BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645749|ref|NP_207926.1| ATP synthase F1, subunit
delta (atpH) [Helicobacter pylori 26695]
         (180 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1MHY|G  Chain G, Methane Monooxygenase Hydroxylase >gi|2...    27  1.8
pdb|1DUS|A  Chain A, Mj0882-A Hypothetical Protein From M. J...    25  6.8
pdb|1GHQ|A  Chain A, Cr2-C3d Complex Structure                     25  6.8
pdb|1C3D|    X-Ray Crystal Structure Of C3d: A C3 Fragment A...    25  6.8

>pdb|1MHY|G Chain G, Methane Monooxygenase Hydroxylase
 pdb|1MHZ|G Chain G, Methane Monooxygenase Hydroxylase
          Length = 169

 Score = 26.6 bits (57), Expect = 1.8
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 84  VLKNNRLDMLELITEELSFDSKRTLEATLLVPEKLENN--ELEAVQQKLQARFNAPV 138
           VLK  +L + +LIT+  + +    +EAT +   K   +  E EA+  + +  +  PV
Sbjct: 67  VLKTEKLPVADLITKATTGEDAAAVEATWIAKIKAAKSKYEAEAIHIEFRQLYKPPV 123



>pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannaschii
          Length = 194

 Score = 24.6 bits (52), Expect = 6.8
 Identities = 14/61 (22%), Positives = 31/61 (49%)

Query: 7   ISKHYAKALKNHTKSDLALLEEIVVGLKNATEAIRQHKLNQVLAHVSLKVKKEVVFEILE 66
           I++   K  K + K +     +I V   +  E ++  K N+++ +  ++  KEV+  I+E
Sbjct: 82  INRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPPIRAGKEVLHRIIE 141

Query: 67  K 67
           +
Sbjct: 142 E 142



>pdb|1GHQ|A Chain A, Cr2-C3d Complex Structure
          Length = 308

 Score = 24.6 bits (52), Expect = 6.8
 Identities = 10/37 (27%), Positives = 21/37 (56%)

Query: 2   QDLKVISKHYAKALKNHTKSDLALLEEIVVGLKNATE 38
           +D  VI +     L+N+ + D+AL   +++ L+ A +
Sbjct: 127 EDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKD 163



>pdb|1C3D|   X-Ray Crystal Structure Of C3d: A C3 Fragment And Ligand For
           Complement Receptor 2
          Length = 294

 Score = 24.6 bits (52), Expect = 6.8
 Identities = 10/37 (27%), Positives = 21/37 (56%)

Query: 2   QDLKVISKHYAKALKNHTKSDLALLEEIVVGLKNATE 38
           +D  VI +     L+N+ + D+AL   +++ L+ A +
Sbjct: 127 EDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKD 163



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.313    0.130    0.332 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 839,231
Number of Sequences: 13198
Number of extensions: 28577
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83
Number of HSP's gapped (non-prelim): 5
length of query: 180
length of database: 2,899,336
effective HSP length: 82
effective length of query: 98
effective length of database: 1,817,100
effective search space: 178075800
effective search space used: 178075800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)