BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645751|ref|NP_207928.1| ATP synthase F0, subunit b*
(atpF*) [Helicobacter pylori 26695]
(144 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1GE9|A Chain A, Solution Structure Of The Ribosome Recy... 34 0.006
pdb|1QS1|A Chain A, Crystal Structure Of Vegetative Insecti... 34 0.006
pdb|1QS2|A Chain A, Crystal Structure Of Vip2 With Nad 34 0.006
pdb|1AV1|A Chain A, Crystal Structure Of Human Apolipoprote... 31 0.063
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 30 0.082
pdb|1GK4|A Chain A, Human Vimentin Coil 2b Fragment (Cys2) ... 28 0.31
pdb|1LD7|A Chain A, Co-Crystal Structure Of Human Farnesylt... 28 0.53
pdb|1FLC|B Chain B, X-Ray Structure Of The Haemagglutinin-E... 27 1.2
pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Co... 26 2.0
pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Co... 26 2.0
pdb|1FC0|B Chain B, Human Liver Glycogen Phosphorylase Comp... 26 2.0
pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer 26 2.0
pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta >g... 25 2.6
pdb|1PHP| 3-Phosphoglycerate Kinase (Pgk) (E.C.2.7.2.3) 25 2.6
pdb|1IQ0|A Chain A, Thermus Thermophilus Arginyl-Trna Synth... 25 3.5
pdb|1M9I|A Chain A, Crystal Structure Of Phosphorylation-Mi... 25 4.5
pdb|1FNT|D Chain D, Crystal Structure Of The 20s Proteasome... 25 4.5
pdb|1JSM|B Chain B, Structure Of H5 Avian Haemagglutinin >g... 24 7.7
pdb|1HD0|A Chain A, Heterogeneous Nuclear Ribonucleoprotein... 24 7.7
pdb|1AVC| Bovine Annexin Vi (Calcium-Bound) 24 7.7
>pdb|1GE9|A Chain A, Solution Structure Of The Ribosome Recycling Factor
Length = 184
Score = 34.3 bits (77), Expect = 0.006
Identities = 20/76 (26%), Positives = 33/76 (43%)
Query: 61 GHQIEALLKEAAEKRREIIAEAIQKATESYDAVIKQKENELNQEFEAFAKQLQNEKQALK 120
G+ I L E+RR + + K TE ++ E + E ++EK+
Sbjct: 97 GNVIRVTLPPLTEERRRELVRLLHKITEEARVRVRNVRREAKEMIEELEGISEDEKKRAL 156
Query: 121 EQLQAQMPVFEDELNK 136
E+LQ + DE+NK
Sbjct: 157 ERLQKLTDKYIDEINK 172
>pdb|1QS1|A Chain A, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|B Chain B, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|C Chain C, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|D Chain D, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
Length = 462
Score = 34.3 bits (77), Expect = 0.006
Identities = 26/110 (23%), Positives = 51/110 (45%), Gaps = 12/110 (10%)
Query: 36 MDNRQAEIKDSLAKIKTDNAQSVEIGHQIEALLKEAAEKRREIIAEAIQKATESYDAVIK 95
+DN D ++K+ + + QIE LK++ + + +I AEA ++Y+ K
Sbjct: 234 IDNGYMVHVDKVSKVVKKGVECL----QIEGTLKKSLDFKNDINAEAHSWGMKNYEEWAK 289
Query: 96 QKENELNQEFEAFAKQ--------LQNEKQALKEQLQAQMPVFEDELNKR 137
+ + + +A+Q L+N+ + E+L AQ+ D L K+
Sbjct: 290 DLTDSQREALDGYARQDYKEINNYLRNQGGSGNEKLDAQIKNISDALGKK 339
>pdb|1QS2|A Chain A, Crystal Structure Of Vip2 With Nad
Length = 401
Score = 34.3 bits (77), Expect = 0.006
Identities = 26/110 (23%), Positives = 51/110 (45%), Gaps = 12/110 (10%)
Query: 36 MDNRQAEIKDSLAKIKTDNAQSVEIGHQIEALLKEAAEKRREIIAEAIQKATESYDAVIK 95
+DN D ++K+ + + QIE LK++ + + +I AEA ++Y+ K
Sbjct: 173 IDNGYMVHVDKVSKVVKKGVECL----QIEGTLKKSLDFKNDINAEAHSWGMKNYEEWAK 228
Query: 96 QKENELNQEFEAFAKQ--------LQNEKQALKEQLQAQMPVFEDELNKR 137
+ + + +A+Q L+N+ + E+L AQ+ D L K+
Sbjct: 229 DLTDSQREALDGYARQDYKEINNYLRNQGGSGNEKLDAQIKNISDALGKK 278
>pdb|1AV1|A Chain A, Crystal Structure Of Human Apolipoprotein A-I
pdb|1AV1|B Chain B, Crystal Structure Of Human Apolipoprotein A-I
pdb|1AV1|C Chain C, Crystal Structure Of Human Apolipoprotein A-I
pdb|1AV1|D Chain D, Crystal Structure Of Human Apolipoprotein A-I
Length = 201
Score = 30.8 bits (68), Expect = 0.063
Identities = 21/111 (18%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 35 FMDNRQAEIKDSLAKIKTDNAQSVEIGHQIEALLKEAAEK---RREIIAEAIQKATESYD 91
F DN + E + ++ D E+ +++ L + +K E+ + ++
Sbjct: 29 FWDNLEKETEGLRQEMSKDLE---EVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQ 85
Query: 92 AVIKQKENELNQEFEAFAKQLQNEKQALKEQLQAQMPVFEDELNKRVAMGL 142
+QK +EL ++ +++++ +A + L+ + + DEL +R+A L
Sbjct: 86 EGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARL 136
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 30.4 bits (67), Expect = 0.082
Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 40 QAEIKDSLAKIKTDNAQSVEIGHQIEALLKEAAEKRREIIAEAIQKATESYDAVIKQKEN 99
+ E +L K+K + + ++E LK+ + R+E+ E I++ E + + ++
Sbjct: 1023 EEEKAKNLTKLKNKHESMIS---ELEVRLKKEEKSRQEL--EKIKRKLEGESSDLHEQIA 1077
Query: 100 ELNQEFEAFAKQLQNEKQALKEQLQAQMPVFEDELNKR 137
EL + QL ++ E+LQA + EDE +++
Sbjct: 1078 ELQAQIAELKAQLAKKE----EELQAALARLEDETSQK 1111
Score = 28.9 bits (63), Expect = 0.24
Identities = 25/114 (21%), Positives = 54/114 (46%), Gaps = 15/114 (13%)
Query: 37 DNRQAEIKDSLAKIKTDNAQSVE----IGHQIEALLKEAAEKRREIIAEAIQKATESYDA 92
D + +++D + ++ N + + + ++ L AE+ + A+ + K +++
Sbjct: 982 DGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEK--AKNLTKLKNKHES 1039
Query: 93 VIKQ------KENELNQEFEAFAKQLQNEKQALKEQ---LQAQMPVFEDELNKR 137
+I + KE + QE E ++L+ E L EQ LQAQ+ + +L K+
Sbjct: 1040 MISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKK 1093
Score = 27.3 bits (59), Expect = 0.70
Identities = 23/101 (22%), Positives = 49/101 (47%), Gaps = 11/101 (10%)
Query: 39 RQAEIKDSLAKIKTDNAQSVEIGHQIEALLKEAAEKRREIIAEA------IQKATESYDA 92
RQ + + L +++ + Q E + LL+E + E+ AEA + + +
Sbjct: 872 RQQKAEAELKELEQKHTQLCEEKN----LLQEKLQAETELYAEAEEMRVRLAAKKQELEE 927
Query: 93 VIKQKENELNQEFEAFAKQLQNEKQALKEQLQAQMPVFEDE 133
++ + E + +E E ++QLQ EK+ +++Q+ E+E
Sbjct: 928 ILHEMEARIEEEEER-SQQLQAEKKKMQQQMLDLEEQLEEE 967
Score = 26.6 bits (57), Expect = 1.2
Identities = 19/68 (27%), Positives = 32/68 (46%), Gaps = 5/68 (7%)
Query: 73 EKRREIIAEAIQKATESYDAVIKQKENELNQEFEAFAKQLQNEKQALKEQLQAQMPVFED 132
E+ + E +Q+ E +QK +E E QL EK L+E+LQA+ ++ +
Sbjct: 856 EEEMQAKDEELQRTKER-----QQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE 910
Query: 133 ELNKRVAM 140
RV +
Sbjct: 911 AEEMRVRL 918
Score = 24.3 bits (51), Expect = 5.9
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 69 KEAAEKRREIIAEAIQKATESYDA--VIKQK---ENELNQEFEAFAKQLQNEKQALKEQL 123
KE +K + E QK T+ + ++++K E EL E E +L +KQ L+E L
Sbjct: 870 KERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEIL 929
Query: 124 QAQMPVFEDE 133
E+E
Sbjct: 930 HEMEARIEEE 939
>pdb|1GK4|A Chain A, Human Vimentin Coil 2b Fragment (Cys2)
pdb|1GK4|B Chain B, Human Vimentin Coil 2b Fragment (Cys2)
pdb|1GK4|D Chain D, Human Vimentin Coil 2b Fragment (Cys2)
pdb|1GK4|F Chain F, Human Vimentin Coil 2b Fragment (Cys2)
pdb|1GK4|C Chain C, Human Vimentin Coil 2b Fragment (Cys2)
pdb|1GK4|E Chain E, Human Vimentin Coil 2b Fragment (Cys2)
Length = 84
Score = 28.5 bits (62), Expect = 0.31
Identities = 15/65 (23%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 81 EAIQKATESYDAVIKQKENELNQE---FEAFAKQLQNEKQALKEQLQAQMPVFEDELNKR 137
+A++ ES + +++ E E ++ +LQ+E Q +KE++ + ++D LN +
Sbjct: 4 DALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVK 63
Query: 138 VAMGL 142
+A+ +
Sbjct: 64 MALDI 68
>pdb|1LD7|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 66
pdb|1LD8|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 49
pdb|1JCQ|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And The
Peptidomimetic Inhibitor L-739,750
Length = 382
Score = 27.7 bits (60), Expect = 0.53
Identities = 24/102 (23%), Positives = 49/102 (47%), Gaps = 5/102 (4%)
Query: 26 VWVYRP-LLAFMDNRQAEIKDSLAKIKTDNAQSVEIGHQIEALLKEAAEKRREI--IAEA 82
VW +R LL + E + + I + ++ ++ H L++ + +E+ IA+
Sbjct: 133 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADI 192
Query: 83 IQKATESYDAVIKQKENELNQEFEAFAKQLQNEKQALKEQLQ 124
+ + ++Y A Q + QEF+ + +LQ Q LKE ++
Sbjct: 193 LNQDAKNYHAW--QHRQWVIQEFKLWDNELQYVDQLLKEDVR 232
>pdb|1FLC|B Chain B, X-Ray Structure Of The Haemagglutinin-Esterase-Fusion
Glycoprotein Of Influenza C Virus
pdb|1FLC|D Chain D, X-Ray Structure Of The Haemagglutinin-Esterase-Fusion
Glycoprotein Of Influenza C Virus
pdb|1FLC|F Chain F, X-Ray Structure Of The Haemagglutinin-Esterase-Fusion
Glycoprotein Of Influenza C Virus
Length = 175
Score = 26.6 bits (57), Expect = 1.2
Identities = 18/74 (24%), Positives = 34/74 (45%)
Query: 69 KEAAEKRREIIAEAIQKATESYDAVIKQKENELNQEFEAFAKQLQNEKQALKEQLQAQMP 128
KE+AEK E I IQ S + I++ + ++ + +A + A E L ++
Sbjct: 38 KESAEKGFEKIGNDIQILKSSINIAIEKLNDRISHDEQAIRDLTLEIENARSEALLGELG 97
Query: 129 VFEDELNKRVAMGL 142
+ L +++GL
Sbjct: 98 IIRALLVGNISIGL 111
>pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Amp
Length = 846
Score = 25.8 bits (55), Expect = 2.0
Identities = 22/85 (25%), Positives = 37/85 (42%), Gaps = 8/85 (9%)
Query: 31 PLLAFMDNRQAEIKDSLAKIKTD-NAQSVEIGHQIEALLKEAAEKRREIIAEAIQKATES 89
P+ +M+N ++ A+ D N + +G I+A+L +AE I +
Sbjct: 229 PVPGYMNNTVNTMRLWSARAPNDFNLRDFNVGDYIQAVLDRN-------LAENISRVLYP 281
Query: 90 YDAVIKQKENELNQEFEAFAKQLQN 114
D + KE L QE+ A LQ+
Sbjct: 282 NDNFFEGKELRLKQEYFVVAATLQD 306
>pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526,423
pdb|1EM6|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526,423
pdb|1EXV|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403,700
pdb|1EXV|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403,700
Length = 847
Score = 25.8 bits (55), Expect = 2.0
Identities = 22/85 (25%), Positives = 37/85 (42%), Gaps = 8/85 (9%)
Query: 31 PLLAFMDNRQAEIKDSLAKIKTD-NAQSVEIGHQIEALLKEAAEKRREIIAEAIQKATES 89
P+ +M+N ++ A+ D N + +G I+A+L +AE I +
Sbjct: 230 PVPGYMNNTVNTMRLWSARAPNDFNLRDFNVGDYIQAVLDRN-------LAENISRVLYP 282
Query: 90 YDAVIKQKENELNQEFEAFAKQLQN 114
D + KE L QE+ A LQ+
Sbjct: 283 NDNFFEGKELRLKQEYFVVAATLQD 307
>pdb|1FC0|B Chain B, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl- Beta-D-Glucopyranosylamine
pdb|1FC0|A Chain A, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl- Beta-D-Glucopyranosylamine
Length = 846
Score = 25.8 bits (55), Expect = 2.0
Identities = 22/85 (25%), Positives = 37/85 (42%), Gaps = 8/85 (9%)
Query: 31 PLLAFMDNRQAEIKDSLAKIKTD-NAQSVEIGHQIEALLKEAAEKRREIIAEAIQKATES 89
P+ +M+N ++ A+ D N + +G I+A+L +AE I +
Sbjct: 229 PVPGYMNNTVNTMRLWSARAPNDFNLRDFNVGDYIQAVLDRN-------LAENISRVLYP 281
Query: 90 YDAVIKQKENELNQEFEAFAKQLQN 114
D + KE L QE+ A LQ+
Sbjct: 282 NDNFFEGKELRLKQEYFVVAATLQD 306
>pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer
Length = 419
Score = 25.8 bits (55), Expect = 2.0
Identities = 16/62 (25%), Positives = 29/62 (45%), Gaps = 2/62 (3%)
Query: 62 HQIEALLKEAAEKRREIIAEAIQKATESYDAVIKQKENELNQEFEAFAKQLQNEKQALKE 121
H L+ + +E ++A A D IK ++ LN+E E ++ + + LKE
Sbjct: 9 HHSSGLVPRGSHMPKETPSKAAADALS--DLEIKDSKSNLNKELETLREENRVKSDMLKE 66
Query: 122 QL 123
+L
Sbjct: 67 KL 68
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 25.4 bits (54), Expect = 2.6
Identities = 22/101 (21%), Positives = 43/101 (41%), Gaps = 10/101 (9%)
Query: 32 LLAFMDNRQAEIKDSLAKIKTDNAQSVEIGHQI-------EALLKEAAEKRREIIAEAIQ 84
L A ++ ++ IKD K++ +++ + E L KE + + + I+
Sbjct: 125 LKALKESSESNIKDIKKKLEAKRLDRIQVXXRSTSDKAAQERLKKEINNSHIQEVVQTIK 184
Query: 85 KATES---YDAVIKQKENELNQEFEAFAKQLQNEKQALKEQ 122
TE Y +++K+ E + + QLQ E A E+
Sbjct: 185 LLTEKTARYQQKLEEKQAENLRAIQEKEGQLQQEAVAEYEE 225
>pdb|1PHP| 3-Phosphoglycerate Kinase (Pgk) (E.C.2.7.2.3)
Length = 394
Score = 25.4 bits (54), Expect = 2.6
Identities = 13/61 (21%), Positives = 26/61 (42%)
Query: 34 AFMDNRQAEIKDSLAKIKTDNAQSVEIGHQIEALLKEAAEKRREIIAEAIQKATESYDAV 93
AF + + D+ +A + I H + A+ EK E++ +A+ + A+
Sbjct: 133 AFAELADLYVNDAFGAAHRAHASTEGIAHYLPAVAGFLMEKELEVLGKALSNPDRPFTAI 192
Query: 94 I 94
I
Sbjct: 193 I 193
>pdb|1IQ0|A Chain A, Thermus Thermophilus Arginyl-Trna Synthetase
Length = 592
Score = 25.0 bits (53), Expect = 3.5
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 76 REIIAEAIQKATESYDAVI--------KQKENELNQEFEAFAKQLQNEKQALKEQLQAQM 127
R + EAI +A + + K K + A AK+L+ QA+ ++L+ ++
Sbjct: 3 RRALEEAIAQALKEMGVPVRLKVARAPKDKPGDYGVPLFALAKELRKPPQAIAQELKDRL 62
Query: 128 PVFE 131
P+ E
Sbjct: 63 PLPE 66
>pdb|1M9I|A Chain A, Crystal Structure Of Phosphorylation-Mimicking Mutant
T356d Of Annexin Vi
Length = 672
Score = 24.6 bits (52), Expect = 4.5
Identities = 24/89 (26%), Positives = 42/89 (46%), Gaps = 11/89 (12%)
Query: 42 EIKDSLAKIKTDNAQSVEI--------GHQIEALLKEAAEKRREIIAEAIQKATESYDAV 93
EIKD+++ I TD +EI HQ+ A K+A E R++ A+ I + + +
Sbjct: 99 EIKDAISGIGTDEKCLIEILASRTNEQMHQLVAAYKDAYE--RDLEADIIGDTSGHFQKM 156
Query: 94 IKQKENELNQEFEAFAKQL-QNEKQALKE 121
+ +E + ++ L Q + Q L E
Sbjct: 157 LVVLLQGTREEDDVVSEDLVQQDVQDLYE 185
>pdb|1FNT|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
Length = 254
Score = 24.6 bits (52), Expect = 4.5
Identities = 11/61 (18%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 66 ALLKEAAEKRREIIAEAIQKATESYDAVIKQKENEL----NQEFEAFAKQLQNEKQALKE 121
A ++E + + E +Q ++ + + + ++++ ++E + Q++ EKQ +E
Sbjct: 186 ATVEECVKLTVRSLLEVVQTGAKNIEITVVKPDSDIVALSSEEINQYVTQIEQEKQEQQE 245
Query: 122 Q 122
Q
Sbjct: 246 Q 246
>pdb|1JSM|B Chain B, Structure Of H5 Avian Haemagglutinin
pdb|1JSN|B Chain B, Structure Of Avian H5 Haemagglutinin Complexed With Lsta
Receptro Analog
pdb|1JSO|B Chain B, Structure Of Avian H5 Haemagglutinin Bound To Lstc
Receptor Analog
Length = 176
Score = 23.9 bits (50), Expect = 7.7
Identities = 13/47 (27%), Positives = 25/47 (52%), Gaps = 1/47 (2%)
Query: 81 EAIQKATESYDAVIKQKENELNQEFEAFAKQLQNEKQALKEQLQAQM 127
E+ QKA + + +++N +FEA K+ N ++ + E L +M
Sbjct: 39 ESTQKAIDGTTNKVNSIIDKMNTQFEAVGKEFNNLERRI-ENLNKKM 84
>pdb|1HD0|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
pdb|1HD1|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
Length = 75
Score = 23.9 bits (50), Expect = 7.7
Identities = 18/67 (26%), Positives = 30/67 (43%), Gaps = 11/67 (16%)
Query: 37 DNRQAEIKDSLAKIKTDNAQSVEIGHQIEALLK-EAAEKRREIIAEAIQKATESYDAVIK 95
D + ++KD +K G ++ LK + R + K +ES D V+
Sbjct: 10 DTTKKDLKDYFSKF----------GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD 59
Query: 96 QKENELN 102
QKE++LN
Sbjct: 60 QKEHKLN 66
>pdb|1AVC| Bovine Annexin Vi (Calcium-Bound)
Length = 673
Score = 23.9 bits (50), Expect = 7.7
Identities = 16/44 (36%), Positives = 23/44 (51%), Gaps = 8/44 (18%)
Query: 42 EIKDSLAKIKTDNAQSVEI--------GHQIEALLKEAAEKRRE 77
EIKD+++ I TD +EI HQ+ A K+A E+ E
Sbjct: 100 EIKDAISGIGTDEKCLIEILASRTNEQIHQLVAAYKDAYERDLE 143
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.130 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 644,838
Number of Sequences: 13198
Number of extensions: 19719
Number of successful extensions: 100
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 84
Number of HSP's gapped (non-prelim): 25
length of query: 144
length of database: 2,899,336
effective HSP length: 80
effective length of query: 64
effective length of database: 1,843,496
effective search space: 117983744
effective search space used: 117983744
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)