BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645752|ref|NP_207929.1| plasmid
replication-partition related protein [Helicobacter pylori 26695]
(290 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FSZ| Crystal Structure Of The Cell-Division Protein ... 28 1.6
pdb|1B54| Crystal Structure Of A Yeast Hypothetical Prote... 27 3.6
pdb|1CT5|A Chain A, Crystal Structure Of Yeast Hypothetical... 27 3.6
pdb|1KK7|Y Chain Y, Scallop Myosin In The Near Rigor Confor... 27 3.6
pdb|1KK8|B Chain B, Scallop Myosin (S1-Adp-Befx) In The Act... 27 3.6
pdb|1SCM|B Chain B, Myosin (Regulatory Domain) 27 3.6
pdb|1DFK|Y Chain Y, Nucleotide-Free Scallop Myosin S1-Near ... 26 4.7
pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2 >gi|77... 26 6.1
pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34 - A Nove... 26 6.1
pdb|1QH4|A Chain A, Crystal Structure Of Chicken Brain-Type... 26 6.1
pdb|5EAU| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 25 8.0
pdb|5EAT| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 25 8.0
pdb|5EAS| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 25 8.0
>pdb|1FSZ| Crystal Structure Of The Cell-Division Protein Ftsz At 2.8a
Resolution
Length = 372
Score = 27.7 bits (60), Expect = 1.6
Identities = 15/42 (35%), Positives = 24/42 (56%)
Query: 113 KMREVALIENIQREDLNPLELARSYKELLESYQMTQEELSKI 154
K + L E + E+ N LEL+ KELLE Q T+ +++ +
Sbjct: 2 KFLKNVLEEGSKLEEFNELELSPEDKELLEYLQQTKAKITVV 43
>pdb|1B54| Crystal Structure Of A Yeast Hypothetical Protein - A Structure
From Bnl's Human Proteome Project
Length = 257
Score = 26.6 bits (57), Expect = 3.6
Identities = 17/104 (16%), Positives = 51/104 (48%), Gaps = 3/104 (2%)
Query: 28 ERANRVVELGIDEVMPNPYQPRKVFSEDSLEELAQSIKEHGLLQPVLVVSENGRYHLIAG 87
E A++++ L + ++ P ++ + + E ++ + L++ ++ ++ ++H I G
Sbjct: 37 ENASKILLLVVSKL--KPASDIQILYDHGVREFGENYVQE-LIEKAKLLPDDIKWHFIGG 93
Query: 88 ERRLRASKLAKMPTIKAIVVDIEQEKMREVALIENIQREDLNPL 131
+ + LAK+P + ++ +K +++ + D NP+
Sbjct: 94 LQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPI 137
>pdb|1CT5|A Chain A, Crystal Structure Of Yeast Hypothetical Protein Ybl036c-
Selenomet Crystal
Length = 256
Score = 26.6 bits (57), Expect = 3.6
Identities = 17/104 (16%), Positives = 51/104 (48%), Gaps = 3/104 (2%)
Query: 28 ERANRVVELGIDEVMPNPYQPRKVFSEDSLEELAQSIKEHGLLQPVLVVSENGRYHLIAG 87
E A++++ L + ++ P ++ + + E ++ + L++ ++ ++ ++H I G
Sbjct: 36 ENASKILLLVVSKL--KPASDIQILYDHGVREFGENYVQE-LIEKAKLLPDDIKWHFIGG 92
Query: 88 ERRLRASKLAKMPTIKAIVVDIEQEKMREVALIENIQREDLNPL 131
+ + LAK+P + ++ +K +++ + D NP+
Sbjct: 93 LQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPI 136
>pdb|1KK7|Y Chain Y, Scallop Myosin In The Near Rigor Conformation
pdb|1L2O|B Chain B, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1WDC|B Chain B, Scallop Myosin Regulatory Domain
pdb|1B7T|Y Chain Y, Myosin Digested By Papain
Length = 156
Score = 26.6 bits (57), Expect = 3.6
Identities = 33/158 (20%), Positives = 65/158 (40%), Gaps = 24/158 (15%)
Query: 112 EKMREVALIENIQREDLNPLELARSYKELLESYQMTQEELSKIVKKSRAHVANIMRLLTL 171
++M+E + ++ R+ E ++ E L +EL+ ++K++ + M L
Sbjct: 18 QEMKEAFSMIDVDRDGFVSKEDIKAISEQL-GRAPDDKELTAMLKEAPGPLNFTMFLSIF 76
Query: 172 SSKVQNALLEEKITSGHAKVLVGLDGEKQELILNSIIGQKLSVRQTEDLARDFKINANFD 231
S K+ EE I + A ++QE +KL++ +DL + N N D
Sbjct: 77 SDKLSGTDSEETIRNAFAMF------DEQET-------KKLNIEYIKDLLENMGDNFNKD 123
Query: 232 NKKHGFKQTQTLIAGDELERLNQSLWDHYKLKAALKGN 269
+ FK+ + +D+ K A +KG+
Sbjct: 124 EMRMTFKEAP----------VEGGKFDYVKFTAMIKGS 151
>pdb|1KK8|B Chain B, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 139
Score = 26.6 bits (57), Expect = 3.6
Identities = 33/158 (20%), Positives = 65/158 (40%), Gaps = 24/158 (15%)
Query: 112 EKMREVALIENIQREDLNPLELARSYKELLESYQMTQEELSKIVKKSRAHVANIMRLLTL 171
++M+E + ++ R+ E ++ E L +EL+ ++K++ + M L
Sbjct: 6 QEMKEAFSMIDVDRDGFVSKEDIKAISEQL-GRAPDDKELTAMLKEAPGPLNFTMFLSIF 64
Query: 172 SSKVQNALLEEKITSGHAKVLVGLDGEKQELILNSIIGQKLSVRQTEDLARDFKINANFD 231
S K+ EE I + A ++QE +KL++ +DL + N N D
Sbjct: 65 SDKLSGTDSEETIRNAFAMF------DEQET-------KKLNIEYIKDLLENMGDNFNKD 111
Query: 232 NKKHGFKQTQTLIAGDELERLNQSLWDHYKLKAALKGN 269
+ FK+ + +D+ K A +KG+
Sbjct: 112 EMRMTFKEAP----------VEGGKFDYVKFTAMIKGS 139
>pdb|1SCM|B Chain B, Myosin (Regulatory Domain)
Length = 145
Score = 26.6 bits (57), Expect = 3.6
Identities = 33/158 (20%), Positives = 65/158 (40%), Gaps = 24/158 (15%)
Query: 112 EKMREVALIENIQREDLNPLELARSYKELLESYQMTQEELSKIVKKSRAHVANIMRLLTL 171
++M+E + ++ R+ E ++ E L +EL+ ++K++ + M L
Sbjct: 7 QEMKEAFSMIDVDRDGFVSKEDIKAISEQL-GRAPDDKELTAMLKEAPGPLNFTMFLSIF 65
Query: 172 SSKVQNALLEEKITSGHAKVLVGLDGEKQELILNSIIGQKLSVRQTEDLARDFKINANFD 231
S K+ EE I + A ++QE +KL++ +DL + N N D
Sbjct: 66 SDKLSGTDSEETIRNAFAMF------DEQET-------KKLNIEYIKDLLENMGDNFNKD 112
Query: 232 NKKHGFKQTQTLIAGDELERLNQSLWDHYKLKAALKGN 269
+ FK+ + +D+ K A +KG+
Sbjct: 113 EMRMTFKEAP----------VEGGKFDYVKFTAMIKGS 140
>pdb|1DFK|Y Chain Y, Nucleotide-Free Scallop Myosin S1-Near Rigor State
pdb|1DFL|W Chain W, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|Y Chain Y, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
Length = 139
Score = 26.2 bits (56), Expect = 4.7
Identities = 33/157 (21%), Positives = 64/157 (40%), Gaps = 24/157 (15%)
Query: 112 EKMREVALIENIQREDLNPLELARSYKELLESYQMTQEELSKIVKKSRAHVANIMRLLTL 171
++M+E + ++ R+ E ++ E L +EL+ ++K++ + M L
Sbjct: 7 QEMKEAFSMIDVDRDGFVSKEDIKAISEQL-GRAPDDKELTAMLKEAPGPLNFTMFLSIF 65
Query: 172 SSKVQNALLEEKITSGHAKVLVGLDGEKQELILNSIIGQKLSVRQTEDLARDFKINANFD 231
S K+ EE I + A ++QE +KL++ +DL + N N D
Sbjct: 66 SDKLSGTDSEETIRNAFAMF------DEQET-------KKLNIEYIKDLLENMGDNFNKD 112
Query: 232 NKKHGFKQTQTLIAGDELERLNQSLWDHYKLKAALKG 268
+ FK+ + +D+ K A +KG
Sbjct: 113 EMRMTFKEAP----------VEGGKFDYVKFTAMIKG 139
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 25.8 bits (55), Expect = 6.1
Identities = 17/90 (18%), Positives = 40/90 (43%), Gaps = 10/90 (11%)
Query: 192 LVGLDGEKQELILNSIIGQKLSVRQTEDLARDFKI----------NANFDNKKHGFKQTQ 241
L+G+ G ++ N ++G S + + + + +++ D++ H K T+
Sbjct: 389 LMGVWGSAFSILFNRVLGVSGSQSRGSTMEEELENITTKHIVSNDSSDSDDESHEPKGTE 448
Query: 242 TLIAGDELERLNQSLWDHYKLKAALKGNKI 271
AG + + NQ+ W H + A + + +
Sbjct: 449 NEDAGSDYQSDNQASWIHRMIMALVSDSAL 478
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34 - A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34 - A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34 - A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 25.8 bits (55), Expect = 6.1
Identities = 20/114 (17%), Positives = 50/114 (43%), Gaps = 10/114 (8%)
Query: 18 INEVYEQGLYERANRVVELGIDEVMPNPYQPRKVFSEDSLEELAQSIKEHGLLQ------ 71
I + + +G++ +A +V L + P P F E L Q ++ L+
Sbjct: 145 ITDSFGKGIWNKA--IVALTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKDAQAS 202
Query: 72 --PVLVVSENGRYHLIAGERRLRASKLAKMPTIKAIVVDIEQEKMREVALIENI 123
PV+++ +GR + + ++ + +A +P + + ++ K + + +N+
Sbjct: 203 DIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVDKNL 256
>pdb|1QH4|A Chain A, Crystal Structure Of Chicken Brain-Type Creatine Kinase At
1.41 Angstrom Resolution
pdb|1QH4|B Chain B, Crystal Structure Of Chicken Brain-Type Creatine Kinase At
1.41 Angstrom Resolution
pdb|1QH4|C Chain C, Crystal Structure Of Chicken Brain-Type Creatine Kinase At
1.41 Angstrom Resolution
pdb|1QH4|D Chain D, Crystal Structure Of Chicken Brain-Type Creatine Kinase At
1.41 Angstrom Resolution
Length = 380
Score = 25.8 bits (55), Expect = 6.1
Identities = 23/87 (26%), Positives = 34/87 (38%), Gaps = 12/87 (13%)
Query: 163 ANIMRLLTLSSKVQNALLEEKITSGHAKVLVGLDGEKQELILNSIIGQKLSVRQTED-LA 221
+N LL + V + + + + H ++ LD + +KL RQT
Sbjct: 3 SNSHNLLKMKYSVDDEYPDLSVHNNHMAKVLTLD-----------LYKKLRDRQTSSGFT 51
Query: 222 RDFKINANFDNKKHGFKQTQTLIAGDE 248
D I DN H F T +AGDE
Sbjct: 52 LDDVIQTGVDNPGHPFIMTVGCVAGDE 78
>pdb|5EAU| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 25.4 bits (54), Expect = 8.0
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 118 ALIENIQREDLNPLE-----LARSYKELLESYQMTQEELSKIVKKSRAHV 162
A + IQR D+N ++ + SYK +L+ Y+ ++ELS R+H+
Sbjct: 315 AYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELS---SAGRSHI 361
>pdb|5EAT| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate
Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 25.4 bits (54), Expect = 8.0
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 118 ALIENIQREDLNPLE-----LARSYKELLESYQMTQEELSKIVKKSRAHV 162
A + IQR D+N ++ + SYK +L+ Y+ ++ELS R+H+
Sbjct: 315 AYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELS---SAGRSHI 361
>pdb|5EAS| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 25.4 bits (54), Expect = 8.0
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 118 ALIENIQREDLNPLE-----LARSYKELLESYQMTQEELSKIVKKSRAHV 162
A + IQR D+N ++ + SYK +L+ Y+ ++ELS R+H+
Sbjct: 315 AYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELS---SAGRSHI 361
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.134 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,476,316
Number of Sequences: 13198
Number of extensions: 56190
Number of successful extensions: 150
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 149
Number of HSP's gapped (non-prelim): 13
length of query: 290
length of database: 2,899,336
effective HSP length: 87
effective length of query: 203
effective length of database: 1,751,110
effective search space: 355475330
effective search space used: 355475330
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)