BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645757|ref|NP_207934.1| hypothetical protein
[Helicobacter pylori 26695]
(433 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 55 1e-08
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 50 5e-07
pdb|2TMA|A Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain... 49 8e-07
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Co... 44 4e-05
pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta >g... 40 5e-04
pdb|1F1M|A Chain A, Crystal Structure Of Outer Surface Prot... 36 0.010
pdb|1D7M|A Chain A, Coiled-Coil Dimerization Domain From Co... 35 0.016
pdb|1IK9|A Chain A, Crystal Structure Of A Xrcc4-Dna Ligase... 33 0.063
pdb|1DEQ|A Chain A, The Crystal Structure Of Modified Bovin... 32 0.11
pdb|1GE9|A Chain A, Solution Structure Of The Ribosome Recy... 31 0.24
pdb|1JSM|B Chain B, Structure Of H5 Avian Haemagglutinin >g... 31 0.24
pdb|1FU1|B Chain B, Crystal Structure Of Human Xrcc4 >gi|12... 31 0.24
pdb|1L4A|E Chain E, X-Ray Structure Of The Neuronal Complex... 30 0.41
pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And F... 30 0.41
pdb|1AV1|A Chain A, Crystal Structure Of Human Apolipoprote... 30 0.41
pdb|1FXK|B Chain B, Crystal Structure Of Archaeal Prefoldin... 30 0.69
pdb|1L7N|A Chain A, Transition State Analogue Of Phosphoser... 29 1.2
pdb|1L7O|A Chain A, Crystal Structure Of Phosphoserine Phos... 29 1.2
pdb|1L6N|A Chain A, Structure Of The N-Terminal 283-Residue... 29 1.2
pdb|1FXK|A Chain A, Crystal Structure Of Archaeal Prefoldin... 28 1.5
pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phos... 28 1.5
pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue ... 28 1.5
pdb|1MC8|A Chain A, Crystal Structure Of Flap Endonuclease-... 28 2.0
pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 28 2.0
pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomeras... 28 2.0
pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 28 2.0
pdb|1CXZ|B Chain B, Crystal Structure Of Human Rhoa Complex... 28 2.6
pdb|1E4U|A Chain A, N-Terminal Ring Finger Domain Of Human ... 27 3.4
pdb|1IRM|A Chain A, Crystal Structure Of Apo Heme Oxygenase... 27 3.4
pdb|1L9U|D Chain D, Thermus Aquaticus Rna Polymerase Holoen... 27 3.4
pdb|1L9Z|H Chain H, Thermus Aquaticus Rna Polymerase Holoen... 27 3.4
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor >gi|1697482... 27 4.5
pdb|1DVG|A Chain A, Crystal Structure Of Rat Heme Oxygenase... 27 4.5
pdb|1EH1|A Chain A, Ribosome Recycling Factor From Thermus ... 27 4.5
pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Bind... 27 4.5
pdb|1A7V|A Chain A, Cytochrome C' From Rhodopseudomonas Pal... 27 5.9
pdb|1IU4|A Chain A, Crystal Structure Analysis Of The Micro... 27 5.9
pdb|1JF0|A Chain A, The Crystal Structure Of Obelin From Ob... 27 5.9
pdb|1TF6|D Chain D, Co-Crystal Structure Of Xenopus Tfiiia ... 27 5.9
pdb|1EUO|A Chain A, Crystal Structure Of Nitrophorin 2 (Pro... 26 7.6
pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer 26 7.6
pdb|1QSD|A Chain A, Rbl2p, Beta-Tubulin Binding Post-Chaper... 26 7.6
pdb|1KVN|A Chain A, Solution Structure Of Protein Srp19 Of ... 26 7.6
pdb|1FZP|B Chain B, Crystal Structures Of Sara: A Pleiotrop... 26 7.6
pdb|1GO4|E Chain E, Crystal Structure Of Mad1-Mad2 Reveals ... 26 10.0
pdb|1CZT|A Chain A, Crystal Structure Of The C2 Domain Of H... 26 10.0
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 55.5 bits (132), Expect = 1e-08
Identities = 78/302 (25%), Positives = 131/302 (42%), Gaps = 44/302 (14%)
Query: 125 SKQVQELHQKEAEIERLKRENNEAESRLK---------AENEKKLNEKLDLEREKIEKAL 175
++Q +E+ K+ E++R K +AE+ LK E + L EKL E E +A
Sbjct: 853 TRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAE 912
Query: 176 HEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQQFQGE-----------VQELAIEEFL 224
+ L K+QE LE + +E++ + E SQQ Q E ++L EE
Sbjct: 913 EMRVRLAAKKQE--LEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970
Query: 225 RQKFPLDCIEEIKKGQRGGDCIQVVHTREFQNCGKIYYESK------------RTKEFQK 272
RQK L+ + K ++ D I ++ E QN K+ E K +E +K
Sbjct: 971 RQKLQLEKVTADGKIKKMEDDILIM---EDQN-NKLTKERKLLEERVSDLTTNLAEEEEK 1026
Query: 273 AW-VEKLKSDMREIGADVGVIV--SEALPKEMERM-GLFEGVWVCSFEEFKGLSAVLREG 328
A + KLK+ + +++ V + E +E+E++ EG E+ L A + E
Sbjct: 1027 AKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE- 1085
Query: 329 VIQVSLAKKSQENKGDKVNLLYHYLTSSEFSMQVNVIIEGFEQLRADLESEKRAMARIWK 388
++ LAKK +E + L + ++ + L+ DLESEK A + K
Sbjct: 1086 -LKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEK 1144
Query: 389 SR 390
+
Sbjct: 1145 QK 1146
Score = 44.3 bits (103), Expect = 3e-05
Identities = 52/225 (23%), Positives = 95/225 (42%), Gaps = 50/225 (22%)
Query: 44 EKEVNEKRAQYLSYFKNLEQKEET-LKEREK------EQQAKFDEAVKQASALALQDERA 96
++E + + + L K +QK E LKE E+ E++ E ++ + L + E
Sbjct: 855 QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEM 914
Query: 97 KIIEEARKNAFLEQQKGLELLQKELDEKSKQVQ---------------ELHQKEAEIERL 141
++ A+K E +E +E +E+S+Q+Q +L ++EA ++L
Sbjct: 915 RVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKL 974
Query: 142 KRENNEAESRLKAENEKKL-----NEKLDLEREKIEKALHE------------KNELKFK 184
+ E A+ ++K + L N KL ER+ +E+ + + KN K K
Sbjct: 975 QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLK 1034
Query: 185 QQEEQL-----------EMLRNELKNAQRKAELSSQQFQGEVQEL 218
+ E + E R EL+ +RK E S ++ EL
Sbjct: 1035 NKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAEL 1079
Score = 42.4 bits (98), Expect = 1e-04
Identities = 50/189 (26%), Positives = 92/189 (48%), Gaps = 37/189 (19%)
Query: 28 IEQENQNKFLAQQKEFEKEVN---------EKRAQYLSYFKN-----LEQKEETLKEREK 73
I ++ NK ++K E+ V+ E++A+ L+ KN + + E LK+ EK
Sbjct: 994 IMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEK 1053
Query: 74 EQQAKFDEAVKQASALALQDERAKIIEEARKNAFLEQQKGLELLQKELDEKSKQVQELHQ 133
+Q E +K+ L+ E + + E+ E Q + L+ +L +K +++Q
Sbjct: 1054 SRQEL--EKIKRK----LEGESSDLHEQ-----IAELQAQIAELKAQLAKKEEELQ---- 1098
Query: 134 KEAEIERLKRENNEAESRLKA--ENEKKLNE-KLDLEREKIEKALHEKNELKFKQQEEQL 190
A + RL+ E ++ + LK E E +++ + DLE EKA K E + + E+L
Sbjct: 1099 --AALARLEDETSQKNNALKKIRELESHISDLQEDLES---EKAARNKAEKQKRDLSEEL 1153
Query: 191 EMLRNELKN 199
E L+ EL++
Sbjct: 1154 EALKTELED 1162
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 50.1 bits (118), Expect = 5e-07
Identities = 65/251 (25%), Positives = 116/251 (45%), Gaps = 56/251 (22%)
Query: 26 KQIEQEN---QNKFLAQQKEFEKEVNEKRAQYLSYFKNLEQKEETLKEREKEQQAK---- 78
KQ+E E Q K A + E +K Y K+ ++K E +++ + +A
Sbjct: 37 KQLEDELVSLQKKLKATEDELDK--------YSEALKDAQEKLELAEKKATDAEADVASL 88
Query: 79 ------FDEAVKQAS---ALALQDERAKIIEEARKNAFLEQQKGLELLQK--ELDEKSKQ 127
F+E + +A A ALQ +EEA K A E ++G+++++ + DE+ +
Sbjct: 89 NRRIQLFEEELDRAQERLATALQK-----LEEAEKAAD-ESERGMKVIESRAQKDEEKME 142
Query: 128 VQELHQKEAE--IERLKRENNEAESRL--------KAENEKKLNEK--LDLERE------ 169
+QE+ KEA+ E R+ E +L +AE +L+E +LE E
Sbjct: 143 IQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTN 202
Query: 170 --KIEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQ---QFQGEVQELAIEEFL 224
K +A EK K + EE++++L ++LK A+ +AE + + + + + +L +E
Sbjct: 203 NLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLE-DELY 261
Query: 225 RQKFPLDCIEE 235
QK I E
Sbjct: 262 AQKLKYKAISE 272
>pdb|2TMA|A Chain A, Tropomyosin
pdb|2TMA|B Chain B, Tropomyosin
Length = 284
Score = 49.3 bits (116), Expect = 8e-07
Identities = 63/252 (25%), Positives = 116/252 (46%), Gaps = 55/252 (21%)
Query: 38 AQQKEFEKEVNEKRAQYL-----SYFKNLEQKEETL---KEREKEQQAKFDEAVKQASA- 88
A+Q E +K+ E R++ L S K L+ E+ L E K+ Q K + A K+A+
Sbjct: 22 AEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDA 81
Query: 89 ---LALQDERAKIIEEA-----------------RKNAFLEQQKGLELLQK--ELDEKSK 126
+A + R +++EE + A E ++G+++++ + DE+
Sbjct: 82 EADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKM 141
Query: 127 QVQELHQKEAE--IERLKRENNEAESRL--------KAENEKKLNEK--LDLERE----- 169
++QE+ KEA+ E R+ E +L +AE +L+E +LE E
Sbjct: 142 EIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVT 201
Query: 170 ---KIEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQ---QFQGEVQELAIEEF 223
K +A EK K + EE++++L ++LK A+ +AE + + + + + +L +E
Sbjct: 202 NNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLE-DEL 260
Query: 224 LRQKFPLDCIEE 235
QK I E
Sbjct: 261 YAQKLKYKAISE 272
>pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp.
pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
Length = 592
Score = 43.9 bits (102), Expect = 4e-05
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 40/148 (27%)
Query: 91 LQDERAKIIEEARKNAFLEQQKGLELLQKELDEKSKQVQELHQ---------KEAEIERL 141
LQD + K EE RK E E+LQ L K + Q KE E+ER+
Sbjct: 440 LQDLKKKYYEEPRKGIQAE-----EILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERV 494
Query: 142 KRENNEAESRLKAENEKK------------------LNEKLDLEREKIEKALHEKNELKF 183
K E+ +A +++ E ++K L EK++ +R ++ K LK
Sbjct: 495 KAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKL 554
Query: 184 KQQEEQLE--------MLRNELKNAQRK 203
++QE+ L+ +++NE+++ Q K
Sbjct: 555 QEQEQLLKEGFQKESRIMKNEIQDLQTK 582
Score = 35.4 bits (80), Expect = 0.013
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 19/114 (16%)
Query: 63 QKEETLKEREKEQQAKFDEAVKQASALALQDERAKIIEE-ARKNAFLEQQKGLELLQ--K 119
Q ++TL E+EKE + E VK SA A AK++ E RKN + +QK + K
Sbjct: 477 QTDQTLTEKEKEIEV---ERVKAESAQA----SAKMLHEMQRKNEQMMEQKERSYQEHLK 529
Query: 120 ELDEK--SKQVQELHQKE-------AEIERLKRENNEAESRLKAENEKKLNEKL 164
+L EK + +VQ L ++E E E+L +E + ESR+ + L K+
Sbjct: 530 QLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKM 583
Score = 31.6 bits (70), Expect = 0.18
Identities = 21/100 (21%), Positives = 56/100 (56%), Gaps = 6/100 (6%)
Query: 40 QKEFEKEVNEKRAQYL-SYFKNLEQKEETLKEREKEQQAKFDEAVKQASALALQDERAKI 98
+KE E EV +A+ + K L + + ++ ++++ + E +KQ + ++++R ++
Sbjct: 484 EKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTE-KMENDRVQL 542
Query: 99 IEEARKNAFLEQQKGLELLQKELDEKSK----QVQELHQK 134
++E + L+ Q+ +LL++ ++S+ ++Q+L K
Sbjct: 543 LKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 582
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 40.0 bits (92), Expect = 5e-04
Identities = 47/214 (21%), Positives = 98/214 (44%), Gaps = 33/214 (15%)
Query: 41 KEFEKEVNEKRAQYLS----------YFKNLEQKEETLKEREKEQQA----KFDEAVKQA 86
KE E++ +++R + L Y + L+ + LKER + + ++ + +++
Sbjct: 42 KELERKGSKRREELLQKYSVLFLEPVYPRGLDSQVVELKERLEXELIHLGEEYHDGIRRR 101
Query: 87 SALALQDERAKIIEEARKNAFLE-------QQKGLELLQKELDEKSKQVQELHQK----E 135
++ AKI E AR+ E + ++ ++K+L+ K ++ + +
Sbjct: 102 KEQHATEQTAKITELAREKQIAELKALKESSESNIKDIKKKLEAKRLDRIQVXXRSTSDK 161
Query: 136 AEIERLKRENNEAESRLKAENEKKLNEKLDLEREKIEKALHEKNELKFKQQEEQLEMLRN 195
A ERLK+E N + + + K L EK ++K+E+ E N +++E QL+
Sbjct: 162 AAQERLKKEINNSHIQEVVQTIKLLTEKTARYQQKLEEKQAE-NLRAIQEKEGQLQ---- 216
Query: 196 ELKNAQRKAELSSQQFQGEVQELAIEEFLRQKFP 229
+ A + E + EVQE ++ + ++ FP
Sbjct: 217 --QEAVAEYEEKLKTLTVEVQE-XVKNYXKEVFP 247
>pdb|1F1M|A Chain A, Crystal Structure Of Outer Surface Protein C (Ospc)
pdb|1F1M|B Chain B, Crystal Structure Of Outer Surface Protein C (Ospc)
pdb|1F1M|C Chain C, Crystal Structure Of Outer Surface Protein C (Ospc)
pdb|1F1M|D Chain D, Crystal Structure Of Outer Surface Protein C (Ospc)
Length = 164
Score = 35.8 bits (81), Expect = 0.010
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 20/149 (13%)
Query: 82 AVKQASALALQ-DERAKII-----------EEARKNAFLEQQKGLELLQKELDEKSKQVQ 129
AVK+ L DE AK I EA N L G L+ + +K ++
Sbjct: 21 AVKEVETLLTSIDELAKAIGKKIKSDVSLDNEADHNGSL--MSGAYLISTLITKKISAIK 78
Query: 130 ELHQKEAEIERLKRENNEAESRLKAENEKKLNEKLDLEREKIEKALHEKNELKFKQQEEQ 189
+ + +AEIE+ K+ + E ++LK E+ E + + K KA+ + N K K +E
Sbjct: 79 DSGELKAEIEKAKKCSEEFTAKLKGEHTDLGKEGVTDDNAK--KAILKTNNDKTKGADE- 135
Query: 190 LEMLRNELKNAQRKAELSSQQFQGEVQEL 218
LE L +KN + A+ + V+EL
Sbjct: 136 LEKLFESVKNLSKAAK---EMLTNSVKEL 161
>pdb|1D7M|A Chain A, Coiled-Coil Dimerization Domain From Cortexillin I
pdb|1D7M|B Chain B, Coiled-Coil Dimerization Domain From Cortexillin I
Length = 101
Score = 35.0 bits (79), Expect = 0.016
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 37 LAQQKEFEKEVNEKRAQYLSYFKNLEQKEETLKEREKEQQAKFDEAVK--QASALALQDE 94
L +K +++ +++ Q S +LE + ++R +E +AK DE +K + LA +
Sbjct: 13 LESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLELEKLARMEL 72
Query: 95 RAKIIEEARKNAFLEQQKGLELLQKELDEKSK 126
A++ + + A LE + L + +DEKSK
Sbjct: 73 EARLAKTEKDRAILELK-----LAEAIDEKSK 99
Score = 31.2 bits (69), Expect = 0.24
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 113 GLE-LLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAENEKKLNEKL-DLEREK 170
GLE L+ E + + +++ Q + + L+ E E E RL+ E E KL+E L +LE EK
Sbjct: 8 GLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLR-ELEAKLDETLKNLELEK 66
Query: 171 IEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAE 205
+ + E K ++ LE+ E + + K E
Sbjct: 67 LARMELEARLAKTEKDRAILELKLAEAIDEKSKLE 101
Score = 27.3 bits (59), Expect = 3.4
Identities = 20/61 (32%), Positives = 34/61 (54%), Gaps = 4/61 (6%)
Query: 109 EQQKGLELLQKELDE--KSKQVQELHQKEAEIERLKRENNEAESRLKAENEKKLNEKLDL 166
E++K L L+ +LDE K+ ++++L + E E K E + A LK + ++EK L
Sbjct: 43 EREKRLRELEAKLDETLKNLELEKLARMELEARLAKTEKDRAILELKL--AEAIDEKSKL 100
Query: 167 E 167
E
Sbjct: 101 E 101
>pdb|1IK9|A Chain A, Crystal Structure Of A Xrcc4-Dna Ligase Iv Complex
pdb|1IK9|B Chain B, Crystal Structure Of A Xrcc4-Dna Ligase Iv Complex
Length = 213
Score = 33.1 bits (74), Expect = 0.063
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 115 ELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAENEKKLNEKLDLEREKIEKA 174
EL+ LD ++ + + E ERL R+ N+ + R EK +E +E
Sbjct: 125 ELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRF---------EKAVSAKEALETD 175
Query: 175 LHEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQQ 210
L+++ L +++ ++ L N+L NA ++ E +Q
Sbjct: 176 LYKRFILVLNEKKTKIRSLHNKLLNAAQEREKDIKQ 211
>pdb|1DEQ|A Chain A, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|D Chain D, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|N Chain N, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|Q Chain Q, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
Length = 390
Score = 32.3 bits (72), Expect = 0.11
Identities = 32/153 (20%), Positives = 62/153 (39%), Gaps = 24/153 (15%)
Query: 41 KEFEKEVNEKRAQYLSYFKNLEQKEETLKEREKEQQAKFDEAVKQASALALQDERAKIIE 100
++F +N+ R +Y KN + K + + F +A + +E +
Sbjct: 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRI 122
Query: 101 EARKNAFLEQQKGLELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAENEKKL 160
E + +EQ + + LLQK + + Q+ ++ + E +I+ R K + L
Sbjct: 123 EILRRKVIEQVQRINLLQKNVRD---QLVDMKRLEVDIDIKIRS-------CKGSCSRAL 172
Query: 161 NEKLDLEREKIEKALHEKNELKFKQQEEQLEML 193
K+DLE +K Q++QLE +
Sbjct: 173 EHKVDLE--------------DYKNQQKQLEQV 191
>pdb|1GE9|A Chain A, Solution Structure Of The Ribosome Recycling Factor
Length = 184
Score = 31.2 bits (69), Expect = 0.24
Identities = 27/88 (30%), Positives = 44/88 (49%), Gaps = 5/88 (5%)
Query: 314 SFEEFKGLSAVLREGVIQVSLAKKSQENKGDKVNLLYHYLTSSEFSMQVNVIIEG---FE 370
+ E L+ ++ VI+V+L ++E + + V LL H +T NV E E
Sbjct: 84 AIREELNLNPTVQGNVIRVTLPPLTEERRRELVRLL-HKITEEARVRVRNVRREAKEMIE 142
Query: 371 QLRADLESEK-RAMARIWKSREKQIDKV 397
+L E EK RA+ R+ K +K ID++
Sbjct: 143 ELEGISEDEKKRALERLQKLTDKYIDEI 170
>pdb|1JSM|B Chain B, Structure Of H5 Avian Haemagglutinin
pdb|1JSN|B Chain B, Structure Of Avian H5 Haemagglutinin Complexed With Lsta
Receptro Analog
pdb|1JSO|B Chain B, Structure Of Avian H5 Haemagglutinin Bound To Lstc
Receptor Analog
Length = 176
Score = 31.2 bits (69), Expect = 0.24
Identities = 30/126 (23%), Positives = 52/126 (40%), Gaps = 10/126 (7%)
Query: 115 ELLQKELDEKSKQVQELHQK-EAEIERLKRENNEAESRLKAENEKKLNEKLDLEREKIEK 173
E QK +D + +V + K + E + +E N E R++ N+K + LD+ E
Sbjct: 39 ESTQKAIDGTTNKVNSIIDKMNTQFEAVGKEFNNLERRIENLNKKMEDGFLDVWTYNAEL 98
Query: 174 ALHEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQQFQGEVQELAIEEFLRQKFPLDCI 233
L + E L+ + +KN K L + E+ E + K +C+
Sbjct: 99 -------LVLMENERTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFY--HKCDNECM 149
Query: 234 EEIKKG 239
E +K G
Sbjct: 150 ESVKNG 155
>pdb|1FU1|B Chain B, Crystal Structure Of Human Xrcc4
pdb|1FU1|A Chain A, Crystal Structure Of Human Xrcc4
Length = 203
Score = 31.2 bits (69), Expect = 0.24
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 115 ELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAENEKKLNEKLDLEREKIEKA 174
EL+ LD ++ + + E ERL R+ N+ + R EK +E +E
Sbjct: 125 ELIXYXLDTTAENQAKNEHLQKENERLLRDWNDVQGRF---------EKXVSAKEALETD 175
Query: 175 LHEKNELKFKQQEEQLEMLRNELKNA 200
L+++ L +++ ++ L N+L NA
Sbjct: 176 LYKRFILVLNEKKTKIRSLHNKLLNA 201
>pdb|1L4A|E Chain E, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 79
Score = 30.4 bits (67), Expect = 0.41
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 134 KEAEIERLKRENNEAES-------RLKAENEKKLNEKLDLEREKIEKALHEKNELKFKQQ 186
K A E+ EN E E+ R E K+ + K++ ERE++ + + +K LK K +
Sbjct: 2 KSASGEKEGNENAEEEAAAIEEARREAEERRKEKHRKMEEEREEMRQTIRDKYGLKKKVK 61
Query: 187 EE 188
EE
Sbjct: 62 EE 63
Score = 26.9 bits (58), Expect = 4.5
Identities = 16/49 (32%), Positives = 26/49 (52%), Gaps = 3/49 (6%)
Query: 154 AENEKKLNEKLDLEREKIEKALHEKNEL---KFKQQEEQLEMLRNELKN 199
A EK+ NE + E IE+A E E K ++ EE+ E +R +++
Sbjct: 4 ASGEKEGNENAEEEAAAIEEARREAEERRKEKHRKMEEEREEMRQTIRD 52
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of
Moesin
Length = 346
Score = 30.4 bits (67), Expect = 0.41
Identities = 19/54 (35%), Positives = 26/54 (47%), Gaps = 13/54 (24%)
Query: 124 KSKQVQELHQKEAEIERLKRENNEAESRLKAENEKKLNEKLDLEREKIEKALHE 177
K++ +E HQK+ E R ENEKK E + E+EKIE+ E
Sbjct: 306 KAQAREEKHQKQME-------------RAMLENEKKKREMAEKEKEKIEREKEE 346
>pdb|1AV1|A Chain A, Crystal Structure Of Human Apolipoprotein A-I
pdb|1AV1|B Chain B, Crystal Structure Of Human Apolipoprotein A-I
pdb|1AV1|C Chain C, Crystal Structure Of Human Apolipoprotein A-I
pdb|1AV1|D Chain D, Crystal Structure Of Human Apolipoprotein A-I
Length = 201
Score = 30.4 bits (67), Expect = 0.41
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Query: 135 EAEIERLKRENNEAESRLKA-------ENEKKLNEKLDLEREKIE---KALHEKNELKFK 184
E E E L++E ++ +KA + +KK E+++L R+K+E L E K
Sbjct: 34 EKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLH 93
Query: 185 QQEEQLEMLRNELKNAQR 202
+ +E+L L E+++ R
Sbjct: 94 ELQEKLSPLGEEMRDRAR 111
>pdb|1FXK|B Chain B, Crystal Structure Of Archaeal Prefoldin (Gimc)
Length = 109
Score = 29.6 bits (65), Expect = 0.69
Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 22/128 (17%)
Query: 73 KEQQAKFDEAVKQASALALQDERAKIIEEARKNAFLEQQKGLELLQKELDEKSKQVQELH 132
+ Q A+F + +QA A+++Q + ++ +++E K ++EL
Sbjct: 3 QHQLAQFQQLQQQAQAISVQKQT---------------------VEXQINETQKALEELS 41
Query: 133 QKEAEIERLKRENNEAESRLKAENEKKLNEKLDLEREKIEKALHEKNELKFKQQEEQLEM 192
+ + E K N K E ++L EKL+ + + EK + + E K+ +E
Sbjct: 42 RAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLR-EKTIERQEERVXKKLQEXQVN 100
Query: 193 LRNELKNA 200
++ K A
Sbjct: 101 IQEAXKGA 108
>pdb|1L7N|A Chain A, Transition State Analogue Of Phosphoserine Phosphatase
(Aluminum Fluoride Complex)
pdb|1L7N|B Chain B, Transition State Analogue Of Phosphoserine Phosphatase
(Aluminum Fluoride Complex)
pdb|1L7M|B Chain B, High Resolution Liganded Structure Of Phosphoserine
Phosphatase (Pi Complex)
pdb|1L7M|A Chain A, High Resolution Liganded Structure Of Phosphoserine
Phosphatase (Pi Complex)
Length = 211
Score = 28.9 bits (63), Expect = 1.2
Identities = 17/61 (27%), Positives = 33/61 (53%), Gaps = 2/61 (3%)
Query: 135 EAEIERLKRENNEAESRLKAENEKKLNEKLDLEREKIEKALHEKNELKFKQQEEQLEMLR 194
E E++++ +E E + + K+++ DL EK+EKA+ K + EE ++ L+
Sbjct: 32 EEEVKKITKEAXEGKLNFEQSLRKRVSLLKDLPIEKVEKAI--KRITPTEGAEETIKELK 89
Query: 195 N 195
N
Sbjct: 90 N 90
>pdb|1L7O|A Chain A, Crystal Structure Of Phosphoserine Phosphatase In Apo Form
pdb|1L7O|B Chain B, Crystal Structure Of Phosphoserine Phosphatase In Apo Form
pdb|1L7P|A Chain A, Substrate Bound Phosphoserine Phosphatase Complex
Structure
pdb|1L7P|B Chain B, Substrate Bound Phosphoserine Phosphatase Complex
Structure
Length = 211
Score = 28.9 bits (63), Expect = 1.2
Identities = 17/61 (27%), Positives = 33/61 (53%), Gaps = 2/61 (3%)
Query: 135 EAEIERLKRENNEAESRLKAENEKKLNEKLDLEREKIEKALHEKNELKFKQQEEQLEMLR 194
E E++++ +E E + + K+++ DL EK+EKA+ K + EE ++ L+
Sbjct: 32 EEEVKKITKEAXEGKLNFEQSLRKRVSLLKDLPIEKVEKAI--KRITPTEGAEETIKELK 89
Query: 195 N 195
N
Sbjct: 90 N 90
>pdb|1L6N|A Chain A, Structure Of The N-Terminal 283-Residue Fragment Of The
Hiv- 1 Gag Polyprotein
Length = 289
Score = 28.9 bits (63), Expect = 1.2
Identities = 31/127 (24%), Positives = 56/127 (43%), Gaps = 11/127 (8%)
Query: 19 DVNEALYKQIEQENQNKFLAQQKEFEKEVNEKRAQYLSYFKNLEQK-------EETLKER 71
D EAL K E++N++K AQQ + N + +Q +NL+ + TL
Sbjct: 96 DTKEALDKIEEEQNKSKKKAQQAAADTGNNSQVSQNYPIVQNLQGQMVHQAISPRTLNAW 155
Query: 72 EK--EQQAKFDEAVKQASALALQDERAKIIEEARKNAFLEQQKGLELLQKELDEKSKQVQ 129
K E++A E + SAL+ + N Q +++L++ ++E++ +
Sbjct: 156 VKVVEEKAFSPEVIPMFSALSEGATPQDL--NTMLNTVGGHQAAMQMLKETINEEAAEWD 213
Query: 130 ELHQKEA 136
LH A
Sbjct: 214 RLHPVHA 220
>pdb|1FXK|A Chain A, Crystal Structure Of Archaeal Prefoldin (Gimc)
Length = 107
Score = 28.5 bits (62), Expect = 1.5
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 22/116 (18%)
Query: 73 KEQQAKFDEAVKQASALALQDERAKIIEEARKNAFLEQQKGLELLQKELDEKSKQVQELH 132
+ Q A+F + +QA A+++Q + ++ +++E K ++EL
Sbjct: 4 QHQLAQFQQLQQQAQAISVQKQT---------------------VEXQINETQKALEELS 42
Query: 133 QKEAEIERLKRENNEAESRLKAENEKKLNEKLDLEREKIEKALHEKNELKFKQQEE 188
+ + E K N K E ++L EKL+ + + EK + + E K+ +E
Sbjct: 43 RAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLR-EKTIERQEERVXKKLQE 97
>pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
pdb|1F5S|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
Length = 211
Score = 28.5 bits (62), Expect = 1.5
Identities = 17/61 (27%), Positives = 33/61 (53%), Gaps = 2/61 (3%)
Query: 135 EAEIERLKRENNEAESRLKAENEKKLNEKLDLEREKIEKALHEKNELKFKQQEEQLEMLR 194
E E++++ +E E + + K+++ DL EK+EKA+ K + EE ++ L+
Sbjct: 32 EEEVKKITKEAMEGKLNFEQSLRKRVSLLKDLPIEKVEKAI--KRITPTEGAEETIKELK 89
Query: 195 N 195
N
Sbjct: 90 N 90
>pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
pdb|1J97|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
Length = 211
Score = 28.5 bits (62), Expect = 1.5
Identities = 17/61 (27%), Positives = 33/61 (53%), Gaps = 2/61 (3%)
Query: 135 EAEIERLKRENNEAESRLKAENEKKLNEKLDLEREKIEKALHEKNELKFKQQEEQLEMLR 194
E E++++ +E E + + K+++ DL EK+EKA+ K + EE ++ L+
Sbjct: 32 EEEVKKITKEAMEGKLNFEQSLRKRVSLLKDLPIEKVEKAI--KRITPTEGAEETIKELK 89
Query: 195 N 195
N
Sbjct: 90 N 90
>pdb|1MC8|A Chain A, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
pdb|1MC8|B Chain B, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
Length = 343
Score = 28.1 bits (61), Expect = 2.0
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 21/110 (19%)
Query: 78 KFDEAVKQASALALQDERAKI--------------IEEARKNAFLEQQKGLELLQKELDE 123
+F ++Q L D + +I +E K A++ K E +KEL++
Sbjct: 34 QFLSTIRQEDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPAYVFDGKPPEFKRKELEK 93
Query: 124 K--SKQVQELHQKEAEIERLKRENNEAESRLKAENEKKLNEKLDLEREKI 171
+ +++ EL KEA + N E+R A+ K+NE L + +K+
Sbjct: 94 RREAREEAELKWKEA-----LAKGNLEEARKYAQRATKVNEMLIEDAKKL 138
>pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex Containing An 8-Oxog
Lesion
Length = 564
Score = 28.1 bits (61), Expect = 2.0
Identities = 15/72 (20%), Positives = 38/72 (51%)
Query: 111 QKGLELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAENEKKLNEKLDLEREK 170
+K + LQ ++D K +Q+ + + + + +A+++ E++KK ++L+ + K
Sbjct: 440 EKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMK 499
Query: 171 IEKALHEKNELK 182
+E ++ E K
Sbjct: 500 LEVQATDREENK 511
>pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomerase I Dna Complex
Length = 563
Score = 28.1 bits (61), Expect = 2.0
Identities = 15/72 (20%), Positives = 38/72 (51%)
Query: 111 QKGLELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAENEKKLNEKLDLEREK 170
+K + LQ ++D K +Q+ + + + + +A+++ E++KK ++L+ + K
Sbjct: 439 EKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMK 498
Query: 171 IEKALHEKNELK 182
+E ++ E K
Sbjct: 499 LEVQATDREENK 510
>pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex
Length = 592
Score = 28.1 bits (61), Expect = 2.0
Identities = 15/72 (20%), Positives = 38/72 (51%)
Query: 111 QKGLELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAENEKKLNEKLDLEREK 170
+K + LQ ++D K +Q+ + + + + +A+++ E++KK ++L+ + K
Sbjct: 468 EKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMK 527
Query: 171 IEKALHEKNELK 182
+E ++ E K
Sbjct: 528 LEVQATDREENK 539
>pdb|1CXZ|B Chain B, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
Length = 86
Score = 27.7 bits (60), Expect = 2.6
Identities = 17/64 (26%), Positives = 32/64 (49%), Gaps = 13/64 (20%)
Query: 160 LNEKLDLEREKIEKALHEKNELKFKQQEEQLEMLRNE-----------LKNAQRKAELSS 208
+ ++L+LERE++ + + + ELK K+ E L + L+ + R+ +L
Sbjct: 19 VQQQLELERERLRREI--RKELKLKEGAENLRRATTDLGRSLGPVELLLRGSSRRLDLLH 76
Query: 209 QQFQ 212
QQ Q
Sbjct: 77 QQLQ 80
>pdb|1E4U|A Chain A, N-Terminal Ring Finger Domain Of Human Not-4
Length = 78
Score = 27.3 bits (59), Expect = 3.4
Identities = 9/22 (40%), Positives = 15/22 (67%)
Query: 10 ICPKCQEPIDVNEALYKQIEQE 31
+CP C++P + A+YK + QE
Sbjct: 52 LCPACRKPYPEDPAVYKPLSQE 73
>pdb|1IRM|A Chain A, Crystal Structure Of Apo Heme Oxygenase-1
pdb|1IRM|B Chain B, Crystal Structure Of Apo Heme Oxygenase-1
pdb|1IRM|C Chain C, Crystal Structure Of Apo Heme Oxygenase-1
pdb|1DVE|A Chain A, Crystal Structure Of Rat Heme Oxygenase-1 In Complex With
Heme
Length = 267
Score = 27.3 bits (59), Expect = 3.4
Identities = 16/73 (21%), Positives = 30/73 (40%)
Query: 21 NEALYKQIEQENQNKFLAQQKEFEKEVNEKRAQYLSYFKNLEQKEETLKEREKEQQAKFD 80
N +KQ+ + N + + E + +L + E+ + L E K+Q
Sbjct: 174 NPTKFKQLYRARMNTLEMTPEVKHRVTEEAKTAFLLNIELFEELQALLTEEHKDQSPSQT 233
Query: 81 EAVKQASALALQD 93
E ++Q A +QD
Sbjct: 234 EFLRQRPASLVQD 246
>pdb|1L9U|D Chain D, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|M Chain M, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9Z|D Chain D, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
Length = 1524
Score = 27.3 bits (59), Expect = 3.4
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 144 ENNEAESRLKAENEKKLNEKLD---LEREKIEKALHEKNELKFKQQEEQLEMLRNELKNA 200
E+ + ++R+ AE ++L ++LD LERE +E+ H + K + ++LE++R L +
Sbjct: 448 ESYDIDARMGAEAIQELLKELDLEKLERELLEEMKHPSRARRAKAR-KRLEVVRAFLDSG 506
Query: 201 QR 202
R
Sbjct: 507 NR 508
>pdb|1L9Z|H Chain H, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
Length = 438
Score = 27.3 bits (59), Expect = 3.4
Identities = 38/167 (22%), Positives = 73/167 (42%), Gaps = 21/167 (12%)
Query: 63 QKEETLKEREKEQQAKFDEAVKQASALALQDERAKIIEEARKN--AFLEQQKGLELLQKE 120
+K ++ K+ K Q+ + E VK+ L + E A+ +++ + L + LE L
Sbjct: 2 KKSKSKKKAAKAQEVEVKEPVKEPEPLP-ELEAAEDLQDLPEPDPELLASEPELEDLADP 60
Query: 121 LDEKSKQVQELHQKEAEIERLKRENNEAESRLKAENEKKLNEKLDLEREKIEKALHEKNE 180
LD + +L +E +E E E++L+ + + + LHE +
Sbjct: 61 LDLEGPLEADLLPEEGLLE---------------EEEEELSLPKVSTSDPVRQYLHEIGQ 105
Query: 181 LKFKQQEEQLEMLRNELKNAQRKAELSSQQFQGEVQELAIEEFLRQK 227
+ EE++++ R + + +LS + G QEL I E +R K
Sbjct: 106 VPLLTLEEEIDLARKVEEGMEAIKKLS--EATGLDQEL-IREVVRAK 149
>pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
Length = 776
Score = 26.9 bits (58), Expect = 4.5
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 119 KELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAENEKKLNEKLDLEREKIEKALHEK 178
K DE+ + QE H KE ++ + + + E +K E +KL EK+ + ++ KA+ K
Sbjct: 22 KRKDEERNKTQEEHLKEI-MKHIVKIEVKGEEAVKKEAAEKLLEKVPSDVLEMYKAIGGK 80
Score = 26.2 bits (56), Expect = 7.6
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 167 EREKIEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQQFQGEVQELAIEEFLRQ 226
E+EK + K+E + K QEE L+ + + + K E E + E L +
Sbjct: 13 EKEKNKDENKRKDEERNKTQEEHLKEIMKHIVKIEVKGE--------EAVKKEAAEKLLE 64
Query: 227 KFPLDCIEEIK 237
K P D +E K
Sbjct: 65 KVPSDVLEMYK 75
>pdb|1DVG|A Chain A, Crystal Structure Of Rat Heme Oxygenase-1 In Complex With
Heme; Seleleno-Methionine Derivative, Mutated At
M51t,M93l, M155l,M191l.
pdb|1DVG|B Chain B, Crystal Structure Of Rat Heme Oxygenase-1 In Complex With
Heme; Seleleno-Methionine Derivative, Mutated At
M51t,M93l, M155l,M191l
Length = 267
Score = 26.9 bits (58), Expect = 4.5
Identities = 16/73 (21%), Positives = 30/73 (40%)
Query: 21 NEALYKQIEQENQNKFLAQQKEFEKEVNEKRAQYLSYFKNLEQKEETLKEREKEQQAKFD 80
N +KQ+ + N + + E + +L + E+ + L E K+Q
Sbjct: 174 NPTKFKQLYRARXNTLELTPEVKHRVTEEAKTAFLLNIELFEELQALLTEEHKDQSPSQT 233
Query: 81 EAVKQASALALQD 93
E ++Q A +QD
Sbjct: 234 EFLRQRPASLVQD 246
>pdb|1EH1|A Chain A, Ribosome Recycling Factor From Thermus Thermophilus
Length = 185
Score = 26.9 bits (58), Expect = 4.5
Identities = 19/74 (25%), Positives = 36/74 (47%), Gaps = 1/74 (1%)
Query: 91 LQDERAKIIEEARKNAFLEQQKGLELLQKE-LDEKSKQVQELHQKEAEIERLKRENNEAE 149
L +ER K + A + E + + +++E LD+ K +ELH E E +R + E +
Sbjct: 106 LTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKIT 165
Query: 150 SRLKAENEKKLNEK 163
A+ ++ +K
Sbjct: 166 DEFIAKADQLAEKK 179
>pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
Length = 771
Score = 26.9 bits (58), Expect = 4.5
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
Query: 117 LQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAENEKKLNEKLDLEREKIEKALH 176
+QKEL+E +++ H++ ++ + R + L E+++ +EK+E A
Sbjct: 636 IQKELEEAKEKLARQHKR----------RSDDDDRSSDRKDGVLEEQIERLQEKVESAQS 685
Query: 177 EKNEL 181
E+ L
Sbjct: 686 EQKNL 690
>pdb|1A7V|A Chain A, Cytochrome C' From Rhodopseudomonas Palustris
pdb|1A7V|B Chain B, Cytochrome C' From Rhodopseudomonas Palustris
Length = 125
Score = 26.6 bits (57), Expect = 5.9
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 15/66 (22%)
Query: 33 QNKFLAQQKEFEKEVNEKRAQYLSYFKNLEQKEETLKEREKEQQAKFDEAVKQASALALQ 92
Q +AQ+K K++ E + K +AKFD+AV Q S A+
Sbjct: 1 QTDVIAQRKAILKQMGEATKPIAAMLKG---------------EAKFDQAVVQKSLAAIA 45
Query: 93 DERAKI 98
D+ K+
Sbjct: 46 DDSKKL 51
>pdb|1IU4|A Chain A, Crystal Structure Analysis Of The Microbial
Transglutaminase
pdb|1IU4|B Chain B, Crystal Structure Analysis Of The Microbial
Transglutaminase
pdb|1IU4|C Chain C, Crystal Structure Analysis Of The Microbial
Transglutaminase
pdb|1IU4|D Chain D, Crystal Structure Analysis Of The Microbial
Transglutaminase
Length = 331
Score = 26.6 bits (57), Expect = 5.9
Identities = 13/66 (19%), Positives = 33/66 (49%), Gaps = 1/66 (1%)
Query: 93 DERAKIIEEARKNAFLEQQKGLELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRL 152
+ RA+ K +F +++KG + ++ ++ ++ H + A ++ LK+E L
Sbjct: 103 ETRAEFEGRVAKESF-DEEKGFQRAREVASVMNRALENAHDESAYLDNLKKELANGNDAL 161
Query: 153 KAENEK 158
+ E+ +
Sbjct: 162 RNEDAR 167
Score = 26.2 bits (56), Expect = 7.6
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 171 IEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQQFQGEVQELAIEE 222
+ + N L F +E + +NELKN + ++ + +F+G V + + +E
Sbjct: 70 VNSGQYPTNRLAFASFDE--DRFKNELKNGRPRSGETRAEFEGRVAKESFDE 119
>pdb|1JF0|A Chain A, The Crystal Structure Of Obelin From Obelia Geniculata At
1.82 A Resolution
Length = 195
Score = 26.6 bits (57), Expect = 5.9
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 240 QRGGDCIQVVHTREFQNCGKIYYESKRTKEFQKAWVEKLKSDMREIGADVGVIVSE 295
QR DC++ F+ CG Y + + EF + W +D+ + + ++ E
Sbjct: 62 QRHQDCVEAF----FRGCGLEYGKETKFPEFLEGWKNLANADLAKWARNEPTLIRE 113
>pdb|1TF6|D Chain D, Co-Crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|A Chain A, Co-Crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 26.6 bits (57), Expect = 5.9
Identities = 13/44 (29%), Positives = 22/44 (49%), Gaps = 3/44 (6%)
Query: 245 CIQVVHTREFQNCGKIYYESKRTKEFQKAWVEKLKSDMREIGAD 288
C+ V H F+NCGK + + + K Q + ++L + G D
Sbjct: 103 CVYVCH---FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCD 143
>pdb|1EUO|A Chain A, Crystal Structure Of Nitrophorin 2 (Prolixin-S)
Length = 180
Score = 26.2 bits (56), Expect = 7.6
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 20 VNEALYKQIEQENQNKFLAQQKEFEKEVNEKRAQYLSYFKNLEQKEETLKEREKE 74
V EALY N NK + E ++ QY + +K +++K+ LKE +++
Sbjct: 52 VKEALYHY----NANKKTSFYNIGEGKLESSGLQYTAKYKTVDKKKAVLKEADEK 102
>pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer
Length = 419
Score = 26.2 bits (56), Expect = 7.6
Identities = 28/91 (30%), Positives = 45/91 (48%), Gaps = 12/91 (13%)
Query: 81 EAVKQASALALQDERAKIIEEARKNAFLEQQKGLELLQKELDEKSKQVQELHQKEAEIER 140
E +A+A AL D I++++ N K LE L++E KS ++E K+AE +
Sbjct: 24 ETPSKAAADALSDLE---IKDSKSNL----NKELETLREENRVKSDMLKEKLSKDAENHK 76
Query: 141 LKRENNEAESRLKAENEKK---LNEKLDLER 168
++++ E EK+ LNE D ER
Sbjct: 77 AYLKSHQVHRHKLKEMEKEEPLLNE--DKER 105
>pdb|1QSD|A Chain A, Rbl2p, Beta-Tubulin Binding Post-Chaperonin Cofactor
pdb|1QSD|B Chain B, Rbl2p, Beta-Tubulin Binding Post-Chaperonin Cofactor
Length = 106
Score = 26.2 bits (56), Expect = 7.6
Identities = 24/91 (26%), Positives = 43/91 (46%), Gaps = 3/91 (3%)
Query: 114 LELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAENEKKLNEK--LDLEREKI 171
++ L++ E+ QEL +EA + +LK + + LK + E + K L EKI
Sbjct: 10 VKALKRLTKEEGYYQQELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTLYEKI 69
Query: 172 EKALHEKNE-LKFKQQEEQLEMLRNELKNAQ 201
+ + + LK Q E + R+ + +AQ
Sbjct: 70 REFKEDLEQFLKTYQGTEDVSDARSAITSAQ 100
>pdb|1KVN|A Chain A, Solution Structure Of Protein Srp19 Of The Arhaeoglobus
Fulgidus Signal Recognition Particle, 10 Structures
pdb|1KVV|A Chain A, Solution Structure Of Protein Srp19 Of The Archaeoglobus
Fulgidus Signal Recognition Particle, Minimized Average
Structure
Length = 104
Score = 26.2 bits (56), Expect = 7.6
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 60 NLEQKEETLKEREKEQQ-----AKFDEAVKQASALALQDERAKIIEEARKNAFLEQQKGL 114
NL+ K+ + R ++ K E V+ + L L K E +K ++G
Sbjct: 10 NLDSKKSRAEGRRIPRRFAVPNVKLHELVEASKELGL-----KFRAEEKKYPKSWWEEGG 64
Query: 115 ELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLK 153
++ ++ K+K + EL +K AEI KRE + + + K
Sbjct: 65 RVVVEKRGTKTKLMIELARKIAEIREQKREQKKDKKKKK 103
>pdb|1FZP|B Chain B, Crystal Structures Of Sara: A Pleiotropic Regulator Of
Virulence Genes In S. Aureus
pdb|1FZP|D Chain D, Crystal Structures Of Sara: A Pleiotropic Regulator Of
Virulence Genes In S. Aureus
Length = 123
Score = 26.2 bits (56), Expect = 7.6
Identities = 13/47 (27%), Positives = 25/47 (52%)
Query: 20 VNEALYKQIEQENQNKFLAQQKEFEKEVNEKRAQYLSYFKNLEQKEE 66
+N YKQ + K L+Q+ F+K+ NE + + N +Q+++
Sbjct: 56 INHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKK 102
>pdb|1GO4|E Chain E, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20.
pdb|1GO4|F Chain F, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20.
pdb|1GO4|G Chain G, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20.
pdb|1GO4|H Chain H, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20
Length = 100
Score = 25.8 bits (55), Expect = 10.0
Identities = 24/86 (27%), Positives = 39/86 (44%), Gaps = 9/86 (10%)
Query: 133 QKEAEIERLKRENNEAESRLKAENEKKLNEKLDLEREKIEKALHEKNELKFKQQEEQLEM 192
++EA+ RLK E E E R + E EK++ E LER ++ + + + L M
Sbjct: 11 REEADTLRLKVEELEGE-RSRLEEEKRMLE-AQLERRALQGDYDQ-------SRTKVLHM 61
Query: 193 LRNELKNAQRKAELSSQQFQGEVQEL 218
N A+++ Q Q E + L
Sbjct: 62 SLNPTSVARQRLREDHSQLQAECERL 87
>pdb|1CZT|A Chain A, Crystal Structure Of The C2 Domain Of Human Coagulation
Factor V
pdb|1CZS|A Chain A, Crystal Structure Of The C2 Domain Of Human Coagulation
Factor V: Complex With Phenylmercury
pdb|1CZV|A Chain A, Crystal Structure Of The C2 Domain Of Human Coagulation
Factor V: Dimeric Crystal Form
pdb|1CZV|B Chain B, Crystal Structure Of The C2 Domain Of Human Coagulation
Factor V: Dimeric Crystal Form
Length = 160
Score = 25.8 bits (55), Expect = 10.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 378 SEKRAMARIWKSREKQIDKVFEGTINMYGSIK 409
SE+ + ++ + +DK+FEG N G +K
Sbjct: 94 SEQGVEWKPYRLKSSMVDKIFEGNTNTKGHVK 125
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.311 0.130 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,231,490
Number of Sequences: 13198
Number of extensions: 88555
Number of successful extensions: 377
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 68
length of query: 433
length of database: 2,899,336
effective HSP length: 91
effective length of query: 342
effective length of database: 1,698,318
effective search space: 580824756
effective search space used: 580824756
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)