BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645755|ref|NP_207932.1| methionyl-tRNA
formyltransferase (fmt) [Helicobacter pylori 26695]
(303 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|2FMT|A Chain A, Methionyl-Trnafmet Formyltransferase Co... 163 2e-41
pdb|1C3E|A Chain A, New Insights Into Inhibitor Design From... 39 0.001
pdb|3GAR| A Ph-Dependent Stablization Of An Active Site L... 39 0.001
pdb|1CDD|A Chain A, Phosphoribosylglycinamide Formyltransfe... 39 0.001
pdb|1JKX|A Chain A, Unexpected Formation Of An Epoxide-Deri... 39 0.001
pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb... 30 0.44
pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fuse... 30 0.44
pdb|1FJX|A Chain A, Structure Of Ternary Complex Of Hhai Me... 26 4.9
pdb|1M0E|A Chain A, Zebularine: A Novel Dna Methylation Inh... 26 4.9
pdb|1K7S|N Chain N, Fhud Complexed With Albomycin-Delta 2 25 8.4
pdb|1QKU|A Chain A, Wild Type Estrogen Nuclear Receptor Lig... 25 8.4
pdb|1GWQ|A Chain A, Human Oestrogen Receptor Alpha Ligand-B... 25 8.4
pdb|1L2I|B Chain B, Human Estrogen Receptor Alpha Ligand-Bi... 25 8.4
pdb|1IW7|D Chain D, Crystal Structure Of The Rna Polymerase... 25 8.4
pdb|1EFD|N Chain N, Periplasmic Ferric Siderophore Binding ... 25 8.4
pdb|1ERE|A Chain A, Human Estrogen Receptor Ligand-Binding ... 25 8.4
pdb|1G50|A Chain A, Crystal Structure Of A Wild Type Her Al... 25 8.4
pdb|3ERT|A Chain A, Human Estrogen Receptor Alpha Ligand-Bi... 25 8.4
pdb|1ESZ|A Chain A, Structure Of The Periplasmic Ferric Sid... 25 8.4
pdb|1GWR|A Chain A, Human Oestrogen Receptor Alpha Ligand-B... 25 8.4
>pdb|2FMT|A Chain A, Methionyl-Trnafmet Formyltransferase Complexed With
Formyl-Methionyl-Trnafmet
pdb|2FMT|B Chain B, Methionyl-Trnafmet Formyltransferase Complexed With
Formyl-Methionyl-Trnafmet
pdb|1FMT|A Chain A, Methionyl-Trnafmet Formyltransferase From Escherichia Coli
pdb|1FMT|B Chain B, Methionyl-Trnafmet Formyltransferase From Escherichia Coli
Length = 314
Score = 163 bits (413), Expect = 2e-41
Identities = 111/304 (36%), Positives = 167/304 (54%), Gaps = 12/304 (3%)
Query: 1 MRIVFMGTPGFAEVILRALVGDKDIEVVGLFTQMDKPFGRKKELKAPETKTYILENHLNI 60
+RI+F GTP FA L AL+ VVG+FTQ D+P GR K+L K +L +
Sbjct: 4 LRIIFAGTPDFAARHLDALLSSGH-NVVGVFTQPDRPAGRGKKLMPSPVK--VLAEEKGL 60
Query: 61 PIFQPQSLKEPE-VQILKDLKPNFIVVVAYGKILPKEVLTIAP--CINLHASLLPKYRGA 117
P+FQP SL+ E Q++ +L+ + +VVVAYG ILPK VL + CIN+H SLLP++RGA
Sbjct: 61 PVFQPVSLRPQENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGA 120
Query: 118 SPIHEMILNDNKIYGISTMLMDVELDSGDILESASFLREDYLDLDALSLKLAHMGAALLL 177
+PI + + G++ M MDV LD+GD+L S L KLA +G L+
Sbjct: 121 APIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAEDTSGTLYDKLAELGPQGLI 180
Query: 178 STLKNFSSITRKS--QDHMQASFCKKITKSDGLVGFK-DAKSLFLKSLAFKSWPEIFLE- 233
+TLK + T K QD ++ +K++K + + + A L AF WP +LE
Sbjct: 181 TTLKQLADGTAKPEVQDETLVTYAEKLSKEEARIDWSLSAAQLERCIRAFNPWPMSWLEI 240
Query: 234 --NGLKLLEVELVENEKSHKEGEILEIDEKGVLVGCLKGSVRIARLQAVGKKPLKAKDYL 291
+K+ + +++ + G ILE +++G+ V G + + LQ GKK + A+D L
Sbjct: 241 EGQPVKVWKASVIDTATNAAPGTILEANKQGIQVATGDGILNLLSLQPAGKKAMSAQDLL 300
Query: 292 NGKR 295
N +R
Sbjct: 301 NSRR 304
>pdb|1C3E|A Chain A, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylate
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid.
pdb|1C3E|B Chain B, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylate
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid
Length = 209
Score = 38.5 bits (88), Expect = 0.001
Identities = 21/73 (28%), Positives = 38/73 (51%), Gaps = 2/73 (2%)
Query: 81 PNFIVVVAYGKILPKEVLT--IAPCINLHASLLPKYRGASPIHEMILNDNKIYGISTMLM 138
P+ +V+ + +IL ++ +N+H SLLPKY G + + N ++ +G S +
Sbjct: 80 PDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFV 139
Query: 139 DVELDSGDILESA 151
ELD G ++ A
Sbjct: 140 TDELDGGPVILQA 152
>pdb|3GAR| A Ph-Dependent Stablization Of An Active Site Loop Observed From
Low And High Ph Crystal Structures Of Mutant Monomeric
Glycinamide Ribonucleotide Transformylase
pdb|2GAR| A Ph-Dependent Stablization Of An Active Site Loop Observed From
Low And High Ph Crystal Structures Of Mutant Monomeric
Glycinamide Ribonucleotide Transformylase
Length = 212
Score = 38.5 bits (88), Expect = 0.001
Identities = 21/73 (28%), Positives = 38/73 (51%), Gaps = 2/73 (2%)
Query: 81 PNFIVVVAYGKILPKEVLT--IAPCINLHASLLPKYRGASPIHEMILNDNKIYGISTMLM 138
P+ +V+ + +IL ++ +N+H SLLPKY G + + N ++ +G S +
Sbjct: 80 PDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFV 139
Query: 139 DVELDSGDILESA 151
ELD G ++ A
Sbjct: 140 TDELDGGPVILQA 152
>pdb|1CDD|A Chain A, Phosphoribosylglycinamide Formyltransferase (E.C.2.1.2.2)
(5'-Phosphoribosylglycinamide Transformylase)
pdb|1CDD|B Chain B, Phosphoribosylglycinamide Formyltransferase (E.C.2.1.2.2)
(5'-Phosphoribosylglycinamide Transformylase)
Length = 212
Score = 38.5 bits (88), Expect = 0.001
Identities = 21/73 (28%), Positives = 38/73 (51%), Gaps = 2/73 (2%)
Query: 81 PNFIVVVAYGKILPKEVLT--IAPCINLHASLLPKYRGASPIHEMILNDNKIYGISTMLM 138
P+ +V+ + +IL ++ +N+H SLLPKY G + + N ++ +G S +
Sbjct: 80 PDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFV 139
Query: 139 DVELDSGDILESA 151
ELD G ++ A
Sbjct: 140 TDELDGGPVILQA 152
>pdb|1JKX|A Chain A, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1JKX|B Chain B, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1JKX|C Chain C, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1JKX|D Chain D, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1C2T|A Chain A, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylase
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid.
pdb|1C2T|B Chain B, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylase
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid.
pdb|1CDE| Phosphoribosylglycinamide Formyltransferase (E.C.2.1.2.2)
(5'-Phosphoribosylglycinamide Transformylase) Complex
With Glycinamide Ribonucleotide And The Inhibitor
5-Deaza-5,6,7,8-Tetrahydrofolate
pdb|1GAR|A Chain A, Glycinamide Ribonucleotide Transformylase
(10-Formyltetrahydrofolate-5'-Phosphoribosylglycinamide
Formyltransferase) (E.C.2.1.2.2) Complexed With
Burroughs-Wellcome Inhibitor 1476u89
pdb|1GAR|B Chain B, Glycinamide Ribonucleotide Transformylase
(10-Formyltetrahydrofolate-5'-Phosphoribosylglycinamide
Formyltransferase) (E.C.2.1.2.2) Complexed With
Burroughs-Wellcome Inhibitor 1476u89
pdb|1GRC|A Chain A, Glycinamide Ribonucleotide Transformylase (E.C.2.1.2.2)
pdb|1GRC|B Chain B, Glycinamide Ribonucleotide Transformylase (E.C.2.1.2.2)
Length = 212
Score = 38.5 bits (88), Expect = 0.001
Identities = 21/73 (28%), Positives = 38/73 (51%), Gaps = 2/73 (2%)
Query: 81 PNFIVVVAYGKILPKEVLT--IAPCINLHASLLPKYRGASPIHEMILNDNKIYGISTMLM 138
P+ +V+ + +IL ++ +N+H SLLPKY G + + N ++ +G S +
Sbjct: 80 PDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFV 139
Query: 139 DVELDSGDILESA 151
ELD G ++ A
Sbjct: 140 TDELDGGPVILQA 152
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 29.6 bits (65), Expect = 0.44
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 16 LRALVGDKDIEVVGLFTQ--MDKPFGRKKELKAPET 49
LRAL G K+++V+ LF+Q ++KP + L P T
Sbjct: 190 LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 225
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 29.6 bits (65), Expect = 0.44
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 16 LRALVGDKDIEVVGLFTQ--MDKPFGRKKELKAPET 49
LRAL G K+++V+ LF+Q ++KP + L P T
Sbjct: 193 LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 228
>pdb|1FJX|A Chain A, Structure Of Ternary Complex Of Hhai Methyltransferase
Mutant (T250g) In Complex With Dna And Adohcy
Length = 327
Score = 26.2 bits (56), Expect = 4.9
Identities = 21/73 (28%), Positives = 33/73 (44%), Gaps = 6/73 (8%)
Query: 187 TRKSQDHMQASF-CKKITKSDGLVGFKDAKSLFLKSLAFKSWPEIFLENGLKLLEVELVE 245
T D + A F C+ + S GF+D++ +A I E K++ +E V+
Sbjct: 68 TIPDHDILCAGFPCQAFSISGKQKGFEDSRGTLFFDIA-----RIVREKKPKVVFMENVK 122
Query: 246 NEKSHKEGEILEI 258
N SH G LE+
Sbjct: 123 NFASHDNGNTLEV 135
>pdb|1M0E|A Chain A, Zebularine: A Novel Dna Methylation Inhibitor That Forms A
Covalent Complex With Dna Methyltransferase
pdb|6MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
And Dna Containing 4'-Thio-2'deoxycytidine At The Target
pdb|9MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
pdb|1HMY| Hhai Dna (Cytosine-C5-)-Methyltransferase (E.C.2.1.1.37) Complex
With S-Adenosyl-L-Methionine
pdb|10MH|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
And Hemimethylated Dna Containing
5,6-Dihydro-5-Azacytosine At The Target
pdb|2HMY|B Chain B, Binary Complex Of Hhai Methyltransferase With Adomet
Formed In The Presence Of A Short Nonpsecific Dna
Oligonucleotide
pdb|4MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Native
Dna And Adohcy
pdb|3MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
Unmodified Dna And Adohcy
pdb|5MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
Hemimethylated Dna And Adohcy
pdb|8MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
pdb|1MHT|A Chain A, Covalent Ternary Structure Of Hhai Methyltransferase, Dna
And S-Adenosyl-L-Homocysteine
pdb|7MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
Length = 327
Score = 26.2 bits (56), Expect = 4.9
Identities = 21/73 (28%), Positives = 33/73 (44%), Gaps = 6/73 (8%)
Query: 187 TRKSQDHMQASF-CKKITKSDGLVGFKDAKSLFLKSLAFKSWPEIFLENGLKLLEVELVE 245
T D + A F C+ + S GF+D++ +A I E K++ +E V+
Sbjct: 68 TIPDHDILCAGFPCQAFSISGKQKGFEDSRGTLFFDIA-----RIVREKKPKVVFMENVK 122
Query: 246 NEKSHKEGEILEI 258
N SH G LE+
Sbjct: 123 NFASHDNGNTLEV 135
>pdb|1K7S|N Chain N, Fhud Complexed With Albomycin-Delta 2
Length = 265
Score = 25.4 bits (54), Expect = 8.4
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 70 EPEVQILKDLKPNFIVVVAYGKILPKEVLTIAP 102
EP +++L ++KP+F+V A P+ + IAP
Sbjct: 55 EPNLELLTEMKPSFMVWSAGYGPSPEMLARIAP 87
>pdb|1QKU|A Chain A, Wild Type Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
pdb|1QKU|B Chain B, Wild Type Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
pdb|1QKU|C Chain C, Wild Type Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
Length = 250
Score = 25.4 bits (54), Expect = 8.4
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 164 LSLKLAHMGAALLLSTLKNFSSITRKSQDHMQASFCKKI 202
L+L+ H A LL L + ++ K +H+ + CK +
Sbjct: 195 LTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKNV 233
>pdb|1GWQ|A Chain A, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With Raloxifene Core And Tif2 Nrbox2 Peptide
pdb|1GWQ|B Chain B, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With Raloxifene Core And Tif2 Nrbox2 Peptide
Length = 248
Score = 25.4 bits (54), Expect = 8.4
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 164 LSLKLAHMGAALLLSTLKNFSSITRKSQDHMQASFCKKI 202
L+L+ H A LL L + ++ K +H+ + CK +
Sbjct: 195 LTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKNV 233
>pdb|1L2I|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With (R,R)-5,11-Cis-Diethyl-5,6,11,12-
Tetrahydrochrysene-2,8-Diol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
pdb|1L2I|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With (R,R)-5,11-Cis-Diethyl-5,6,11,12-
Tetrahydrochrysene-2,8-Diol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
Length = 261
Score = 25.4 bits (54), Expect = 8.4
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 164 LSLKLAHMGAALLLSTLKNFSSITRKSQDHMQASFCKKI 202
L+L+ H A LL L + ++ K +H+ + CK +
Sbjct: 202 LTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKNV 240
>pdb|1IW7|D Chain D, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|N Chain N, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
Length = 1524
Score = 25.4 bits (54), Expect = 8.4
Identities = 13/42 (30%), Positives = 24/42 (56%), Gaps = 4/42 (9%)
Query: 56 NHLNIPIFQPQSLKEPEVQILKDLKPNFIVVVAYGKILPKEV 97
N++++P+FQP + + L+ K I YG++L +EV
Sbjct: 1116 NYISVPLFQPDEV----TRSLRLRKRADIEAGLYGRVLAREV 1153
>pdb|1EFD|N Chain N, Periplasmic Ferric Siderophore Binding Protein Fhud
Complexed With Gallichrome
Length = 266
Score = 25.4 bits (54), Expect = 8.4
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 70 EPEVQILKDLKPNFIVVVAYGKILPKEVLTIAP 102
EP +++L ++KP+F+V A P+ + IAP
Sbjct: 56 EPNLELLTEMKPSFMVWSAGYGPSPEMLARIAP 88
>pdb|1ERE|A Chain A, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|B Chain B, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|C Chain C, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|D Chain D, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|E Chain E, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|F Chain F, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERR|A Chain A, Human Estrogen Receptor Ligand-Binding Domain In Complex
With Raloxifene
pdb|1ERR|B Chain B, Human Estrogen Receptor Ligand-Binding Domain In Complex
With Raloxifene
Length = 253
Score = 25.4 bits (54), Expect = 8.4
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 164 LSLKLAHMGAALLLSTLKNFSSITRKSQDHMQASFCKKI 202
L+L+ H A LL L + ++ K +H+ + CK +
Sbjct: 195 LTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKNV 233
>pdb|1G50|A Chain A, Crystal Structure Of A Wild Type Her Alpha Lbd At 2.9
Angstrom Resolution
pdb|1G50|B Chain B, Crystal Structure Of A Wild Type Her Alpha Lbd At 2.9
Angstrom Resolution
pdb|1G50|C Chain C, Crystal Structure Of A Wild Type Her Alpha Lbd At 2.9
Angstrom Resolution
Length = 247
Score = 25.4 bits (54), Expect = 8.4
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 164 LSLKLAHMGAALLLSTLKNFSSITRKSQDHMQASFCKKI 202
L+L+ H A LL L + ++ K +H+ + CK +
Sbjct: 192 LTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKNV 230
>pdb|3ERT|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 4-Hydroxytamoxifen
pdb|3ERD|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Diethylstilbestrol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
pdb|3ERD|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Diethylstilbestrol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
Length = 261
Score = 25.4 bits (54), Expect = 8.4
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 164 LSLKLAHMGAALLLSTLKNFSSITRKSQDHMQASFCKKI 202
L+L+ H A LL L + ++ K +H+ + CK +
Sbjct: 202 LTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKNV 240
>pdb|1ESZ|A Chain A, Structure Of The Periplasmic Ferric Siderophore Binding
Protein Fhud Complexed With Coprogen
pdb|1K2V|N Chain N, E. Coli Periplasmic Protein Fhud Complexed With Desferal
Length = 266
Score = 25.4 bits (54), Expect = 8.4
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 70 EPEVQILKDLKPNFIVVVAYGKILPKEVLTIAP 102
EP +++L ++KP+F+V A P+ + IAP
Sbjct: 56 EPNLELLTEMKPSFMVWSAGYGPSPEMLARIAP 88
>pdb|1GWR|A Chain A, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17beta-Oestradiol And Tif2 Nrbox3 Peptide
pdb|1GWR|B Chain B, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17beta-Oestradiol And Tif2 Nrbox3 Peptide
Length = 245
Score = 25.4 bits (54), Expect = 8.4
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 164 LSLKLAHMGAALLLSTLKNFSSITRKSQDHMQASFCKKI 202
L+L+ H A LL L + ++ K +H+ + CK +
Sbjct: 191 LTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKNV 229
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.139 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,651,944
Number of Sequences: 13198
Number of extensions: 66933
Number of successful extensions: 118
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 97
Number of HSP's gapped (non-prelim): 20
length of query: 303
length of database: 2,899,336
effective HSP length: 88
effective length of query: 215
effective length of database: 1,737,912
effective search space: 373651080
effective search space used: 373651080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)