +T E Y +K+ GV+ K A +N P A +I F G+ A+Y
Sbjct: 125 GVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSL-YLNSPDAATGQIIFGGVDNAKY 179
>pdb|1HD2|A Chain A, Human Peroxiredoxin 5
pdb|1H4O|A Chain A, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|B Chain B, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|C Chain C, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|D Chain D, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|E Chain E, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|F Chain F, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|G Chain G, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|H Chain H, Monoclinic Form Of Human Peroxiredoxin 5
Length = 161
Score = 27.7 bits (60), Expect = 2.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 415 EVFTGSPGKYVTLQETLEGFGGILEG 440
EVF G PG V L E +G G+L G
Sbjct: 13 EVFEGEPGNKVNLAELFKGKKGVLFG 38
>pdb|1JJO|C Chain C, Crystal Structure Of Mouse Neuroserpin (Cleaved Form)
pdb|1JJO|D Chain D, Crystal Structure Of Mouse Neuroserpin (Cleaved Form)
Length = 261
Score = 26.9 bits (58), Expect = 4.9
Identities = 21/73 (28%), Positives = 37/73 (49%), Gaps = 6/73 (8%)
Query: 343 PLDSTSRILSPQMIGE-----KHYEVATGIQQ-VLQKYKDLQDIIAILGLDELSEEDKKT 396
PL + +L Q+I E K +V + + +++ DL+DI+ LG+ E+ +D
Sbjct: 163 PLATLEPLLKAQLIEEWANSVKKQKVEVYLPRFTVEQEIDLKDILKALGVTEIFIKDANL 222
Query: 397 VERARKIEKFLSQ 409
+ K E FLS+
Sbjct: 223 TAMSDKKELFLSK 235
>pdb|1KHV|B Chain B, Crystal Structure Of Rabbit Hemorrhagic Disease Virus Rna-
Dependent Rna Polymerase Complexed With Lu3+
pdb|1KHW|B Chain B, Crystal Structure Of Rabbit Hemorrhagic Disease Virus Rna-
Dependent Rna Polymerase Complexed With Mn2+
pdb|1KHV|A Chain A, Crystal Structure Of Rabbit Hemorrhagic Disease Virus Rna-
Dependent Rna Polymerase Complexed With Lu3+
pdb|1KHW|A Chain A, Crystal Structure Of Rabbit Hemorrhagic Disease Virus Rna-
Dependent Rna Polymerase Complexed With Mn2+
Length = 516
Score = 26.2 bits (56), Expect = 8.4
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 131 MFETGIKVIDLLAPYSK--GGKVGLFGGAGVGKTVIIMELIHNVAYK 175
++ G+K D L P K GK L G VG V + HN+ YK
Sbjct: 167 IYACGLK--DELRPLDKVKEGKKRLLWGCDVGVAVCAAAVFHNICYK 211
>pdb|1SCT|A Chain A, Scapharca Tetrameric Hemoglobin, Co-State
pdb|1SCT|C Chain C, Scapharca Tetrameric Hemoglobin, Co-State
pdb|1SCT|E Chain E, Scapharca Tetrameric Hemoglobin, Co-State
pdb|1SCT|G Chain G, Scapharca Tetrameric Hemoglobin, Co-State
Length = 150
Score = 26.2 bits (56), Expect = 8.4
Identities = 19/68 (27%), Positives = 31/68 (44%), Gaps = 2/68 (2%)
Query: 282 MGKLQERIASTK--NGSITSVQAVYVPADDLTDPAPASVFAHLDATTVLNRKIAEKGIYP 339
+G +Q+ A++K +IT A+ D L DP+ A +NRKI+
Sbjct: 55 LGDVQKGKANSKLRGHAITLTYALNNFVDSLDDPSRLKCVVEKFAVNHINRKISGDAFGA 114
Query: 340 AVDPLDST 347
V+P+ T
Sbjct: 115 IVEPMKET 122
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 174
Score = 26.2 bits (56), Expect = 8.4
Identities = 17/71 (23%), Positives = 36/71 (49%), Gaps = 1/71 (1%)
Query: 15 VVDVEFESYLPAIFEALDINFEVNGVQKSLVL-EVAAHLGGNRVRAIAMDMTEGLVRNQV 73
+V+ + + Y+P +FE + EV+G Q L L + A +R+R ++ T+ ++
Sbjct: 21 IVNSKDQFYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 80
Query: 74 IKARGKMIEVP 84
I + + +P
Sbjct: 81 IDSPDSLENIP 91
>pdb|1FN4|B Chain B, Crystal Structure Of Fab198, An Efficient Protector Of
Acetylcholine Receptor Against Myasthenogenic Antibodies
pdb|1FN4|D Chain D, Crystal Structure Of Fab198, An Efficient Protector Of
Acetylcholine Receptor Against Myasthenogenic Antibodies
Length = 218
Score = 26.2 bits (56), Expect = 8.4
Identities = 26/120 (21%), Positives = 51/120 (41%), Gaps = 8/120 (6%)
Query: 224 RIAFTGLTMAEYFRDEKGLDVLMFIDNIFRYAQSGAEMSALLGRIPSAV-GYQP---TLA 279
R + G + ++ D G ++ + ++F A A + + + V GY P T+
Sbjct: 97 RDLYGGYPLGFWYFDFWGPGTMVTVSSVFPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVT 156
Query: 280 GEMGKLQERI----ASTKNGSITSVQAVYVPADDLTDPAPASVFAHLDATTVLNRKIAEK 335
G L + A ++G T +V VP+ + A AH ++T +++KI +
Sbjct: 157 WNSGALSSGVHTFPAVLQSGLYTLTSSVTVPSSTWSSQAVTCNVAHPASSTKVDKKIVPR 216
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.137 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,636,909
Number of Sequences: 13198
Number of extensions: 114985
Number of successful extensions: 316
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 279
Number of HSP's gapped (non-prelim): 22
length of query: 469
length of database: 2,899,336
effective HSP length: 92
effective length of query: 377
effective length of database: 1,685,120
effective search space: 635290240
effective search space used: 635290240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)