BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644744|ref|NP_206914.1| hypothetical protein
[Helicobacter pylori 26695]
(628 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1MJH|B Chain B, Structure-Based Assignment Of The Bioch... 33 0.12
pdb|1CK1|A Chain A, Structure Of Staphylococcal Enterotoxin... 32 0.16
pdb|1HA0|A Chain A, Hemagglutinin Precursor Ha0 30 0.62
pdb|1HTM|D Chain D, Hemagglutinin Ectodomain (Soluble Fragm... 30 0.62
pdb|1QU1|F Chain F, Crystal Structure Of Eha2 (23-185) >gi|... 30 0.62
pdb|2VIU|B Chain B, Influenza Virus Hemagglutinin >gi|49411... 30 0.62
pdb|5HMG|B Chain B, Hemagglutinin (D112(B)G) (Bromelain Dig... 30 0.81
pdb|1E6V|B Chain B, Methyl-Coenzyme M Reductase From Methan... 30 1.1
pdb|2MPR|A Chain A, Maltoporin From Salmonella Typhimurium ... 29 1.4
pdb|1YGP|A Chain A, Phosphorylated Form Of Yeast Glycogen P... 29 1.4
pdb|1AU1|A Chain A, Human Interferon-Beta Crystal Structure... 29 1.4
pdb|1MPR|A Chain A, Maltoporin From Salmonella Typhimurium ... 29 1.4
pdb|1AF6|A Chain A, Maltoporin Sucrose Complex >gi|3114532|... 28 2.3
pdb|1PCL| Pectate Lyase E (Pele) (E.C.4.2.2.2) 28 3.1
pdb|1KLG|D Chain D, Crystal Structure Of Hla-Dr1TPI(23-37, ... 28 4.0
pdb|1I4X|A Chain A, Staphylococcal Enterotoxin C2, Monoclin... 27 5.2
pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a-Domain O... 27 5.2
pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase >gi|... 27 6.8
pdb|1DMT|A Chain A, Structure Of Human Neutral Endopeptidas... 27 6.8
pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase >gi|... 27 6.8
>pdb|1MJH|B Chain B, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
pdb|1MJH|A Chain A, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
Length = 162
Score = 32.7 bits (73), Expect = 0.12
Identities = 29/88 (32%), Positives = 49/88 (54%), Gaps = 13/88 (14%)
Query: 476 LIYPTQ-SEQA----KNLKIARQ-KCEEII--KYANEKKTQVEEVF---LKVAEFLEEVE 524
++YPT SE A K++K + K EE+I +E++ + ++F L VA + VE
Sbjct: 8 ILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVE 67
Query: 525 KLHE--KNKLEELDFNKLENLSAEIDNI 550
+ KNKL E NK+EN+ E++++
Sbjct: 68 EFENELKNKLTEEAKNKMENIKKELEDV 95
>pdb|1CK1|A Chain A, Structure Of Staphylococcal Enterotoxin C3
pdb|1JCK|B Chain B, T-Cell Receptor Beta Chain Complexed With Sec3
Superantigen
pdb|1JCK|D Chain D, T-Cell Receptor Beta Chain Complexed With Sec3
Superantigen
Length = 239
Score = 32.3 bits (72), Expect = 0.16
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 536 DFNKLENLSAEIDNIKELFDDKRFNSYFMDAIQSYIFHQELHIAEIVCKKTNNEDELRAK 595
D +K + + N+K L+DD ++ + ++ ++ H ++ I KK NN D+++ +
Sbjct: 10 DLHKSSEFTGTMGNMKYLYDDHYVSATKVKSVDKFLAHDLIY--NINDKKLNNYDKVKTE 67
Query: 596 QLEYIYVHKY 605
L +KY
Sbjct: 68 LLNEDLANKY 77
>pdb|1HA0|A Chain A, Hemagglutinin Precursor Ha0
Length = 494
Score = 30.4 bits (67), Expect = 0.62
Identities = 17/64 (26%), Positives = 34/64 (52%)
Query: 494 KCEEIIKYANEKKTQVEEVFLKVAEFLEEVEKLHEKNKLEELDFNKLENLSAEIDNIKEL 553
K +I+ NEK Q+E+ F +V ++++EK E K++ +N ++ E + +L
Sbjct: 372 KLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDL 431
Query: 554 FDDK 557
D +
Sbjct: 432 TDSE 435
>pdb|1HTM|D Chain D, Hemagglutinin Ectodomain (Soluble Fragment, Tbha2)
pdb|1HTM|F Chain F, Hemagglutinin Ectodomain (Soluble Fragment, Tbha2)
pdb|1HTM|B Chain B, Hemagglutinin Ectodomain (Soluble Fragment, Tbha2)
Length = 138
Score = 30.4 bits (67), Expect = 0.62
Identities = 17/64 (26%), Positives = 34/64 (52%)
Query: 494 KCEEIIKYANEKKTQVEEVFLKVAEFLEEVEKLHEKNKLEELDFNKLENLSAEIDNIKEL 553
K +I+ NEK Q+E+ F +V ++++EK E K++ +N ++ E + +L
Sbjct: 14 KLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDL 73
Query: 554 FDDK 557
D +
Sbjct: 74 TDSE 77
>pdb|1QU1|F Chain F, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|C Chain C, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|D Chain D, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|E Chain E, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|B Chain B, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|A Chain A, Crystal Structure Of Eha2 (23-185)
Length = 155
Score = 30.4 bits (67), Expect = 0.62
Identities = 17/64 (26%), Positives = 34/64 (52%)
Query: 494 KCEEIIKYANEKKTQVEEVFLKVAEFLEEVEKLHEKNKLEELDFNKLENLSAEIDNIKEL 553
K +I+ NEK Q+E+ F +V ++++EK E K++ +N ++ E + +L
Sbjct: 21 KLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDL 80
Query: 554 FDDK 557
D +
Sbjct: 81 TDSE 84
>pdb|2VIU|B Chain B, Influenza Virus Hemagglutinin
pdb|1HGE|B Chain B, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains Complex With
Alpha-2-O-Methyl-5-N-Acetyl-Alpha-D-Neuraminic Acid
pdb|1HGE|D Chain D, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains Complex With
Alpha-2-O-Methyl-5-N-Acetyl-Alpha-D-Neuraminic Acid
pdb|1HGE|F Chain F, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains Complex With
Alpha-2-O-Methyl-5-N-Acetyl-Alpha-D-Neuraminic Acid
pdb|1HGH|B Chain B, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2-O-(4'-Benzylamidocarboxybutyl)-5-N-
Acetylneuraminic Acid
pdb|1HGH|D Chain D, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2-O-(4'-Benzylamidocarboxybutyl)-5-N-
Acetylneuraminic Acid
pdb|1HGH|F Chain F, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2-O-(4'-Benzylamidocarboxybutyl)-5-N-
Acetylneuraminic Acid
pdb|1HGI|B Chain B, Hemagglutinin (Bromelain Digested) Complexed With
4-O-Acetyl-Alpha-2-O-Methyl-5-Acetyl-Neuraminic Acid
pdb|1HGI|D Chain D, Hemagglutinin (Bromelain Digested) Complexed With
4-O-Acetyl-Alpha-2-O-Methyl-5-Acetyl-Neuraminic Acid
pdb|1HGI|F Chain F, Hemagglutinin (Bromelain Digested) Complexed With
4-O-Acetyl-Alpha-2-O-Methyl-5-Acetyl-Neuraminic Acid
pdb|1HGJ|B Chain B, Hemagglutinin (Bromelain Digested) Complex With
9-Amino-9-Deoxy-Alpha-2-O-Methyl-5-N-Acetyl-Neuraminic
Acid
pdb|1HGJ|D Chain D, Hemagglutinin (Bromelain Digested) Complex With
9-Amino-9-Deoxy-Alpha-2-O-Methyl-5-N-Acetyl-Neuraminic
Acid
pdb|1HGJ|F Chain F, Hemagglutinin (Bromelain Digested) Complex With
9-Amino-9-Deoxy-Alpha-2-O-Methyl-5-N-Acetyl-Neuraminic
Acid
pdb|1HGD|B Chain B, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains
pdb|1HGD|D Chain D, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains
pdb|1HGD|F Chain F, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains
pdb|1EO8|B Chain B, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
pdb|1HGG|B Chain B, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2,3-Sialyllactose
pdb|1HGG|D Chain D, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2,3-Sialyllactose
pdb|1HGG|F Chain F, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2,3-Sialyllactose
pdb|3HMG|B Chain B, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains)
pdb|3HMG|D Chain D, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains)
pdb|3HMG|F Chain F, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains)
pdb|4HMG|B Chain B, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains) Complex With
Sialic Acid
pdb|4HMG|D Chain D, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains) Complex With
Sialic Acid
pdb|4HMG|F Chain F, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains) Complex With
Sialic Acid
pdb|1HGF|B Chain B, Hemagglutinin (Bromelain Digested)
pdb|1HGF|D Chain D, Hemagglutinin (Bromelain Digested)
pdb|1HGF|F Chain F, Hemagglutinin (Bromelain Digested)
pdb|2HMG|B Chain B, Hemagglutinin (G146(A)D) (Bromelain Digested) (Mutant With
Gly 146 Replaced By Asp In Ha1 Chains)
pdb|2HMG|D Chain D, Hemagglutinin (G146(A)D) (Bromelain Digested) (Mutant With
Gly 146 Replaced By Asp In Ha1 Chains)
pdb|2HMG|F Chain F, Hemagglutinin (G146(A)D) (Bromelain Digested) (Mutant With
Gly 146 Replaced By Asp In Ha1 Chains)
pdb|1KEN|B Chain B, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1KEN|D Chain D, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1KEN|F Chain F, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1QFU|B Chain B, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
Length = 175
Score = 30.4 bits (67), Expect = 0.62
Identities = 17/64 (26%), Positives = 34/64 (52%)
Query: 494 KCEEIIKYANEKKTQVEEVFLKVAEFLEEVEKLHEKNKLEELDFNKLENLSAEIDNIKEL 553
K +I+ NEK Q+E+ F +V ++++EK E K++ +N ++ E + +L
Sbjct: 51 KLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDL 110
Query: 554 FDDK 557
D +
Sbjct: 111 TDSE 114
>pdb|5HMG|B Chain B, Hemagglutinin (D112(B)G) (Bromelain Digested) (Mutant With
Asp 112 Replaced By Gly In Ha2 Chains) Complex With
Sialic Acid
pdb|5HMG|D Chain D, Hemagglutinin (D112(B)G) (Bromelain Digested) (Mutant With
Asp 112 Replaced By Gly In Ha2 Chains) Complex With
Sialic Acid
pdb|5HMG|F Chain F, Hemagglutinin (D112(B)G) (Bromelain Digested) (Mutant With
Asp 112 Replaced By Gly In Ha2 Chains) Complex With
Sialic Acid
Length = 175
Score = 30.0 bits (66), Expect = 0.81
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 494 KCEEIIKYANEKKTQVEEVFLKVAEFLEEVEKLHEKNKLEELDFN 538
K +I+ NEK Q+E+ F +V ++++EK E K++ +N
Sbjct: 51 KLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYN 95
>pdb|1E6V|B Chain B, Methyl-Coenzyme M Reductase From Methanopyrus Kandleri
pdb|1E6V|E Chain E, Methyl-Coenzyme M Reductase From Methanopyrus Kandleri
Length = 443
Score = 29.6 bits (65), Expect = 1.1
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Query: 300 QEGVIFALTSIVHKRLIQAIKRGVKQFSF--RPFGYTNLFD----------LHQYGYVGI 347
QEGV +AL +I+ ++ A ++ Q T +F+ LH GY
Sbjct: 186 QEGVGYALRNIMVNHIVAATRKNTMQAVCLAATLQQTAMFEMGDALGPFERLHLLGYAYQ 245
Query: 348 GMSAANMAYELV 359
G++A NM Y++V
Sbjct: 246 GLNADNMVYDIV 257
>pdb|2MPR|A Chain A, Maltoporin From Salmonella Typhimurium
pdb|2MPR|B Chain B, Maltoporin From Salmonella Typhimurium
pdb|2MPR|C Chain C, Maltoporin From Salmonella Typhimurium
Length = 421
Score = 29.3 bits (64), Expect = 1.4
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 172 YSHQIIGINQHFTRALEHGAISVGNDAKDALIGIKQH 208
Y++++I N + R L+HGAIS+G+ +G+ Q+
Sbjct: 262 YANKVINNNGNMWRILDHGAISLGDKWDLMYVGMYQN 298
>pdb|1YGP|A Chain A, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site.
pdb|1YGP|B Chain B, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site
Length = 879
Score = 29.3 bits (64), Expect = 1.4
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 505 KKTQVEEVFLKVAEFLEEVEKLHEKNKLEELDFNKLENLSAEIDNIKELFDDKRFN 560
K TQ+E+ +++ EFL++ ++ NK+ +D K EN +I N +E DD F+
Sbjct: 550 KLTQLEK-YVEDKEFLKKWNQVKLNNKIRLVDLIKKENDGVDIIN-REYLDDTLFD 603
>pdb|1AU1|A Chain A, Human Interferon-Beta Crystal Structure
pdb|1AU1|B Chain B, Human Interferon-Beta Crystal Structure
Length = 166
Score = 29.3 bits (64), Expect = 1.4
Identities = 17/86 (19%), Positives = 41/86 (46%), Gaps = 1/86 (1%)
Query: 521 EEVEKLHEKNKLEELDFNKLENLSAEIDNIKELFDDKRFNSYFMDAIQSYIFHQELHIAE 580
EE+++L + K E+ E L ++ +N ++ + + ++HQ H+
Sbjct: 42 EEIKQLQQFQK-EDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQINHLKT 100
Query: 581 IVCKKTNNEDELRAKQLEYIYVHKYW 606
++ +K ED R K + +++ +Y+
Sbjct: 101 VLEEKLEKEDFTRGKLMSSLHLKRYY 126
>pdb|1MPR|A Chain A, Maltoporin From Salmonella Typhimurium
pdb|1MPR|B Chain B, Maltoporin From Salmonella Typhimurium
pdb|1MPR|C Chain C, Maltoporin From Salmonella Typhimurium
Length = 427
Score = 29.3 bits (64), Expect = 1.4
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 172 YSHQIIGINQHFTRALEHGAISVGNDAKDALIGIKQH 208
Y++++I N + R L+HGAIS+G+ +G+ Q+
Sbjct: 268 YANKVINNNGNMWRILDHGAISLGDKWDLMYVGMYQN 304
>pdb|1AF6|A Chain A, Maltoporin Sucrose Complex
pdb|1AF6|B Chain B, Maltoporin Sucrose Complex
pdb|1AF6|C Chain C, Maltoporin Sucrose Complex
pdb|1MPM|A Chain A, Maltoporin Maltose Complex
pdb|1MPM|B Chain B, Maltoporin Maltose Complex
pdb|1MPM|C Chain C, Maltoporin Maltose Complex
pdb|1MPO|A Chain A, Maltoporin Maltohexaose Complex
pdb|1MPO|B Chain B, Maltoporin Maltohexaose Complex
pdb|1MPO|C Chain C, Maltoporin Maltohexaose Complex
pdb|1MPQ|A Chain A, Maltoporin Trehalose Complex
pdb|1MPQ|B Chain B, Maltoporin Trehalose Complex
pdb|1MPQ|C Chain C, Maltoporin Trehalose Complex
pdb|1MAL| Mol_id: 1; Molecule: Maltoporin; Chain: Null; Synonym: Lamb
pdb|1MPN|A Chain A, Maltoporin Maltotriose Complex
pdb|1MPN|B Chain B, Maltoporin Maltotriose Complex
pdb|1MPN|C Chain C, Maltoporin Maltotriose Complex
Length = 421
Score = 28.5 bits (62), Expect = 2.3
Identities = 14/38 (36%), Positives = 24/38 (62%), Gaps = 1/38 (2%)
Query: 170 ERYSHQIIGINQHFTRALEHGAISVGNDAKDALIGIKQ 207
E++++ I N H R L+HGAIS+G++ +G+ Q
Sbjct: 257 EKFAYNINN-NGHMLRILDHGAISMGDNWDMMYVGMYQ 293
>pdb|1PCL| Pectate Lyase E (Pele) (E.C.4.2.2.2)
Length = 355
Score = 28.1 bits (61), Expect = 3.1
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 44 NLLDKETN-TPLFEKSPLDSSLELYKNSENYMLYPYLYYFGLG 85
N+ D+ T P + + +Y + +YPYLY FGLG
Sbjct: 222 NVFDRVTERAPRVRFGSIHAYNNVYLGDVKHSVYPYLYSFGLG 264
>pdb|1KLG|D Chain D, Crystal Structure Of Hla-Dr1TPI(23-37, Thr28-->ile Mutant)
Complexed With Staphylococcal Enterotoxin C3 Variant 3b2
(Sec3-3b2)
pdb|1KLU|D Chain D, Crystal Structure Of Hla-Dr1TPI(23-37) Complexed With
Staphylococcal Enterotoxin C3 Variant 3b2 (Sec3-3b2)
Length = 239
Score = 27.7 bits (60), Expect = 4.0
Identities = 19/70 (27%), Positives = 35/70 (49%), Gaps = 2/70 (2%)
Query: 536 DFNKLENLSAEIDNIKELFDDKRFNSYFMDAIQSYIFHQELHIAEIVCKKTNNEDELRAK 595
D +K + + N+K L+DD ++ + ++ S+ F +L I I KK N D+++ +
Sbjct: 10 DLHKSSEFTGTMGNMKYLYDDHYVSATKVKSVDSF-FKWDL-IYNISDKKLKNYDKVKTE 67
Query: 596 QLEYIYVHKY 605
L KY
Sbjct: 68 LLNEDLAKKY 77
>pdb|1I4X|A Chain A, Staphylococcal Enterotoxin C2, Monoclinic Form
Crystallized At Ph 8.0
pdb|1SE2| Staphylococcal Enterotoxin C2, Monoclinic Form
pdb|1I4P|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin C2 At 100k
Crystallized At Ph 5.5
pdb|1I4R|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin C2 At 100k
Crystallized At Ph 6.5
pdb|1I4Q|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin C2 At 100k
Crystallized At Ph 6.0
pdb|1STE| Staphylococcal Enterotoxin C2 From Staphylococcus Aureus
pdb|1CQV|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin C2 At 100k
Crystallized At Ph 5.0
Length = 239
Score = 27.3 bits (59), Expect = 5.2
Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 536 DFNKLENLSAEIDNIKELFDDKRFNSYFMDAIQSYIFHQELHIAEIVCKKTNNEDELRAK 595
+ +K + + N+K L+DD ++ + ++ ++ H ++ I KK N D+++ +
Sbjct: 10 ELHKSSEFTGTMGNMKYLYDDHYVSATKVMSVDKFLAHDLIY--NISDKKLKNYDKVKTE 67
Query: 596 QLEYIYVHKY 605
L KY
Sbjct: 68 LLNEDLAKKY 77
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a-Domain Of Hop In Complex
With The Hsp90-Peptide Meevd
Length = 131
Score = 27.3 bits (59), Expect = 5.2
Identities = 17/65 (26%), Positives = 28/65 (42%)
Query: 454 KEMPFKEVCEKIDKSKPKPPINLIYPTQSEQAKNLKIARQKCEEIIKYANEKKTQVEEVF 513
K+ F + DK+K P N+ Y T K KC E+ + A E + E +
Sbjct: 16 KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY 75
Query: 514 LKVAE 518
++A+
Sbjct: 76 RQIAK 80
>pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3C|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 429
Score = 26.9 bits (58), Expect = 6.8
Identities = 27/97 (27%), Positives = 46/97 (46%), Gaps = 7/97 (7%)
Query: 464 KIDKSKPKPPINLIYPTQSEQAKNLKI-----ARQKCEEIIKYANEKKTQVEEVFLKVAE 518
K+++ + K I+L Q LK+ R++ +I++ K E+ FL+
Sbjct: 334 KVNEERMKKNIDLTKGLVFSQRVLLKLIEKGLTRKEAYDIVQRNALKTWNSEKHFLEYLL 393
Query: 519 FLEEVEKLHEKNKLEELDFNKLENLSAEIDNIKELFD 555
EEV+KL K +LEEL + +D+I E F+
Sbjct: 394 EDEEVKKLVTKEELEEL--FDISYYLKHVDHIFERFE 428
>pdb|1DMT|A Chain A, Structure Of Human Neutral Endopeptidase Complexed With
Phosphoramidon
Length = 696
Score = 26.9 bits (58), Expect = 6.8
Identities = 29/124 (23%), Positives = 45/124 (35%), Gaps = 9/124 (7%)
Query: 443 ATEGGARIKGAKEMPFKEVCEKIDKSKPKPPINLIYPTQSEQAKN---------LKIARQ 493
ATE + GA K + + K K INL T + + N L + +
Sbjct: 116 ATENWEQKYGASWTAEKAIAQLNSKYGKKVLINLFVGTDDKNSVNHVIHIDQPRLGLPSR 175
Query: 494 KCEEIIKYANEKKTQVEEVFLKVAEFLEEVEKLHEKNKLEELDFNKLENLSAEIDNIKEL 553
E E T + + VA + + E+L L+ NK+ L EI N
Sbjct: 176 DYYECTGIYKEACTAYVDFMISVARLIRQEERLPIDENQLALEMNKVMELEKEIANATAK 235
Query: 554 FDDK 557
+D+
Sbjct: 236 PEDR 239
>pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3U|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 431
Score = 26.9 bits (58), Expect = 6.8
Identities = 27/97 (27%), Positives = 46/97 (46%), Gaps = 7/97 (7%)
Query: 464 KIDKSKPKPPINLIYPTQSEQAKNLKI-----ARQKCEEIIKYANEKKTQVEEVFLKVAE 518
K+++ + K I+L Q LK+ R++ +I++ K E+ FL+
Sbjct: 335 KVNEERMKKNIDLTKGLVFSQRVLLKLIEKGLTRKEAYDIVQRNALKTWNSEKHFLEYLL 394
Query: 519 FLEEVEKLHEKNKLEELDFNKLENLSAEIDNIKELFD 555
EEV+KL K +LEEL + +D+I E F+
Sbjct: 395 EDEEVKKLVTKEELEEL--FDISYYLKHVDHIFERFE 429
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.139 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,537,287
Number of Sequences: 13198
Number of extensions: 148041
Number of successful extensions: 425
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 413
Number of HSP's gapped (non-prelim): 20
length of query: 628
length of database: 2,899,336
effective HSP length: 94
effective length of query: 534
effective length of database: 1,658,724
effective search space: 885758616
effective search space used: 885758616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)