BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645748|ref|NP_207925.1| ATP synthase F1, subunit
alpha (atpA) [Helicobacter pylori 26695]
(503 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1SKY|B Chain B, Crystal Structure Of The Nucleotide Fre... 620 e-179
pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexe... 594 e-171
pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd (Dic... 594 e-171
pdb|1MAB|A Chain A, Rat Liver F1-Atpase 593 e-170
pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1... 587 e-169
pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Fre... 120 5e-28
pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Coval... 115 9e-27
pdb|1MAB|B Chain B, Rat Liver F1-Atpase 115 1e-26
pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Coval... 115 1e-26
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (... 115 1e-26
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd (Dic... 114 2e-26
pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1... 105 2e-23
pdb|1RTP|1 Chain 1, Alpha-Parvalbumin >gi|494574|pdb|1RTP|2... 33 0.075
pdb|1G33|A Chain A, Crystal Structure Of Rat Parvalbumin Wi... 33 0.075
pdb|1G19|A Chain A, Structure Of Reca Protein >gi|12084113|... 32 0.13
pdb|1A6D|A Chain A, Thermosome From T. Acidophilum >gi|4699... 31 0.28
pdb|1MLA| Mol_id: 1; Molecule: Malonyl-Coenzyme A Acyl Ca... 30 0.82
pdb|1OSM|A Chain A, Osmoporin (Ompk36) From Klebsiella Pneu... 30 0.82
pdb|1IRE|B Chain B, Crystal Structure Of Co-Type Nitrile Hy... 28 3.1
pdb|190L| Mol_id: 1; Molecule: Lysozyme; Chain: Null; Ec:... 27 4.1
pdb|191L| Mol_id: 1; Molecule: Lysozyme; Chain: Null; Ec:... 27 4.1
pdb|2REC|A Chain A, Reca Hexamer Model, Electron Microscopy... 27 5.3
pdb|1G5G|A Chain A, Fragment Of Fusion Protein From Newcast... 27 5.3
pdb|2REB| The Structure Of The E. Coli Reca Protein Monom... 27 5.3
pdb|1EZM| Elastase (E.C.3.4.24.26) (Zinc Metalloprotease) 27 5.3
pdb|1STM|A Chain A, Satellite Panicum Mosaic Virus >gi|1942... 27 5.3
pdb|1LYH| Lysozyme Mutant With Cys 54 Replaced By Thr, Th... 27 7.0
pdb|1A8Y| Crystal Structure Of Calsequestrin From Rabbit ... 27 7.0
pdb|1QGI|A Chain A, Chitosanase From Bacillus Circulans 26 9.1
pdb|2DPM|A Chain A, Dpnm Dna Adenine Methyltransferase From... 26 9.1
>pdb|1SKY|B Chain B, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 502
Score = 620 bits (1600), Expect = e-179
Identities = 309/498 (62%), Positives = 396/498 (79%), Gaps = 2/498 (0%)
Query: 4 LKLEEISSVIEEKIKNFELDCDMAEVGKVVSYADGVAKVYGLNGVMSYEVLEFETGDKGV 63
++ EEIS++I+++I+N+E +++VG V+ DG+A+ +GL+ VMS E +EF G+
Sbjct: 3 IRAEEISALIKQQIENYESQIQVSDVGTVIQVGDGIARAHGLDNVMSGEAVEFANAVMGM 62
Query: 64 AANLEEDSVGVIVFGFGNNIKEGTSVKRTKSLMKVPVGDAVVGRVLNALGEPIDGKGEIE 123
A NLEE++VG+++ G IKEG V+RT +M+VPVG+ ++GRV+N LG+P+DG G +E
Sbjct: 63 ALNLEENNVGIVILGPYTGIKEGDEVRRTGRIMEVPVGETLIGRVVNPLGQPVDGLGPVE 122
Query: 124 TNEFSLIEQKAPGIMDRKSVHEPLQTGIKAIDALVPIGRGQRELIIGDKQTGKTTVAIDA 183
T E IE +APG+MDR+SVHEPLQTGIKAIDALVPIGRGQRELIIGD+QTGKT+VAID
Sbjct: 123 TTETRPIESRAPGVMDRRSVHEPLQTGIKAIDALVPIGRGQRELIIGDRQTGKTSVAIDT 182
Query: 184 IINQKGQNVICIYVAIGQKESTVAQVVRKLEEYGAMEYSVVINASASDSAAMQYLAPYSG 243
IINQK QN+ICIYVAIGQKESTVA VV L ++GA +Y++V+ ASAS A + +LAPY+G
Sbjct: 183 IINQKDQNMICIYVAIGQKESTVATVVETLAKHGAPDYTIVVTASASQPAPLLFLAPYAG 242
Query: 244 VAMGEYFRDHARHALIIYDDLSKHAVAYREISLILRRPPGREAFPGDVFYIHSRLLERAA 303
VAMGEYF +H L++ DDLSK A AYR++SL+LRRPPGREA+PGD+FY+HSRLLERAA
Sbjct: 243 VAMGEYFMIMGKHVLVVIDDLSKQAAAYRQLSLLLRRPPGREAYPGDIFYLHSRLLERAA 302
Query: 304 KLCDEKGAGSLTALPIVETQAGDVSAYIPTNIISITDGQIFLETDLFYSGIRPAINVGLS 363
KL D KG GSLTALP VETQAGD+SAYIPTN+ISITDGQIFL++DLF+SG+RPAIN GLS
Sbjct: 303 KLSDAKGGGSLTALPFVETQAGDISAYIPTNVISITDGQIFLQSDLFFSGVRPAINAGLS 362
Query: 364 VSRVGGAAQIKATKQVSGTLRLDLAQYRELQAFTQFASDLDEASKKQLERGQRMVEVLKQ 423
VSRVGGAAQIKA K+V+GTLRLDLA YREL+AF QF SDLD+A++ + RG R VEVLKQ
Sbjct: 363 VSRVGGAAQIKAMKKVAGTLRLDLAAYRELEAFAQFGSDLDKATQANVARGARTVEVLKQ 422
Query: 424 APYSPLPIEKQVVIIYAGAKGFLDSVSVKKVVDFEEQLHPFLEAKYPQVLEEIHTKKALD 483
+ P+P+EKQV+IIYA +GFLD + V+ V FE++ + +L+ +LE I T K L
Sbjct: 423 DLHQPIPVEKQVLIIYALTRGFLDDIPVEDVRRFEKEFYLWLDQNGQHLLEHIRTTKDLP 482
Query: 484 KDLEAMLRKVLEEFKLTY 501
E L + +E FK T+
Sbjct: 483 N--EDDLNQAIEAFKKTF 498
>pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
Length = 510
Score = 594 bits (1531), Expect = e-171
Identities = 297/498 (59%), Positives = 391/498 (77%), Gaps = 8/498 (1%)
Query: 8 EISSVIEEKIKNFELDCDMAEVGKVVSYADGVAKVYGLNGVMSYEVLEFETGDKGVAANL 67
E+SS++EE+I + D+ E G+V+S DG+A+V+GL V + E++EF +G KG++ NL
Sbjct: 7 EVSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNL 66
Query: 68 EEDSVGVIVFGFGNNIKEGTSVKRTKSLMKVPVGDAVVGRVLNALGEPIDGKGEIETNEF 127
E D+VGV+VFG IKEG VKRT +++ VPVG+ ++GRV++ALG IDGKG I +
Sbjct: 67 EPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKAR 126
Query: 128 SLIEQKAPGIMDRKSVHEPLQTGIKAIDALVPIGRGQRELIIGDKQTGKTTVAIDAIINQ 187
+ KAPGI+ R SV EP+QTGIKA+D+LVPIGRGQRELIIGD+QTGKT++AID IINQ
Sbjct: 127 RRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ 186
Query: 188 KGQN--------VICIYVAIGQKESTVAQVVRKLEEYGAMEYSVVINASASDSAAMQYLA 239
K N + CIYVAIGQK STVAQ+V++L + AM+Y++V++A+ASD+A +QYLA
Sbjct: 187 KRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLA 246
Query: 240 PYSGVAMGEYFRDHARHALIIYDDLSKHAVAYREISLILRRPPGREAFPGDVFYIHSRLL 299
PYSG +MGEYFRD+ +HALIIYDDLSK AVAYR++SL+LRRPPGREA+PGDVFY+HSRLL
Sbjct: 247 PYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLL 306
Query: 300 ERAAKLCDEKGAGSLTALPIVETQAGDVSAYIPTNIISITDGQIFLETDLFYSGIRPAIN 359
ERAAK+ D G GSLTALP++ETQAGDVSAYIPTN+ISITDGQIFLET+LFY GIRPAIN
Sbjct: 307 ERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAIN 366
Query: 360 VGLSVSRVGGAAQIKATKQVSGTLRLDLAQYRELQAFTQFASDLDEASKKQLERGQRMVE 419
VGLSVSRVG AAQ +A KQV+GT++L+LAQYRE+ AF QF SDLD A+++ L RG R+ E
Sbjct: 367 VGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTE 426
Query: 420 VLKQAPYSPLPIEKQVVIIYAGAKGFLDSVSVKKVVDFEEQLHPFLEAKYPQVLEEIHTK 479
+LKQ YSP+ IE+QV +IYAG +G+LD + K+ FE + +++ +L +I T
Sbjct: 427 LLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTD 486
Query: 480 KALDKDLEAMLRKVLEEF 497
+ ++ +A L++++ F
Sbjct: 487 GKISEESDAKLKEIVTNF 504
>pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|B Chain B, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|C Chain C, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E1R|C Chain C, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|C Chain C, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|C Chain C, Bovine Mitochondrial F1-Atpase
pdb|1H8H|C Chain C, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1NBM|C Chain C, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1H8E|C Chain C, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E1R|A Chain A, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|A Chain A, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|A Chain A, Bovine Mitochondrial F1-Atpase
pdb|1BMF|B Chain B, Bovine Mitochondrial F1-Atpase
pdb|1H8H|A Chain A, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1NBM|A Chain A, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|B Chain B, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1H8E|A Chain A, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|B Chain B, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E1R|B Chain B, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|B Chain B, Bovine Mitochondrial F1-Atpase At 100k
pdb|1H8H|B Chain B, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1QO1|C Chain C, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|A Chain A, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|B Chain B, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
Length = 510
Score = 594 bits (1531), Expect = e-171
Identities = 297/498 (59%), Positives = 391/498 (77%), Gaps = 8/498 (1%)
Query: 8 EISSVIEEKIKNFELDCDMAEVGKVVSYADGVAKVYGLNGVMSYEVLEFETGDKGVAANL 67
E+SS++EE+I + D+ E G+V+S DG+A+V+GL V + E++EF +G KG++ NL
Sbjct: 7 EVSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNL 66
Query: 68 EEDSVGVIVFGFGNNIKEGTSVKRTKSLMKVPVGDAVVGRVLNALGEPIDGKGEIETNEF 127
E D+VGV+VFG IKEG VKRT +++ VPVG+ ++GRV++ALG IDGKG I +
Sbjct: 67 EPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKAR 126
Query: 128 SLIEQKAPGIMDRKSVHEPLQTGIKAIDALVPIGRGQRELIIGDKQTGKTTVAIDAIINQ 187
+ KAPGI+ R SV EP+QTGIKA+D+LVPIGRGQRELIIGD+QTGKT++AID IINQ
Sbjct: 127 RRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ 186
Query: 188 KGQN--------VICIYVAIGQKESTVAQVVRKLEEYGAMEYSVVINASASDSAAMQYLA 239
K N + CIYVAIGQK STVAQ+V++L + AM+Y++V++A+ASD+A +QYLA
Sbjct: 187 KRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLA 246
Query: 240 PYSGVAMGEYFRDHARHALIIYDDLSKHAVAYREISLILRRPPGREAFPGDVFYIHSRLL 299
PYSG +MGEYFRD+ +HALIIYDDLSK AVAYR++SL+LRRPPGREA+PGDVFY+HSRLL
Sbjct: 247 PYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLL 306
Query: 300 ERAAKLCDEKGAGSLTALPIVETQAGDVSAYIPTNIISITDGQIFLETDLFYSGIRPAIN 359
ERAAK+ D G GSLTALP++ETQAGDVSAYIPTN+ISITDGQIFLET+LFY GIRPAIN
Sbjct: 307 ERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAIN 366
Query: 360 VGLSVSRVGGAAQIKATKQVSGTLRLDLAQYRELQAFTQFASDLDEASKKQLERGQRMVE 419
VGLSVSRVG AAQ +A KQV+GT++L+LAQYRE+ AF QF SDLD A+++ L RG R+ E
Sbjct: 367 VGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTE 426
Query: 420 VLKQAPYSPLPIEKQVVIIYAGAKGFLDSVSVKKVVDFEEQLHPFLEAKYPQVLEEIHTK 479
+LKQ YSP+ IE+QV +IYAG +G+LD + K+ FE + +++ +L +I T
Sbjct: 427 LLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTD 486
Query: 480 KALDKDLEAMLRKVLEEF 497
+ ++ +A L++++ F
Sbjct: 487 GKISEESDAKLKEIVTNF 504
>pdb|1MAB|A Chain A, Rat Liver F1-Atpase
Length = 510
Score = 593 bits (1530), Expect = e-170
Identities = 297/498 (59%), Positives = 389/498 (77%), Gaps = 8/498 (1%)
Query: 8 EISSVIEEKIKNFELDCDMAEVGKVVSYADGVAKVYGLNGVMSYEVLEFETGDKGVAANL 67
E+SS++EE+I + D+ E G+V+S DG+A+V+GL V + E++EF +G KG++ NL
Sbjct: 7 EMSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNL 66
Query: 68 EEDSVGVIVFGFGNNIKEGTSVKRTKSLMKVPVGDAVVGRVLNALGEPIDGKGEIETNEF 127
E D+VGV+VFG IKEG VKRT +++ VPVGD ++GRV++ALG IDGKG + +
Sbjct: 67 EPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGDELLGRVVDALGNAIDGKGPVGSKIR 126
Query: 128 SLIEQKAPGIMDRKSVHEPLQTGIKAIDALVPIGRGQRELIIGDKQTGKTTVAIDAIINQ 187
+ KAPGI+ R SV EP+QTGIKA+D+LVPIGRGQRELIIGD+QTGKT++AID IINQ
Sbjct: 127 RRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ 186
Query: 188 KGQN--------VICIYVAIGQKESTVAQVVRKLEEYGAMEYSVVINASASDSAAMQYLA 239
K N + CIYVAIGQK STVAQ+V++L + AM+Y++V++A+ASD+A +QYLA
Sbjct: 187 KRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLA 246
Query: 240 PYSGVAMGEYFRDHARHALIIYDDLSKHAVAYREISLILRRPPGREAFPGDVFYIHSRLL 299
PYSG +MGEYFRD+ +HALIIYDDLSK AVAYR++SL+LRRPPGREA+PGDVFY+HSRLL
Sbjct: 247 PYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLL 306
Query: 300 ERAAKLCDEKGAGSLTALPIVETQAGDVSAYIPTNIISITDGQIFLETDLFYSGIRPAIN 359
ERAAK+ D G GSLTALP++ETQAGDVSAYIPTN+ISITDGQIFLET+LFY GIRPAIN
Sbjct: 307 ERAAKMNDSFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAIN 366
Query: 360 VGLSVSRVGGAAQIKATKQVSGTLRLDLAQYRELQAFTQFASDLDEASKKQLERGQRMVE 419
VGLSVSRVG AAQ +A KQV+GT++L+LAQYRE+ AF QF SDLD A+++ L RG R+ E
Sbjct: 367 VGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTE 426
Query: 420 VLKQAPYSPLPIEKQVVIIYAGAKGFLDSVSVKKVVDFEEQLHPFLEAKYPQVLEEIHTK 479
+LKQ YSP+ IE+QV +IYAG +G+LD + K+ FE + +++ +L I T
Sbjct: 427 LLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFESAFLSHVVSQHQSLLGNIRTD 486
Query: 480 KALDKDLEAMLRKVLEEF 497
+ + +A L++++ F
Sbjct: 487 GKISEQSDAKLKEIVTNF 504
>pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|A Chain A, Crystal Structure Of Spinach Chloroplast F1-Atpase
Complexed With Tentoxin
Length = 507
Score = 587 bits (1514), Expect = e-169
Identities = 290/496 (58%), Positives = 386/496 (77%)
Query: 1 MSQLKLEEISSVIEEKIKNFELDCDMAEVGKVVSYADGVAKVYGLNGVMSYEVLEFETGD 60
M+ ++ +EIS +I E+I+ + + + G V+ DG+A+++GL+ VM+ E++EFE G
Sbjct: 1 MATIRADEISKIIRERIEGYNREVKVVNTGTVLQVGDGIARIHGLDEVMAGELVEFEEGT 60
Query: 61 KGVAANLEEDSVGVIVFGFGNNIKEGTSVKRTKSLMKVPVGDAVVGRVLNALGEPIDGKG 120
G+A NLE ++VGV++ G G I+EG+SVK T + ++PV +A +GRV+NAL +PIDG+G
Sbjct: 61 IGIALNLESNNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRG 120
Query: 121 EIETNEFSLIEQKAPGIMDRKSVHEPLQTGIKAIDALVPIGRGQRELIIGDKQTGKTTVA 180
EI +E LIE APGIM R+SV+EPLQTG+ AIDA++P+GRGQRELIIGD+QTGKT VA
Sbjct: 121 EITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAVA 180
Query: 181 IDAIINQKGQNVICIYVAIGQKESTVAQVVRKLEEYGAMEYSVVINASASDSAAMQYLAP 240
D I+NQ+GQNVIC+YVAIGQK S+VAQVV +E GAMEY++V+ +A A +QYLAP
Sbjct: 181 TDTILNQQGQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAP 240
Query: 241 YSGVAMGEYFRDHARHALIIYDDLSKHAVAYREISLILRRPPGREAFPGDVFYIHSRLLE 300
Y+G A+ EYF RH LIIYDDLSK A AYR++SL+LRRPPGREA+PGDVFY+HSRLLE
Sbjct: 241 YTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 300
Query: 301 RAAKLCDEKGAGSLTALPIVETQAGDVSAYIPTNIISITDGQIFLETDLFYSGIRPAINV 360
RAAKL G GS+TALPIVETQAGDVSAYIPTN+ISITDGQIFL DLF +GIRPAINV
Sbjct: 301 RAAKLSSLLGEGSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINV 360
Query: 361 GLSVSRVGGAAQIKATKQVSGTLRLDLAQYRELQAFTQFASDLDEASKKQLERGQRMVEV 420
G+SVSRVG AAQIKA K+V+G L+L+LAQ+ EL+AF QFASDLD+A++ QL RGQR+ E+
Sbjct: 361 GISVSRVGSAAQIKAMKKVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLREL 420
Query: 421 LKQAPYSPLPIEKQVVIIYAGAKGFLDSVSVKKVVDFEEQLHPFLEAKYPQVLEEIHTKK 480
LKQ +PL +E+QV+ IY G G+LDS+ + +V + +L +++ P+ E I + K
Sbjct: 421 LKQPQSAPLTVEEQVMTIYTGTNGYLDSLELDQVRKYLVELRTYVKTNKPEFQEIISSTK 480
Query: 481 ALDKDLEAMLRKVLEE 496
++ EA+L++ ++E
Sbjct: 481 TFTEEAEALLKEAIQE 496
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 120 bits (300), Expect = 5e-28
Identities = 96/367 (26%), Positives = 167/367 (45%), Gaps = 10/367 (2%)
Query: 63 VAANLEEDSVGVIVFGFGNNIKEGTSVKRTKSLMKVPVGDAVVGRVLNALGEPIDGKGEI 122
VA +L +D+V I + + G V T + + VPVG +GRV N LGEPID +G+I
Sbjct: 50 VALHLGDDTVRTIAMASTDGLIRGMEVIDTGAPISVPVGQVTLGRVFNVLGEPIDLEGDI 109
Query: 123 ETN-EFSLIEQKAPGIMDRKSVHEPLQTGIKAIDALVPIGRGQRELIIGDKQTGKTTVAI 181
+ I + AP + + E L+TGIK +D L P +G + + G GKT +
Sbjct: 110 PADARRDPIHRPAPKFEELATEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQ 169
Query: 182 DAIIN-QKGQNVICIYVAIGQKESTVAQVVRKLEEYGAMEYSVVINASASDSAAMQYLAP 240
+ I N + I ++ +G++ + ++++ G + + ++ ++ +
Sbjct: 170 ELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVA 229
Query: 241 YSGVAMGEYFRD-HARHALIIYDDLSKHAVAYREISLILRRPPGREAFPGDVFYIHSRLL 299
+G+ M EYFRD + L+ D++ + A E+S +L R P + + +L
Sbjct: 230 LTGLTMAEYFRDEQGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQ 289
Query: 300 ERAAKLCDEKGAGSLTALPIVETQAGDVSAYIPTNIISITDGQIFLETDLFYSGIRPAIN 359
ER GS+T++ + A D + P S D LE L GI PA++
Sbjct: 290 ERIT----STAKGSITSIQAIYVPADDYTDPAPATTFSHLDATTNLERKLAEMGIYPAVD 345
Query: 360 VGLSVSRVGGAAQI-KATKQVSGTLRLDLAQYRELQAFTQF--ASDLDEASKKQLERGQR 416
+S SR + + QV+ ++ L +Y+ELQ +L + K + R +R
Sbjct: 346 PLVSTSRALAPEIVGEEHYQVARKVQQTLERYKELQDIIAILGMDELSDEDKLVVHRARR 405
Query: 417 MVEVLKQ 423
+ L Q
Sbjct: 406 IQFFLSQ 412
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 115 bits (289), Expect = 9e-27
Identities = 104/445 (23%), Positives = 193/445 (43%), Gaps = 28/445 (6%)
Query: 63 VAANLEEDSVGVIVFGFGNNIKEGTSVKRTKSLMKVPVGDAVVGRVLNALGEPIDGKGEI 122
VA +L E +V I + G V + + +++PVG +GR++N +GEPID +G I
Sbjct: 53 VAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPI 112
Query: 123 ETNEFSLIEQKAPGIMDRKSVHEPLQTGIKAIDALVPIGRGQRELIIGDKQTGKTTVAID 182
+T +F+ I +AP ++ E L TGIK +D L P +G + + G GKT + ++
Sbjct: 113 KTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIME 172
Query: 183 AIIN-QKGQNVICIYVAIGQKESTVAQVVRKLEEYGAMEYS------VVINASASDSAAM 235
I N K ++ +G++ + ++ E G + ++ ++
Sbjct: 173 LINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGA 232
Query: 236 QYLAPYSGVAMGEYFRD-HARHALIIYDDLSKHAVAYREISLILRRPPGREAFPGDVFYI 294
+ +G+ + EYFRD + L+ D++ + A E+S +L R P + +
Sbjct: 233 RARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATD 292
Query: 295 HSRLLERAAKLCDEKGAGSLTALPIVETQAGDVSAYIPTNIISITDGQIFLETDLFYSGI 354
+ ER GS+T++ + A D++ P + D L + GI
Sbjct: 293 MGTMQERIT----TTKKGSITSVQAIXVPADDLTDPAPATTFAHLDATTVLSRAIAELGI 348
Query: 355 RPAINVGLSVSRVGGAAQIKATK-QVSGTLRLDLAQYRELQAFTQF--ASDLDEASKKQL 411
PA++ S SR+ + + V+ ++ L Y+ LQ +L E K +
Sbjct: 349 YPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTV 408
Query: 412 ERGQRMVEVLKQAPYSPLPIEKQVVIIYAGAKGFLDSVSVKKVVDFEEQLHPFLEAKYPQ 471
R +++ L Q P+ QV ++ G G L V +K+ + +Q+ L +Y
Sbjct: 409 SRARKIQRFLSQ-PF-------QVAEVFTGHLGKL--VPLKETIKGFQQI---LAGEYDH 455
Query: 472 VLEEIHTKKALDKDLEAMLRKVLEE 496
+ E+ ++ A K+ EE
Sbjct: 456 LPEQAFYMVGPIEEAVAKADKLAEE 480
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
Length = 479
Score = 115 bits (288), Expect = 1e-26
Identities = 105/445 (23%), Positives = 192/445 (42%), Gaps = 28/445 (6%)
Query: 63 VAANLEEDSVGVIVFGFGNNIKEGTSVKRTKSLMKVPVGDAVVGRVLNALGEPIDGKGEI 122
VA +L E +V I + G V + + +K+PVG +GR++N +GEPID +G I
Sbjct: 49 VAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPI 108
Query: 123 ETNEFSLIEQKAPGIMDRKSVHEPLQTGIKAIDALVPIGRGQRELIIGDKQTGKTTVAID 182
+T +F+ I +AP ++ E L TGIK +D L P +G + + G GKT + ++
Sbjct: 109 KTKQFAPIHAEAPEFIEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIME 168
Query: 183 AIIN-QKGQNVICIYVAIGQKESTVAQVVRKLEEYGAMEYS------VVINASASDSAAM 235
I N K ++ +G++ + ++ E G + ++ ++
Sbjct: 169 LINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGA 228
Query: 236 QYLAPYSGVAMGEYFRD-HARHALIIYDDLSKHAVAYREISLILRRPPGREAFPGDVFYI 294
+ +G+ + EYFRD + L+ D++ + A E+S +L R P + +
Sbjct: 229 RARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATD 288
Query: 295 HSRLLERAAKLCDEKGAGSLTALPIVETQAGDVSAYIPTNIISITDGQIFLETDLFYSGI 354
+ ER GS+T++ + A D++ P + D L + GI
Sbjct: 289 MGTMQERIT----TTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGI 344
Query: 355 RPAINVGLSVSRVGGAAQIKATK-QVSGTLRLDLAQYRELQAFTQF--ASDLDEASKKQL 411
PA++ S SR+ + + V+ ++ L Y+ LQ +L E K +
Sbjct: 345 YPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTV 404
Query: 412 ERGQRMVEVLKQAPYSPLPIEKQVVIIYAGAKGFLDSVSVKKVVDFEEQLHPFLEAKYPQ 471
R +++ L Q P+ QV ++ G G L V +K+ + +Q+ L Y
Sbjct: 405 SRARKIQRFLSQ-PF-------QVAEVFTGHMGKL--VPLKETIKGFQQI---LAGDYDH 451
Query: 472 VLEEIHTKKALDKDLEAMLRKVLEE 496
+ E+ ++ A K+ EE
Sbjct: 452 LPEQAFYMVGPIEEAVAKADKLAEE 476
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 115 bits (288), Expect = 1e-26
Identities = 104/445 (23%), Positives = 193/445 (43%), Gaps = 28/445 (6%)
Query: 63 VAANLEEDSVGVIVFGFGNNIKEGTSVKRTKSLMKVPVGDAVVGRVLNALGEPIDGKGEI 122
VA +L E +V I + G V + + +++PVG +GR++N +GEPID +G I
Sbjct: 53 VAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPI 112
Query: 123 ETNEFSLIEQKAPGIMDRKSVHEPLQTGIKAIDALVPIGRGQRELIIGDKQTGKTTVAID 182
+T +F+ I +AP ++ E L TGIK +D L P +G + + G GKT + ++
Sbjct: 113 KTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIME 172
Query: 183 AIIN-QKGQNVICIYVAIGQKESTVAQVVRKLEEYGAMEYS------VVINASASDSAAM 235
I N K ++ +G++ + ++ E G + ++ ++
Sbjct: 173 LINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGA 232
Query: 236 QYLAPYSGVAMGEYFRD-HARHALIIYDDLSKHAVAYREISLILRRPPGREAFPGDVFYI 294
+ +G+ + EYFRD + L+ D++ + A E+S +L R P + +
Sbjct: 233 RARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATD 292
Query: 295 HSRLLERAAKLCDEKGAGSLTALPIVETQAGDVSAYIPTNIISITDGQIFLETDLFYSGI 354
+ ER GS+T++ + A D++ P + D L + GI
Sbjct: 293 MGTMQERIT----TTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGI 348
Query: 355 RPAINVGLSVSRVGGAAQIKATK-QVSGTLRLDLAQYRELQAFTQF--ASDLDEASKKQL 411
PA++ S SR+ + + V+ ++ L Y+ LQ +L E K +
Sbjct: 349 YPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTV 408
Query: 412 ERGQRMVEVLKQAPYSPLPIEKQVVIIYAGAKGFLDSVSVKKVVDFEEQLHPFLEAKYPQ 471
R +++ L Q P+ QV ++ G G L V +K+ + +Q+ L +Y
Sbjct: 409 SRARKIQRFLSQ-PF-------QVAEVFTGHLGKL--VPLKETIKGFQQI---LAGEYDH 455
Query: 472 VLEEIHTKKALDKDLEAMLRKVLEE 496
+ E+ ++ A K+ EE
Sbjct: 456 LPEQAFYMVGPIEEAVAKADKLAEE 480
>pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
Length = 482
Score = 115 bits (288), Expect = 1e-26
Identities = 104/445 (23%), Positives = 193/445 (43%), Gaps = 28/445 (6%)
Query: 63 VAANLEEDSVGVIVFGFGNNIKEGTSVKRTKSLMKVPVGDAVVGRVLNALGEPIDGKGEI 122
VA +L E +V I + G V + + +++PVG +GR++N +GEPID +G I
Sbjct: 53 VAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPI 112
Query: 123 ETNEFSLIEQKAPGIMDRKSVHEPLQTGIKAIDALVPIGRGQRELIIGDKQTGKTTVAID 182
+T +F+ I +AP ++ E L TGIK +D L P +G + + G GKT + ++
Sbjct: 113 KTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIME 172
Query: 183 AIIN-QKGQNVICIYVAIGQKESTVAQVVRKLEEYGAMEYS------VVINASASDSAAM 235
I N K ++ +G++ + ++ E G + ++ ++
Sbjct: 173 LINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGA 232
Query: 236 QYLAPYSGVAMGEYFRD-HARHALIIYDDLSKHAVAYREISLILRRPPGREAFPGDVFYI 294
+ +G+ + EYFRD + L+ D++ + A E+S +L R P + +
Sbjct: 233 RARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATD 292
Query: 295 HSRLLERAAKLCDEKGAGSLTALPIVETQAGDVSAYIPTNIISITDGQIFLETDLFYSGI 354
+ ER GS+T++ + A D++ P + D L + GI
Sbjct: 293 MGTMQERIT----TTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGI 348
Query: 355 RPAINVGLSVSRVGGAAQIKATK-QVSGTLRLDLAQYRELQAFTQF--ASDLDEASKKQL 411
PA++ S SR+ + + V+ ++ L Y+ LQ +L E K +
Sbjct: 349 YPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTV 408
Query: 412 ERGQRMVEVLKQAPYSPLPIEKQVVIIYAGAKGFLDSVSVKKVVDFEEQLHPFLEAKYPQ 471
R +++ L Q P+ QV ++ G G L V +K+ + +Q+ L +Y
Sbjct: 409 SRARKIQRFLSQ-PF-------QVAEVFTGHLGKL--VPLKETIKGFQQI---LAGEYDH 455
Query: 472 VLEEIHTKKALDKDLEAMLRKVLEE 496
+ E+ ++ A K+ EE
Sbjct: 456 LPEQAFYMVGPIEEAVAKADKLAEE 480
>pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 114 bits (286), Expect = 2e-26
Identities = 104/445 (23%), Positives = 192/445 (42%), Gaps = 28/445 (6%)
Query: 63 VAANLEEDSVGVIVFGFGNNIKEGTSVKRTKSLMKVPVGDAVVGRVLNALGEPIDGKGEI 122
VA +L E +V I + G V + + +++PVG +GR++N +GEPID +G I
Sbjct: 53 VAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPI 112
Query: 123 ETNEFSLIEQKAPGIMDRKSVHEPLQTGIKAIDALVPIGRGQRELIIGDKQTGKTTVAID 182
+T +F+ I +AP ++ E L TGIK +D L P +G + + G GKT + ++
Sbjct: 113 KTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIME 172
Query: 183 AIIN-QKGQNVICIYVAIGQKESTVAQVVRKLEEYGAMEYS------VVINASASDSAAM 235
I N K ++ +G++ + + E G + ++ ++
Sbjct: 173 LINNVAKAHGGYSVFAGVGERTREGNDLYHXMIESGVINLKDATSKVALVYGQMNEPPGA 232
Query: 236 QYLAPYSGVAMGEYFRD-HARHALIIYDDLSKHAVAYREISLILRRPPGREAFPGDVFYI 294
+ +G+ + EYFRD + L+ D++ + A E+S +L R P + +
Sbjct: 233 RARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATD 292
Query: 295 HSRLLERAAKLCDEKGAGSLTALPIVETQAGDVSAYIPTNIISITDGQIFLETDLFYSGI 354
+ ER GS+T++ + A D++ P + D L + GI
Sbjct: 293 MGTMQERIT----TTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGI 348
Query: 355 RPAINVGLSVSRVGGAAQIKATK-QVSGTLRLDLAQYRELQAFTQF--ASDLDEASKKQL 411
PA++ S SR+ + + V+ ++ L Y+ LQ +L E K +
Sbjct: 349 YPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTV 408
Query: 412 ERGQRMVEVLKQAPYSPLPIEKQVVIIYAGAKGFLDSVSVKKVVDFEEQLHPFLEAKYPQ 471
R +++ L Q P+ QV ++ G G L V +K+ + +Q+ L +Y
Sbjct: 409 SRARKIQRFLSQ-PF-------QVAEVFTGHLGKL--VPLKETIKGFQQI---LAGEYDH 455
Query: 472 VLEEIHTKKALDKDLEAMLRKVLEE 496
+ E+ ++ A K+ EE
Sbjct: 456 LPEQAFYMVGPIEEAVAKADKLAEE 480
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-Atpase
Complexed With Tentoxin
Length = 498
Score = 105 bits (261), Expect = 2e-23
Identities = 102/454 (22%), Positives = 187/454 (40%), Gaps = 52/454 (11%)
Query: 67 LEEDSVGVIVFGFGNNIKEGTSVKRTKSLMKVPVGDAVVGRVLNALGEPIDGKGEIETNE 126
L + V + + + G V T + + VPVG +GR+ N LGEP+D ++T
Sbjct: 69 LGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGPTLGRIFNVLGEPVDNLRPVDTRT 128
Query: 127 FSLIEQKAPGIMDRKSVHEPLQTGIKAIDALVPIGRGQRELIIGDKQTGKTTVAIDAIIN 186
S I + AP + +TGIK ++ L P RG + + G GKT + ++ I N
Sbjct: 129 TSPIHRSAPAFTQLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINN 188
Query: 187 -QKGQNVICIYVAIGQKESTVAQVVRKLEEYGAMEYS-------VVINASASDSAAMQYL 238
K + ++ +G++ + +++E G + ++ ++ +
Sbjct: 189 IAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMR 248
Query: 239 APYSGVAMGEYFRD-HARHALIIYDDLSKHAVAYREISLILRRPPGREAFPGDVFYIHSR 297
+ + M EYFRD + + L+ D++ + A E+S +L R P + +
Sbjct: 249 VGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGS 308
Query: 298 LLERAAKLCDEKGAGSLTALPIVETQAGDVSAYIPTNIISITDGQIFLETDLFYSGIRPA 357
L ER + GS+T++ V A D++ P + D L L GI PA
Sbjct: 309 LQERITSTKE----GSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPA 364
Query: 358 INVGLSVS-----RVGGAAQIKATKQVSGTLRLDLAQYRELQAFTQF--ASDLDEASKKQ 410
++ S S R+ G + ++V TL+ +Y+ELQ +L E +
Sbjct: 365 VDPLDSTSTMLQPRIVGEEHYEIAQRVKETLQ----RYKELQDIIAILGLDELSEEDRLT 420
Query: 411 LERGQRMVEVLKQAPYSPLPIEKQVVIIYAGAKGFLDSVSVKKVVDFEEQLHPF---LEA 467
+ R +++ L Q + V ++ G+ G K V E + F L
Sbjct: 421 VARARKIERFLSQPFF--------VAEVFTGSPG--------KYVGLAETIRGFQLILSG 464
Query: 468 KYPQVLEEIH---------TKKALDKDLEAMLRK 492
+ + E+ T KA++ ++E+ L+K
Sbjct: 465 ELDSLPEQAFYLVGNIDEATAKAMNLEMESKLKK 498
>pdb|1RTP|1 Chain 1, Alpha-Parvalbumin
pdb|1RTP|2 Chain 2, Alpha-Parvalbumin
pdb|1RTP|3 Chain 3, Alpha-Parvalbumin
Length = 109
Score = 33.1 bits (74), Expect = 0.075
Identities = 25/75 (33%), Positives = 36/75 (47%), Gaps = 16/75 (21%)
Query: 56 FETGDKGVAANLEEDSVGVIVFGFGNNIKEGTSVKRTKSLMKVPVGDAVVGRVLNALGEP 115
F DK + +EED +G I+ GF ++ ++ S K TK+LM GD
Sbjct: 47 FHILDKDKSGFIEEDELGSILKGFSSDARD-LSAKETKTLM--AAGDK------------ 91
Query: 116 IDGKGEIETNEFSLI 130
DG G+I EFS +
Sbjct: 92 -DGDGKIGVEEFSTL 105
>pdb|1G33|A Chain A, Crystal Structure Of Rat Parvalbumin Without The
N-Terminal Domain
Length = 73
Score = 33.1 bits (74), Expect = 0.075
Identities = 25/75 (33%), Positives = 36/75 (47%), Gaps = 16/75 (21%)
Query: 56 FETGDKGVAANLEEDSVGVIVFGFGNNIKEGTSVKRTKSLMKVPVGDAVVGRVLNALGEP 115
F DK + +EED +G I+ GF ++ ++ S K TK+LM GD
Sbjct: 11 FHILDKDKSGFIEEDELGSILKGFSSDARD-LSAKETKTLM--AAGDK------------ 55
Query: 116 IDGKGEIETNEFSLI 130
DG G+I EFS +
Sbjct: 56 -DGDGKIGVEEFSTL 69
>pdb|1G19|A Chain A, Structure Of Reca Protein
pdb|1G18|A Chain A, Reca-Adp-Alf4 Complex
Length = 350
Score = 32.3 bits (72), Expect = 0.13
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 147 LQTGIKAIDALVPIG---RGQRELIIGDKQTGKTTVAIDAIINQKGQNVICIYV 197
+ TG A+D + IG RG+ I G + +GKTTVA+ A+ N + + ++
Sbjct: 41 IPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFI 94
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome - Mg-Adp-Alf3 Complex
Length = 545
Score = 31.2 bits (69), Expect = 0.28
Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 28/147 (19%)
Query: 104 VVGRVLNALGEPIDGKGEIETNEFSLIEQKAPG-----------IMDRKSVHEPLQTGIK 152
+V + +NA+ E DGK ++T +++K G ++D++ VH + +K
Sbjct: 174 LVVKAVNAVAEVRDGKTIVDTANIK-VDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVK 232
Query: 153 AIDALVPIGRGQRELIIGDKQTGKTTVAIDAIINQKGQNVICIYVAIGQKESTVAQVVRK 212
+ LI + KT + I+ + I + Q+ +T Q+V K
Sbjct: 233 ---------NAKIALIDSALEIKKTEIEAKVQISDPSK----IQDFLNQETNTFKQMVEK 279
Query: 213 LEEYGAMEYSVVINASASDSAAMQYLA 239
+++ GA +VV+ D A YLA
Sbjct: 280 IKKSGA---NVVLCQKGIDDVAQHYLA 303
>pdb|1MLA| Mol_id: 1; Molecule: Malonyl-Coenzyme A Acyl Carrier Protein
Transacylase; Chain: Null; Synonym: Malonyl-Coa Acp
Transacylase; Engineered: Yes
Length = 309
Score = 29.6 bits (65), Expect = 0.82
Identities = 32/107 (29%), Positives = 44/107 (40%), Gaps = 14/107 (13%)
Query: 220 EYSVVINASASDSAAMQYLAPYSGVAMGEYFRDH--ARHALIIYDDLS-----KHAVAYR 272
EYS ++ A D A L G M E + A A+I DD S + A +
Sbjct: 95 EYSALVCAGVIDFADAVRLVEMRGKFMQEAVPEGTGAMAAIIGLDDASIAKACEEAAEGQ 154
Query: 273 EISLILRRPPGREAFPGDVFYIHSRLLERAAKLCDEKGAGSLTALPI 319
+S + PG+ G H +ERA C K AG+ ALP+
Sbjct: 155 VVSPVNFNSPGQVVIAG-----HKEAVERAGAAC--KAAGAKRALPL 194
>pdb|1OSM|A Chain A, Osmoporin (Ompk36) From Klebsiella Pneumoniae
pdb|1OSM|B Chain B, Osmoporin (Ompk36) From Klebsiella Pneumoniae
pdb|1OSM|C Chain C, Osmoporin (Ompk36) From Klebsiella Pneumoniae
Length = 342
Score = 29.6 bits (65), Expect = 0.82
Identities = 20/68 (29%), Positives = 34/68 (49%), Gaps = 3/68 (4%)
Query: 196 YVAIGQKESTVAQVVRKLEEYGAMEYSVVINASASDSAAMQYLAPYSGVAMGEYFR-DHA 254
Y+ +G K T Q+ +L YG EY+V N + S S ++G+ G+ D+
Sbjct: 35 YMRLGVKGET--QINDQLTGYGQWEYNVQANNTESSSDQAWTRLAFAGLKFGDAGSFDYG 92
Query: 255 RHALIIYD 262
R+ ++YD
Sbjct: 93 RNYGVVYD 100
>pdb|1IRE|B Chain B, Crystal Structure Of Co-Type Nitrile Hydratase From
Pseudonocardia Thermophila
Length = 228
Score = 27.7 bits (60), Expect = 3.1
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 382 TLRLDLAQYRELQAFTQFASDLDEASKKQLERGQRMVEVLKQAPYSPLPIEKQV 435
T ++DL EL+ TQ+ + +A + E+ ++E + QA Y LP ++V
Sbjct: 83 TGKIDL---EELERRTQYYRENPDAPLPEHEQKPELIEFVNQAVYGGLPASREV 133
>pdb|190L| Mol_id: 1; Molecule: Lysozyme; Chain: Null; Ec: 3.2.1.17;
Engineered: Yes; Mutation: N53a, N55a, V57a
Length = 164
Score = 27.3 bits (59), Expect = 4.1
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 60 DKGVAANLEEDSVGVIVFGFGNNIKEGTSVKRTKSLMKVPVGDAVVGRV 108
D+G+ + +D+ G G G+ + + S+ KS + +G A G +
Sbjct: 10 DEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRACAGAI 58
>pdb|191L| Mol_id: 1; Molecule: Lysozyme; Chain: Null; Ec: 3.2.1.17;
Engineered: Yes; Mutation: N53a, N55a, V57a, E128a,
V131a, N132a
Length = 164
Score = 27.3 bits (59), Expect = 4.1
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 60 DKGVAANLEEDSVGVIVFGFGNNIKEGTSVKRTKSLMKVPVGDAVVGRV 108
D+G+ + +D+ G G G+ + + S+ KS + +G A G +
Sbjct: 10 DEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRACAGAI 58
>pdb|2REC|A Chain A, Reca Hexamer Model, Electron Microscopy
pdb|2REC|B Chain B, Reca Hexamer Model, Electron Microscopy
pdb|2REC|C Chain C, Reca Hexamer Model, Electron Microscopy
pdb|2REC|D Chain D, Reca Hexamer Model, Electron Microscopy
pdb|2REC|E Chain E, Reca Hexamer Model, Electron Microscopy
pdb|2REC|F Chain F, Reca Hexamer Model, Electron Microscopy
Length = 353
Score = 26.9 bits (58), Expect = 5.3
Identities = 16/62 (25%), Positives = 29/62 (45%), Gaps = 3/62 (4%)
Query: 139 DRKSVHEPLQTGIKAIDALVPIG---RGQRELIIGDKQTGKTTVAIDAIINQKGQNVICI 195
DR E + TG ++D + G G+ I G + +GKTT+ + I + + C
Sbjct: 33 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCA 92
Query: 196 YV 197
++
Sbjct: 93 FI 94
>pdb|1G5G|A Chain A, Fragment Of Fusion Protein From Newcastle Disease Virus
pdb|1G5G|B Chain B, Fragment Of Fusion Protein From Newcastle Disease Virus
pdb|1G5G|C Chain C, Fragment Of Fusion Protein From Newcastle Disease Virus
pdb|1G5G|D Chain D, Fragment Of Fusion Protein From Newcastle Disease Virus
pdb|1G5G|E Chain E, Fragment Of Fusion Protein From Newcastle Disease Virus
pdb|1G5G|F Chain F, Fragment Of Fusion Protein From Newcastle Disease Virus
Length = 481
Score = 26.9 bits (58), Expect = 5.3
Identities = 12/50 (24%), Positives = 26/50 (52%)
Query: 445 FLDSVSVKKVVDFEEQLHPFLEAKYPQVLEEIHTKKALDKDLEAMLRKVL 494
+L+++SV F L P + + V+EE+ T ++ DL+ +++
Sbjct: 271 YLETLSVSTTKGFASALVPKVVTQVGSVIEELDTSYCIETDLDLYCTRIV 320
>pdb|2REB| The Structure Of The E. Coli Reca Protein Monomer And Polymer
pdb|1REA| Structure Of The Reca Protein-Adp Complex
Length = 352
Score = 26.9 bits (58), Expect = 5.3
Identities = 16/62 (25%), Positives = 29/62 (45%), Gaps = 3/62 (4%)
Query: 139 DRKSVHEPLQTGIKAIDALVPIG---RGQRELIIGDKQTGKTTVAIDAIINQKGQNVICI 195
DR E + TG ++D + G G+ I G + +GKTT+ + I + + C
Sbjct: 32 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCA 91
Query: 196 YV 197
++
Sbjct: 92 FI 93
>pdb|1EZM| Elastase (E.C.3.4.24.26) (Zinc Metalloprotease)
Length = 301
Score = 26.9 bits (58), Expect = 5.3
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 34 SYADGVAKVYGLNGVMSYEVLEFETGDKGVAANLEEDSVGVIVFGFGNNIKEGTS 88
+Y DG A ++G M Y ++ + V+ E + G+I G + E S
Sbjct: 113 AYWDGTAMLFGDGATMFYPLVSLDVAAHEVSHGFTEQNSGLIYRGQSGGMNEAFS 167
>pdb|1STM|A Chain A, Satellite Panicum Mosaic Virus
pdb|1STM|B Chain B, Satellite Panicum Mosaic Virus
pdb|1STM|C Chain C, Satellite Panicum Mosaic Virus
pdb|1STM|D Chain D, Satellite Panicum Mosaic Virus
pdb|1STM|E Chain E, Satellite Panicum Mosaic Virus
Length = 157
Score = 26.9 bits (58), Expect = 5.3
Identities = 17/58 (29%), Positives = 28/58 (47%), Gaps = 8/58 (13%)
Query: 139 DRKSVHEPLQTGIKAIDALVPIGR-----GQRELIIGDKQTGKTTVAIDAIINQKGQN 191
D SVH TG++ + + R GQ G+ + +T +AID +++ KG N
Sbjct: 81 DTDSVHA---TGVQLMGTVPRTVRLTPRVGQNNWFFGNTEEAETILAIDGLVSTKGAN 135
>pdb|1LYH| Lysozyme Mutant With Cys 54 Replaced By Thr, Thr 59 Replaced By
Gly, Cys 97 Replaced By Ala (C54t,T59g,C97a)
Length = 164
Score = 26.6 bits (57), Expect = 7.0
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 60 DKGVAANLEEDSVGVIVFGFGNNIKEGTSVKRTKSLMKVPVGDAVVGRVLNALGEPIDGK 119
D+G+ + +D+ G G G+ + + S+ KS + D +GR N + GK
Sbjct: 10 DEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSEL-----DKAIGRNTNG----VIGK 60
Query: 120 GEIETNEFSLIEQKAPGIMDRKSVHEPLQTGIKAI 154
E E ++ GI+ R + +P+ + A+
Sbjct: 61 DEAEKLFNQDVDAAVRGIL-RNAKLKPVYDSLDAV 94
>pdb|1A8Y| Crystal Structure Of Calsequestrin From Rabbit Skeletal Muscle
Sarcoplasmic Reticulum At 2.4 A Resolution
Length = 367
Score = 26.6 bits (57), Expect = 7.0
Identities = 12/42 (28%), Positives = 22/42 (51%)
Query: 271 YREISLILRRPPGREAFPGDVFYIHSRLLERAAKLCDEKGAG 312
Y ++L+ PP + F + +LE AA++ ++KG G
Sbjct: 30 YEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVG 71
>pdb|1QGI|A Chain A, Chitosanase From Bacillus Circulans
Length = 259
Score = 26.2 bits (56), Expect = 9.1
Identities = 14/39 (35%), Positives = 20/39 (50%), Gaps = 3/39 (7%)
Query: 36 ADGVAKVYGLNGVMSYEVLEFETGDK---GVAANLEEDS 71
ADG K G+NG M +LE + +K G L+ D+
Sbjct: 96 ADGALKRLGINGKMKGSILEIKDSEKVFCGKIKKLQNDA 134
>pdb|2DPM|A Chain A, Dpnm Dna Adenine Methyltransferase From Streptoccocus
Pneumoniae Complexed With S-Adenosylmethionine
Length = 284
Score = 26.2 bits (56), Expect = 9.1
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 182 DAIINQKGQNVICIYVAIGQKESTVAQVVRKLEEYGAMEYSVVINASASD 231
DA+IN +I Y I + ++++ +EY + EY + + ++ D
Sbjct: 57 DAVINDFNAELINCYQQIKDNPQELIEILKVHQEYNSKEYYLDLRSADRD 106
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.135 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,664,524
Number of Sequences: 13198
Number of extensions: 111593
Number of successful extensions: 629
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 592
Number of HSP's gapped (non-prelim): 30
length of query: 503
length of database: 2,899,336
effective HSP length: 92
effective length of query: 411
effective length of database: 1,685,120
effective search space: 692584320
effective search space used: 692584320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)