BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645750|ref|NP_207927.1| ATP synthase F0, subunit b
(atpF) [Helicobacter pylori 26695]
(171 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 33 0.013
pdb|1KGE| Structure Of Beta-Lactamase Asn 170 Met Mutant 30 0.15
pdb|1KGF| Structure Of Beta-Lactamase Asn 170 Gln Mutant 30 0.19
pdb|1GHP|A Chain A, Structures Of The Acyl-Enzyme Complex O... 30 0.19
pdb|1A6F| Rnase P Protein From Bacillus Subtilis 29 0.25
pdb|1BLP| Beta-Lactamase (E.C.3.5.2.6) P54 Mutant With As... 29 0.25
pdb|1KGG|A Chain A, Structure Of Beta-Lactamase Glu166gln:a... 29 0.33
pdb|1DJC| Structure Of Beta-Lactamase Precursor, S70a Mut... 29 0.33
pdb|1PIO|A Chain A, Mol_id: 1; Molecule: Beta-Lactamase; Ch... 29 0.33
pdb|1A76| Flap Endonuclease-1 From Methanococcus Jannasch... 29 0.33
pdb|1DJA| Structure Of Beta-Lactamase Precursor, K73h Mut... 29 0.33
pdb|3BLM| Beta-Lactamase (E.C.3.5.2.6) >gi|493890|pdb|1BL... 29 0.33
pdb|1ALQ| Circularly Permuted Beta-Lactamase From Staphyl... 29 0.33
pdb|1H6K|C Chain C, Nuclear Cap Binding Complex >gi|1598838... 28 0.43
pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s ... 28 0.43
pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Bind... 28 0.43
pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a 28 0.73
pdb|1OME|A Chain A, Crystal Structure Of The Omega Loop Del... 27 0.96
pdb|1DN1|B Chain B, Crystal Structure Of The Neuronal-Sec1S... 27 0.96
pdb|1BR0|A Chain A, Three Dimensional Structure Of The N-Te... 27 0.96
pdb|1EZ3|A Chain A, Crystal Structure Of The Neuronal T-Sna... 27 0.96
pdb|1F4K|A Chain A, Crystal Structure Of The Replication Te... 27 1.6
pdb|1I6Z|A Chain A, Bag Domain Of Bag1 Cochaperone 26 2.1
pdb|1BM9|A Chain A, Replication Terminator Protein From Bac... 26 2.1
pdb|1MC8|A Chain A, Crystal Structure Of Flap Endonuclease-... 26 2.8
pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolip... 26 2.8
pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v 26 2.8
pdb|1HU3|A Chain A, Middle Domain Of Human Eif4gii 26 2.8
pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junct... 26 2.8
pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant 26 2.8
pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant 26 2.8
pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant 26 2.8
pdb|1B43|A Chain A, Fen-1 From P. Furiosus >gi|6980605|pdb|... 25 3.6
pdb|1G8X|A Chain A, Structure Of A Genetically Engineered M... 25 3.6
pdb|1K23|C Chain C, Inorganic Pyrophosphatase (Family Ii) F... 25 4.7
pdb|1HJO|A Chain A, Heat-Shock 70kd Protein 42kd Atpase N-T... 25 4.7
pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 25 6.2
pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomeras... 25 6.2
pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 25 6.2
pdb|1JFK|A Chain A, Minimum Energy Representative Structure... 25 6.2
pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exc... 24 8.1
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 33.5 bits (75), Expect = 0.013
Identities = 23/106 (21%), Positives = 53/106 (49%), Gaps = 8/106 (7%)
Query: 49 KKLRSFLRSKSLEISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANK----- 103
+K++ L +S ++ +++ E+QAQ+ K K +EL+ A + E S N
Sbjct: 1059 EKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKI 1118
Query: 104 ---EAYMITQKYELQTKMDVENLIKNSKALMDLEVKKIKRELVESV 146
E+++ + +L+++ N + K + E++ +K EL +++
Sbjct: 1119 RELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTL 1164
Score = 28.5 bits (62), Expect = 0.43
Identities = 16/88 (18%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 61 EISKRLEEIQAQLKVSKENKKKLLKE----LEQAKEKAELIVSDANK-EAYMITQKYELQ 115
E+ EE++ +L K+ +++L E +E+ +E+++ + ++ K + M+ + +L+
Sbjct: 906 ELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLE 965
Query: 116 TKMDVENLIKNSKALMDLEVKKIKRELV 143
+ ++ K D ++KK++ +++
Sbjct: 966 EEEAARQKLQLEKVTADGKIKKMEDDIL 993
Score = 28.1 bits (61), Expect = 0.56
Identities = 27/85 (31%), Positives = 42/85 (48%), Gaps = 11/85 (12%)
Query: 68 EIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYELQTKMDVENLIKNS 127
++ + K+ +E L L + +EKA+ + NK MI+ EL+ + L K
Sbjct: 1001 KLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMIS---ELEVR-----LKKEE 1052
Query: 128 KALMDLEVKKIKRELVESVFKDLRE 152
K+ +LE KIKR+L E DL E
Sbjct: 1053 KSRQELE--KIKRKL-EGESSDLHE 1074
>pdb|1KGE| Structure Of Beta-Lactamase Asn 170 Met Mutant
Length = 258
Score = 30.0 bits (66), Expect = 0.15
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 43 LWYFSAKKLRSFLRSKSLEISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDAN 102
L Y+S K + S K L ++ A K+SKENKK LL +L + + ++ D
Sbjct: 137 LMYYSPKSKKD--TSTPAAFGKTLNKLIANGKLSKENKKFLL-DLMLNNKSGDTLIKDGV 193
Query: 103 KEAYMITQK 111
+ Y + K
Sbjct: 194 PKDYKVADK 202
>pdb|1KGF| Structure Of Beta-Lactamase Asn 170 Gln Mutant
Length = 258
Score = 29.6 bits (65), Expect = 0.19
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 43 LWYFSAKKLRSFLRSKSLEISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDAN 102
L Y+S K + S K L ++ A K+SKENKK LL +L + + ++ D
Sbjct: 137 LQYYSPKSKKD--TSTPAAFGKTLNKLIANGKLSKENKKFLL-DLMLNNKSGDTLIKDGV 193
Query: 103 KEAYMITQK 111
+ Y + K
Sbjct: 194 PKDYKVADK 202
>pdb|1GHP|A Chain A, Structures Of The Acyl-Enzyme Complex Of The
Staphylococcus Aureus Beta-Lactamase Mutant
Glu166asp:asn170gln With Degraded Benzylpenicillin
pdb|1GHM|A Chain A, Structures Of The Acyl-Enzyme Complex Of The
Staphylococcus Aureus Beta-Lactamase Mutant
Glu166asp:asn170gln With Degraded Cephaloridine
pdb|1GHI|A Chain A, Structure Of Beta-Lactamase Glu166asp:asn170gln Mutant
Length = 258
Score = 29.6 bits (65), Expect = 0.19
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 43 LWYFSAKKLRSFLRSKSLEISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDAN 102
L Y+S K + S K L ++ A K+SKENKK LL +L + + ++ D
Sbjct: 137 LQYYSPKSKKD--TSTPAAFGKTLNKLIANGKLSKENKKFLL-DLMLNNKSGDTLIKDGV 193
Query: 103 KEAYMITQK 111
+ Y + K
Sbjct: 194 PKDYKVADK 202
>pdb|1A6F| Rnase P Protein From Bacillus Subtilis
Length = 119
Score = 29.3 bits (64), Expect = 0.25
Identities = 20/68 (29%), Positives = 39/68 (56%), Gaps = 5/68 (7%)
Query: 60 LEISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYELQTKMD 119
L +SK++ + ++ + ++ L+E E+ KEK +I+ A K A +T YE +TK
Sbjct: 48 LSVSKKIGNAVMRNRIKRLIRQAFLEEKERLKEKDYIII--ARKPASQLT--YE-ETKKS 102
Query: 120 VENLIKNS 127
+++L + S
Sbjct: 103 LQHLFRKS 110
>pdb|1BLP| Beta-Lactamase (E.C.3.5.2.6) P54 Mutant With Asp 179 Replaced By
Asn (D179n)
Length = 257
Score = 29.3 bits (64), Expect = 0.25
Identities = 20/67 (29%), Positives = 33/67 (48%), Gaps = 3/67 (4%)
Query: 45 YFSAKKLRSFLRSKSLEISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKE 104
Y+S K ++ S K L ++ A K+SKENKK LL +L + + ++ D +
Sbjct: 138 YYSPKSKKN--TSTPAAFGKTLNKLIANGKLSKENKKFLL-DLMLNNKSGDTLIKDGVPK 194
Query: 105 AYMITQK 111
Y + K
Sbjct: 195 DYKVADK 201
>pdb|1KGG|A Chain A, Structure Of Beta-Lactamase Glu166gln:asn170asp Mutant
Length = 258
Score = 28.9 bits (63), Expect = 0.33
Identities = 20/67 (29%), Positives = 32/67 (46%), Gaps = 3/67 (4%)
Query: 45 YFSAKKLRSFLRSKSLEISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKE 104
Y+S K + S K L ++ A K+SKENKK LL +L + + ++ D +
Sbjct: 139 YYSPKSKKD--TSTPAAFGKTLNKLIANGKLSKENKKFLL-DLMLNNKSGDTLIKDGVPK 195
Query: 105 AYMITQK 111
Y + K
Sbjct: 196 DYKVADK 202
>pdb|1DJC| Structure Of Beta-Lactamase Precursor, S70a Mutant, At 120k
pdb|1DJB| Structure Of Beta-Lactamase Precursor, S70a Mutant, At 298k
Length = 257
Score = 28.9 bits (63), Expect = 0.33
Identities = 20/67 (29%), Positives = 32/67 (46%), Gaps = 3/67 (4%)
Query: 45 YFSAKKLRSFLRSKSLEISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKE 104
Y+S K + S K L ++ A K+SKENKK LL +L + + ++ D +
Sbjct: 138 YYSPKSKKD--TSTPAAFGKTLNKLIANGKLSKENKKFLL-DLMLNNKSGDTLIKDGVPK 194
Query: 105 AYMITQK 111
Y + K
Sbjct: 195 DYKVADK 201
>pdb|1PIO|A Chain A, Mol_id: 1; Molecule: Beta-Lactamase; Chain: A, B; Synonym:
Penicillinase; Ec: 3.5.2.6; Engineered: Yes; Mutation:
Ins(Met 30), A238s, Del(I239)
pdb|1PIO|B Chain B, Mol_id: 1; Molecule: Beta-Lactamase; Chain: A, B; Synonym:
Penicillinase; Ec: 3.5.2.6; Engineered: Yes; Mutation:
Ins(Met 30), A238s, Del(I239)
Length = 257
Score = 28.9 bits (63), Expect = 0.33
Identities = 20/67 (29%), Positives = 32/67 (46%), Gaps = 3/67 (4%)
Query: 45 YFSAKKLRSFLRSKSLEISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKE 104
Y+S K + S K L ++ A K+SKENKK LL +L + + ++ D +
Sbjct: 139 YYSPKSKKD--TSTPAAFGKTLNKLIANGKLSKENKKFLL-DLMLNNKSGDTLIKDGVPK 195
Query: 105 AYMITQK 111
Y + K
Sbjct: 196 DYKVADK 202
>pdb|1A76| Flap Endonuclease-1 From Methanococcus Jannaschii
pdb|1A77| Flap Endonuclease-1 From Methanococcus Jannaschii
Length = 326
Score = 28.9 bits (63), Expect = 0.33
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 80 KKKLLKELEQAKEKAELIVSDA-NKEAYMITQKYELQTKMDVENLIKNSKALMDL 133
K+K K + KEKAEL + +A KE + KY + +++N K L+ L
Sbjct: 87 KEKTRKVRREMKEKAELKMKEAIKKEDFEEAAKYAKRVSYLTPKMVENCKYLLSL 141
>pdb|1DJA| Structure Of Beta-Lactamase Precursor, K73h Mutant, At 298k
Length = 258
Score = 28.9 bits (63), Expect = 0.33
Identities = 20/67 (29%), Positives = 32/67 (46%), Gaps = 3/67 (4%)
Query: 45 YFSAKKLRSFLRSKSLEISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKE 104
Y+S K + S K L ++ A K+SKENKK LL +L + + ++ D +
Sbjct: 139 YYSPKSKKD--TSTPAAFGKTLNKLIANGKLSKENKKFLL-DLMLNNKSGDTLIKDGVPK 195
Query: 105 AYMITQK 111
Y + K
Sbjct: 196 DYKVADK 202
>pdb|3BLM| Beta-Lactamase (E.C.3.5.2.6)
pdb|1BLC| Beta-Lactamase (E.C.3.5.2.6) Complex With Degradation Products Of
Clavulanate
pdb|1BLH| Beta-Lactamase (E.C.3.5.2.6) Complexed With
[[n-(Benzyloxycarbonyl)amino]methyl]phosphonate
Length = 257
Score = 28.9 bits (63), Expect = 0.33
Identities = 20/67 (29%), Positives = 32/67 (46%), Gaps = 3/67 (4%)
Query: 45 YFSAKKLRSFLRSKSLEISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKE 104
Y+S K + S K L ++ A K+SKENKK LL +L + + ++ D +
Sbjct: 138 YYSPKSKKD--TSTPAAFGKTLNKLIANGKLSKENKKFLL-DLMLNNKSGDTLIKDGVPK 194
Query: 105 AYMITQK 111
Y + K
Sbjct: 195 DYKVADK 201
>pdb|1ALQ| Circularly Permuted Beta-Lactamase From Staphylococcus Aureus Pc1
Length = 266
Score = 28.9 bits (63), Expect = 0.33
Identities = 20/67 (29%), Positives = 32/67 (46%), Gaps = 3/67 (4%)
Query: 45 YFSAKKLRSFLRSKSLEISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKE 104
Y+S K + S K L ++ A K+SKENKK LL +L + + ++ D +
Sbjct: 184 YYSPKSKKD--TSTPAAFGKTLNKLIANGKLSKENKKFLL-DLMLNNKSGDTLIKDGVPK 240
Query: 105 AYMITQK 111
Y + K
Sbjct: 241 DYKVADK 247
>pdb|1H6K|C Chain C, Nuclear Cap Binding Complex
pdb|1H6K|B Chain B, Nuclear Cap Binding Complex
pdb|1H6K|A Chain A, Nuclear Cap Binding Complex
Length = 757
Score = 28.5 bits (62), Expect = 0.43
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 44 WYFSAKKLRSFLRSKSLEISKRLEEIQAQLKVSKENKKKLLKELEQAKEK 93
W FS++ R F R EI + + ++ ++ K+ KELE+AKEK
Sbjct: 603 WIFSSELSRDFTRLFVWEI------LHSTIRKMNKHVLKIQKELEEAKEK 646
>pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Q Chain Q, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 261
Score = 28.5 bits (62), Expect = 0.43
Identities = 21/71 (29%), Positives = 38/71 (52%), Gaps = 1/71 (1%)
Query: 47 SAKKLRSFLRSKSLEISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAY 106
SA L + +K++++SK E +++EN K +++ L+Q KE +LI +EA
Sbjct: 188 SALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQ-KEVEQLIKKHEEEEAK 246
Query: 107 MITQKYELQTK 117
+K E + K
Sbjct: 247 AEREKKEKEQK 257
>pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
Length = 771
Score = 28.5 bits (62), Expect = 0.43
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 44 WYFSAKKLRSFLRSKSLEISKRLEEIQAQLKVSKENKKKLLKELEQAKEK 93
W FS++ R F R EI + + ++ ++ K+ KELE+AKEK
Sbjct: 603 WIFSSELSRDFTRLFVWEI------LHSTIRKMNKHVLKIQKELEEAKEK 646
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 27.7 bits (60), Expect = 0.73
Identities = 11/47 (23%), Positives = 28/47 (59%)
Query: 97 IVSDANKEAYMITQKYELQTKMDVENLIKNSKALMDLEVKKIKRELV 143
++S + A+ I + + T +++ +IK + +LMD+E++ E++
Sbjct: 162 LLSSPLRSAFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMI 208
>pdb|1OME|A Chain A, Crystal Structure Of The Omega Loop Deletion Mutant
(Residues 163 - 178 Deleted) Of Beta-Lactamase From
Staphylococcus Aureus Pc1
pdb|1OME|B Chain B, Crystal Structure Of The Omega Loop Deletion Mutant
(Residues 163 - 178 Deleted) Of Beta-Lactamase From
Staphylococcus Aureus Pc1
Length = 242
Score = 27.3 bits (59), Expect = 0.96
Identities = 16/48 (33%), Positives = 26/48 (53%), Gaps = 1/48 (2%)
Query: 64 KRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQK 111
K L ++ A K+SKENKK LL +L + + ++ D + Y + K
Sbjct: 140 KTLNKLIANGKLSKENKKFLL-DLMLNNKSGDTLIKDGVPKDYKVADK 186
>pdb|1DN1|B Chain B, Crystal Structure Of The Neuronal-Sec1SYNTAXIN 1A COMPLEX
Length = 267
Score = 27.3 bits (59), Expect = 0.96
Identities = 22/101 (21%), Positives = 49/101 (47%), Gaps = 13/101 (12%)
Query: 61 EISKRLEEIQAQLKVSKENKKKLLKEL----------EQAKEKAELIVSDANKEAYMITQ 110
E +++EEI+ + EN +++ ++ E+ KE+ E ++SD K A +
Sbjct: 32 EFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRS 91
Query: 111 KYE-LQTKMDVENLIKNSKALMDLEVKKIKRELVESVFKDL 150
K + ++ ++ E + S A DL ++K + + F ++
Sbjct: 92 KLKSIEQSIEQEEGLNRSSA--DLRIRKTQHSTLSRKFVEV 130
>pdb|1BR0|A Chain A, Three Dimensional Structure Of The N-Terminal Domain Of
Syntaxin 1a
Length = 120
Score = 27.3 bits (59), Expect = 0.96
Identities = 22/101 (21%), Positives = 49/101 (47%), Gaps = 13/101 (12%)
Query: 61 EISKRLEEIQAQLKVSKENKKKLLKEL----------EQAKEKAELIVSDANKEAYMITQ 110
E +++EEI+ + EN +++ ++ E+ KE+ E ++SD K A +
Sbjct: 6 EFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRS 65
Query: 111 KYE-LQTKMDVENLIKNSKALMDLEVKKIKRELVESVFKDL 150
K + ++ ++ E + S A DL ++K + + F ++
Sbjct: 66 KLKSIEQSIEQEEGLNRSSA--DLRIRKTQHSTLSRKFVEV 104
>pdb|1EZ3|A Chain A, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a
pdb|1EZ3|B Chain B, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a
pdb|1EZ3|C Chain C, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a
Length = 127
Score = 27.3 bits (59), Expect = 0.96
Identities = 22/101 (21%), Positives = 49/101 (47%), Gaps = 13/101 (12%)
Query: 61 EISKRLEEIQAQLKVSKENKKKLLKEL----------EQAKEKAELIVSDANKEAYMITQ 110
E +++EEI+ + EN +++ ++ E+ KE+ E ++SD K A +
Sbjct: 9 EFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRS 68
Query: 111 KYE-LQTKMDVENLIKNSKALMDLEVKKIKRELVESVFKDL 150
K + ++ ++ E + S A DL ++K + + F ++
Sbjct: 69 KLKSIEQSIEQEEGLNRSSA--DLRIRKTQHSTLSRKFVEV 107
>pdb|1F4K|A Chain A, Crystal Structure Of The Replication Terminator ProteinB-
Site Dna Complex
pdb|1F4K|B Chain B, Crystal Structure Of The Replication Terminator ProteinB-
Site Dna Complex
Length = 122
Score = 26.6 bits (57), Expect = 1.6
Identities = 28/89 (31%), Positives = 42/89 (46%), Gaps = 8/89 (8%)
Query: 12 ILLSPLCATGLDISQTDIIERSLNFLLFVGILWYFSAKKLRSFLRSKSLEISKRLEEIQA 71
+L S G + T++ RSL+ LL GIL KK + L+ L K E
Sbjct: 40 VLRSEFKEIGFKPNHTEVY-RSLHELLDDGILKQIKVKKEGAKLQEVVLYQFKDYE---- 94
Query: 72 QLKVSKENKKKLLKELEQAKEKAELIVSD 100
+K KK+L EL+++K+ E +SD
Sbjct: 95 ---AAKLYKKQLKVELDRSKKLIEKALSD 120
>pdb|1I6Z|A Chain A, Bag Domain Of Bag1 Cochaperone
Length = 135
Score = 26.2 bits (56), Expect = 2.1
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 77 KENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYELQTKMDVENLIK-NSKALMDLE- 134
+E + K LK+LE + EK + + NKE I Q + L ++ E L K + K +E
Sbjct: 16 EEVELKKLKDLEVSAEKIANHLQELNKELSGIQQGF-LAKELQAEALCKLDRKVKATIEQ 74
Query: 135 ----VKKIKRELVESVFKDLRESKK 155
+++I ++ FKD R +K
Sbjct: 75 FMKILEEIDTMVLPEQFKDSRLKRK 99
>pdb|1BM9|A Chain A, Replication Terminator Protein From Bacillus Subtilis
pdb|1BM9|B Chain B, Replication Terminator Protein From Bacillus Subtilis
Length = 122
Score = 26.2 bits (56), Expect = 2.1
Identities = 28/89 (31%), Positives = 41/89 (45%), Gaps = 8/89 (8%)
Query: 12 ILLSPLCATGLDISQTDIIERSLNFLLFVGILWYFSAKKLRSFLRSKSLEISKRLEEIQA 71
+L S G + T++ RSL+ LL GIL KK + L+ L K E
Sbjct: 40 VLRSEFKEIGFKPNHTEVY-RSLHELLDDGILKQIKVKKEGAKLQEVVLYQFKDYE---- 94
Query: 72 QLKVSKENKKKLLKELEQAKEKAELIVSD 100
+K KK+L EL++ K+ E +SD
Sbjct: 95 ---AAKLYKKQLKVELDRCKKLIEKALSD 120
>pdb|1MC8|A Chain A, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
pdb|1MC8|B Chain B, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
Length = 343
Score = 25.8 bits (55), Expect = 2.8
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 78 ENKKKLLKELEQAKEKAELIVSDANKEAYM-ITQKYELQTKMDVENLIKNSKALMDL 133
E K+K L++ +A+E+AEL +A + + +KY + E LI+++K L+ L
Sbjct: 85 EFKRKELEKRREAREEAELKWKEALAKGNLEEARKYAQRATKVNEMLIEDAKKLLQL 141
>pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolipoprotein-Manduca
Sexta Apolipophorin-Iii
Length = 166
Score = 25.8 bits (55), Expect = 2.8
Identities = 17/74 (22%), Positives = 37/74 (49%), Gaps = 2/74 (2%)
Query: 47 SAKKLRSFLRSKSLEISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAY 106
+A++LR E + +++QA ++ + + +KL KE+ E+ ++ K+AY
Sbjct: 86 TAEELRKAHPDVEKEANAFKDKLQAAVQTTVQESQKLAKEVASNMEETNKKLAPKIKQAY 145
Query: 107 --MITQKYELQTKM 118
+ E+Q K+
Sbjct: 146 DDFVKHAEEVQKKL 159
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 25.8 bits (55), Expect = 2.8
Identities = 10/47 (21%), Positives = 27/47 (57%)
Query: 97 IVSDANKEAYMITQKYELQTKMDVENLIKNSKALMDLEVKKIKRELV 143
++S + + I + + T +++ +IK + +LMD+E++ E++
Sbjct: 162 LLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMI 208
>pdb|1HU3|A Chain A, Middle Domain Of Human Eif4gii
Length = 260
Score = 25.8 bits (55), Expect = 2.8
Identities = 31/125 (24%), Positives = 53/125 (41%), Gaps = 24/125 (19%)
Query: 64 KRLEEIQAQLKVSKENKKKLLKELEQAKEKA------------ELIVSDANKEAYMITQK 111
K+ +E++A + E + +L ELE+AK+KA EL EA
Sbjct: 114 KKQKELEAAS--APEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKXLTEAIXHDCV 171
Query: 112 YELQTKMDVENLIKNSKAL----MDLEVKKIKREL------VESVFKDLRESKKVSFNAQ 161
+L D E+L + L DL+ +K K E + K+ + S ++ F Q
Sbjct: 172 VKLLKNHDEESLECLCRLLTTIGKDLDFEKAKPRXDQYFNQXEKIVKERKTSSRIRFXLQ 231
Query: 162 DCVNI 166
D +++
Sbjct: 232 DVIDL 236
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 25.8 bits (55), Expect = 2.8
Identities = 10/47 (21%), Positives = 27/47 (57%)
Query: 97 IVSDANKEAYMITQKYELQTKMDVENLIKNSKALMDLEVKKIKRELV 143
++S + + I + + T +++ +IK + +LMD+E++ E++
Sbjct: 162 LLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMI 208
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 25.8 bits (55), Expect = 2.8
Identities = 10/47 (21%), Positives = 27/47 (57%)
Query: 97 IVSDANKEAYMITQKYELQTKMDVENLIKNSKALMDLEVKKIKRELV 143
++S + + I + + T +++ +IK + +LMD+E++ E++
Sbjct: 162 LLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMI 208
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 25.8 bits (55), Expect = 2.8
Identities = 10/47 (21%), Positives = 27/47 (57%)
Query: 97 IVSDANKEAYMITQKYELQTKMDVENLIKNSKALMDLEVKKIKRELV 143
++S + + I + + T +++ +IK + +LMD+E++ E++
Sbjct: 162 LLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMI 208
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 25.8 bits (55), Expect = 2.8
Identities = 10/47 (21%), Positives = 27/47 (57%)
Query: 97 IVSDANKEAYMITQKYELQTKMDVENLIKNSKALMDLEVKKIKRELV 143
++S + + I + + T +++ +IK + +LMD+E++ E++
Sbjct: 162 LLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMI 208
>pdb|1B43|A Chain A, Fen-1 From P. Furiosus
pdb|1B43|B Chain B, Fen-1 From P. Furiosus
Length = 340
Score = 25.4 bits (54), Expect = 3.6
Identities = 19/57 (33%), Positives = 32/57 (55%), Gaps = 1/57 (1%)
Query: 78 ENKKKLLKELEQAKEKAELIVSDA-NKEAYMITQKYELQTKMDVENLIKNSKALMDL 133
E KKK L++ +A+E+AE +A K +KY + E LI+++K L++L
Sbjct: 85 EFKKKELEKRREAREEAEEKWREALEKGEIEEARKYAQRATRVNEMLIEDAKKLLEL 141
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 25.4 bits (54), Expect = 3.6
Identities = 26/127 (20%), Positives = 55/127 (42%), Gaps = 9/127 (7%)
Query: 48 AKKLRSFLRSKSLEISKR-----LEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDAN 102
A +L ++ K + R +E +Q+ + KE KK Q + E I +
Sbjct: 775 ANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQ 834
Query: 103 KEAYMITQKYELQTKMDVENLIKNSKALMDLEVKKIKRELVESVFKDLRESKKVSFNAQD 162
+ +I ++ + N I ++ + ++ K ++E E++ +L+ KK++ Q
Sbjct: 835 TKLRLIKREPFVAPAGLTPNEIDSTWSALE----KAEQEHAEALRIELKRQKKIAVLLQK 890
Query: 163 CVNILKQ 169
ILK+
Sbjct: 891 YNRILKK 897
>pdb|1K23|C Chain C, Inorganic Pyrophosphatase (Family Ii) From Bacillus
Subtilis
pdb|1K23|A Chain A, Inorganic Pyrophosphatase (Family Ii) From Bacillus
Subtilis
pdb|1K23|B Chain B, Inorganic Pyrophosphatase (Family Ii) From Bacillus
Subtilis
pdb|1K23|D Chain D, Inorganic Pyrophosphatase (Family Ii) From Bacillus
Subtilis
Length = 309
Score = 25.0 bits (53), Expect = 4.7
Identities = 13/48 (27%), Positives = 24/48 (49%)
Query: 57 SKSLEISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKE 104
S +L I +++ V+ EN LLK + K++ +++DA E
Sbjct: 262 SLALAIGNEAAKVEKAFNVTLENNTALLKGVVSRKKQVVPVLTDAXAE 309
>pdb|1HJO|A Chain A, Heat-Shock 70kd Protein 42kd Atpase N-Terminal Domain
Length = 380
Score = 25.0 bits (53), Expect = 4.7
Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 66 LEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYELQTKMDVENLIK 125
+EE + + K K+ ++ L A E+A+ +S + + + I +E ++
Sbjct: 240 VEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFE-----GIDFYTS 294
Query: 126 NSKALMDLEVKKIKRELVESVFKDLRESKKVSFNAQDCV 164
++A + + R +E V K LR++K D V
Sbjct: 295 ITRARFEELCSDLFRSTLEPVEKALRDAKLDKAQIHDLV 333
>pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex Containing An 8-Oxog
Lesion
Length = 564
Score = 24.6 bits (52), Expect = 6.2
Identities = 20/68 (29%), Positives = 34/68 (49%), Gaps = 4/68 (5%)
Query: 48 AKKLRSFLRSKSLEISKRLEEIQAQLKVSK--ENKKKLLKELEQAKEKAELIVSD--ANK 103
AKK + + L+ +K ++ K K E+KKK ++ LE+ K E+ +D NK
Sbjct: 452 AKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENK 511
Query: 104 EAYMITQK 111
+ + T K
Sbjct: 512 QIALGTSK 519
>pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomerase I Dna Complex
Length = 563
Score = 24.6 bits (52), Expect = 6.2
Identities = 20/68 (29%), Positives = 34/68 (49%), Gaps = 4/68 (5%)
Query: 48 AKKLRSFLRSKSLEISKRLEEIQAQLKVSK--ENKKKLLKELEQAKEKAELIVSD--ANK 103
AKK + + L+ +K ++ K K E+KKK ++ LE+ K E+ +D NK
Sbjct: 451 AKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENK 510
Query: 104 EAYMITQK 111
+ + T K
Sbjct: 511 QIALGTSK 518
>pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex
Length = 592
Score = 24.6 bits (52), Expect = 6.2
Identities = 20/68 (29%), Positives = 34/68 (49%), Gaps = 4/68 (5%)
Query: 48 AKKLRSFLRSKSLEISKRLEEIQAQLKVSK--ENKKKLLKELEQAKEKAELIVSD--ANK 103
AKK + + L+ +K ++ K K E+KKK ++ LE+ K E+ +D NK
Sbjct: 480 AKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENK 539
Query: 104 EAYMITQK 111
+ + T K
Sbjct: 540 QIALGTSK 547
>pdb|1JFK|A Chain A, Minimum Energy Representative Structure Of A Calcium Bound
Ef-Hand Protein From Entamoeba Histolytica
pdb|1JFJ|A Chain A, Nmr Solution Structure Of An Ef-Hand Calcium Binding
Protein From Entamoeba Histolytica
Length = 134
Score = 24.6 bits (52), Expect = 6.2
Identities = 11/53 (20%), Positives = 28/53 (52%)
Query: 60 LEISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQKY 112
L++ +L ++ K++KE K+ K +++ +DAN + Y+ +++
Sbjct: 77 LKVLYKLMDVDGDGKLTKEEVTSFFKKHGIEKVAEQVMKADANGDGYITLEEF 129
>pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe
Bound To The Atpase Domain Of The Molecular Chaperone
Dnak
Length = 383
Score = 24.3 bits (51), Expect = 8.1
Identities = 19/89 (21%), Positives = 42/89 (46%), Gaps = 13/89 (14%)
Query: 62 ISKRLEEIQAQLKVSKENKKKLLKELEQAKEKAELIVSDANKEAYMITQKYELQTKMDVE 121
I+ +EE + + N ++ L++A EKA++ +S A QT +++
Sbjct: 237 INYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQ------------QTDVNLP 284
Query: 122 NLIKNSKALMDLEVKKIKRELVESVFKDL 150
+ ++ + + K+ R +ES+ +DL
Sbjct: 285 YITADATGPKHMNI-KVTRAKLESLVEDL 312
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.135 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 709,207
Number of Sequences: 13198
Number of extensions: 24038
Number of successful extensions: 142
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 49
length of query: 171
length of database: 2,899,336
effective HSP length: 82
effective length of query: 89
effective length of database: 1,817,100
effective search space: 161721900
effective search space used: 161721900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)